Jatropha Genome Database

JcCB0008071.10  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0008071
Scaffold:
No data.
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl B9SSC6_RICCO 605 80.6 86.1 (tr|B9SSC6) Transcription factor, putative OS=Ricinus communis GN=RCOM_0187630 PE=4 SV=1
Arabidopsis_pep AT5G65670.2 426 59.3 71.1 | Symbols: IAA9 | IAA9 (INDOLE-3-ACETIC ACID INDUCIBLE 9); transcription factor | chr5:26254463-26256134 FORWARD
soybean_pep Glyma01g02350.3 487 66.1 73.9  
Medicago_pep IMGA|Medtr8g078700.1 471 64.4 72.8 AUX/IAA protein chr08_pseudomolecule_IMGAG_V3 16132304-16127004 E EGN_Mt090430 20090702
grape_pep GSVIVT01009238001 410 66.9 75.2  
castor_bean_cds 28179.m000461 882 84.5 84.5 transcription factor, putative
castor_bean_pep 28179.m000461 605 80.6 86.1 transcription factor, putative
JAT_13201ests gi|262090943|gb|GT229301.1|GT229301 430 100.0 100.0 JC866 Jatropha seeds from fruits at three stages of maturation Jatropha curcas cDNA clone PL21SE.F09.scf 5', mRNA sequence
KJC_r1 KJC_c04815 1493 99.1 99.1  
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0008071.10 length: 380 aa.
IPR011525 Aux/IAA-ARF-dimerisation
method AccNumber shortName E-value location
Molecular Function GO:0046983 protein dimerization activity    
ProfileScan PS50962 IAA_ARF 31.210 261-363
no_ID  
HMMPfam PF02309 AUX_IAA 2.1e-88 65-372
Seg seg seg NA 43-58
superfamily SSF54277 CAD 1e-10 256-361