Jatropha Genome Database

JcCB0011311.20 (JcS_100291.70)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0011311
Scaffold:
JcS_100291 JcCB0308331(+) =JcCA0310551(+) =JcCB0111501(+) =JcCB0379211(-) =JcCD0126540(+) =JcCB0011311(+) =JcCB0234411(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl B9RBE4_RICCO 626 96.8 99.7 (tr|B9RBE4) Guanine nucleotide-binding protein beta, putative OS=Ricinus communis GN=RCOM_1674940 PE=4 SV=1
Arabidopsis_pep AT4G34460.4 537 83.9 91.3 | Symbols: AGB1, ELK4, ATAGB1 | AGB1 (GTP BINDING PROTEIN BETA 1); GTPase/ nucleotide binding / protein binding | chr4:16477393-16479266 REVERSE
soybean_pep Glyma04g01460.1 604 93.5 98.4  
Medicago_pep IMGA|Medtr3g159480.1 603 93.9 97.7 WD40-like chr03_pseudomolecule_IMGAG_V3 41738916-41743736 E EGN_Mt090430 20090702
grape_pep GSVIVT01031958001 610 93.5 98.4  
castor_bean_cds 30190.m010890 1100 90.0 90.0 guanine nucleotide-binding protein beta, putative
castor_bean_pep 30190.m010890 626 96.8 99.7 guanine nucleotide-binding protein beta, putative
JAT_13201ests gi|268524247|gb|FM894926.1|FM894926 1084 99.8 99.8 FM894926 Jatropha curcas embryo 71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_000835, mRNA sequence
KJC_r1 KJC_c01751 1816 99.8 99.8  
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0011311.20 length: 310 aa.
IPR001632 G-protein, beta subunit
method AccNumber shortName E-value location
FPrintScan PR00319 GPROTEINB 1.6e-20 13-27
32-47
50-67
IPR001680 WD40 repeat
HMMSmart SM00320 no description 0.015 1-26
29-68
78-118
125-166
170-209
212-256
262-302
IPR011046 WD40 repeat-like-containing domain
superfamily SSF50978 WD40 3.7e-64 1-301
IPR015943 WD40/YVTN repeat-like-containing domain
Gene3D G3DSA:2.130.10.10 no description 3.8e-67 1-301
IPR016346 Guanine nucleotide-binding protein, beta subunit
HMMPIR PIRSF002394 Guanine 1.2e-146 1-302
IPR017986 WD40-repeat-containing domain
ProfileScan PS50294 WD_REPEATS_REGION 46.482 1-310
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 13-27
105-119
243-257
IPR019781 WD40 repeat, subgroup
HMMPfam PF00400 WD40 0.00013 1-26
40-68
84-118
134-166
173-209
231-256
272-301
IPR019782 WD40 repeat 2
ProfileScan PS50082 WD_REPEATS_2 11.478 1-35
85-127
133-175
177-218
270-301
IPR020472 G-protein beta WD-40 repeat, region
FPrintScan PR00320 GPROTEINBRPT 3e-07 13-27
105-119
153-167
no_ID  
HMMPanther PTHR19850 GUANINE 2.8e-296 1-302
HMMPanther PTHR19850:SF3 GUANINE 2.8e-296 1-302