Jatropha Genome Database

JcCB0020561.10  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0020561
Scaffold:
No data.
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl A9PL97_POPTR 218 72.8 81.5 (tr|A9PL97) AP2/ERF domain-containing transcription factor OS=Populus trichocarpa GN=RAP2L7 PE=4 SV=1
Arabidopsis_pep AT3G50260.1 168 60.8 73.4 | Symbols: CEJ1, ATERF#011 | CEJ1 (COOPERATIVELY REGULATED BY ETHYLENE AND JASMONATE 1); DNA binding / transcription factor | chr3:18634687-18635148 FORWARD
soybean_pep Glyma06g04490.1 193 65.4 76.3  
Medicago_pep IMGA|Medtr3g147420.1 189 59.4 71.2 Pathogenesis-related transcriptional factor and ERF chr03_pseudomolecule_IMGAG_V3 38146714-38147535 F EGN_Mt090430 20090702
grape_pep GSVIVT01022076001 177 61.0 71.1  
castor_bean_cds 30170.m013843 222 84.8 84.8 Dehydration-responsive element-binding protein 1B, putative
castor_bean_pep 30170.m013843 216 82.4 90.1 Dehydration-responsive element-binding protein 1B, putative
JAT_13201ests gi|268526119|gb|FM891375.1|FM891375 291 100.0 100.0 FM891375 Jatropha curcas embryo 56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_001648, mRNA sequence
KJC_r1 KJC_c02035 831 100.0 100.0  
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0020561.10 length: 158 aa.
IPR001471 Pathogenesis-related transcriptional factor/ERF, DNA-binding
method AccNumber shortName E-value location
Molecular Function GO:0003700 transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
FPrintScan PR00367 ETHRSPELEMNT 7e-12 33-44
71-91
Gene3D G3DSA:3.30.730.10 no description 2.8e-22 31-92
HMMPfam PF00847 AP2 4.7e-15 32-81
HMMSmart SM00380 no description 9.5e-35 32-95
ProfileScan PS51032 AP2_ERF 22.194 32-89
IPR016177 DNA-binding, integrase-type
Molecular Function GO:0003677 DNA binding    
superfamily SSF54171 DNA-binding 2.5e-22 31-92
no_ID  
Seg seg seg NA 8-19