Jatropha Genome Database

JcCB0004021.10 (JcS_202031.30)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0004021
Scaffold:
JcS_202031 JcCB0404331(-) =JcCB0004021(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9HFF7_POPTR 451 63.3 72.4 (tr|B9HFF7) Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_1082531 PE=4 SV=1
Arabidopsis_pep AT1G34370.1 251 42.1 59.7 | Symbols: STOP1 | STOP1 (sensitive to proton rhizotoxicity 1); nucleic acid binding / transcription factor/ zinc ion binding | chr1:12551002-12552501 FORWARD
soybean_pep Glyma18g02010.1 342 52.7 65.7  
Medicago_pep IMGA|Medtr3g101820.1 308 50.1 62.9 Zinc finger, C2H2-type chr03_pseudomolecule_IMGAG_V3 24704745-24705930 E EGN_Mt090430 20090702
grape_pep GSVIVT01004847001 374 56.7 69.0  
castor_bean_cds 28161.m000228 220 81.1 81.1 TRANSPARENT TESTA 1 protein, putative
castor_bean_pep 28161.m000228 425 61.6 73.5 TRANSPARENT TESTA 1 protein, putative
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c08048 1697 99.5 99.5  
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0004021.10 length: 389 aa.
IPR007087 Zinc finger, C2H2-type
method AccNumber shortName E-value location
Cellular Component GO:0005622 intracellular    
Molecular Function GO:0008270 zinc ion binding    
HMMPfam PF00096 zf-C2H2 3.4e-05 166-187
PatternScan PS00028 ZINC_FINGER_C2H2_1 NA 167-187
ProfileScan PS50157 ZINC_FINGER_C2H2_2 11.967 165-192
IPR015880 Zinc finger, C2H2-like
Cellular Component GO:0005622 intracellular    
Molecular Function GO:0008270 zinc ion binding    
HMMSmart SM00355 no description 17 165-187
215-248
253-275
no_ID  
HMMPanther PTHR11389 ZINC 2.9e-08 162-299
Seg seg seg NA 94-108
125-132
superfamily SSF57667 C2H2 0.00069 164-189
249-309