Jatropha Genome Database

JcCA0317991.20 (JcS_200936.30)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0317991
Scaffold:
JcS_200936 JcCB0781371(+) =JcCB0376921(-) =JcCA0317991(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl Q0PCG3_POPNI 600 93.1 95.0 (tr|Q0PCG3) RAD51 homolog OS=Populus nigra GN=PnRad51 PE=2 SV=1
Arabidopsis_pep AT5G20850.1 582 88.7 93.1 | Symbols: ATRAD51, RAD51 | ATRAD51; ATP binding / DNA binding / DNA-dependent ATPase/ damaged DNA binding / nucleoside-triphosphatase/ nucleotide binding / protein binding / sequence-specific DNA binding | chr5:7070758-7072860 REVERSE
soybean_pep Glyma13g17530.1 580 88.7 93.4  
Medicago_pep IMGA|Medtr8g133290.1 579 89.3 93.1 AAA ATPase; Rad51, N-terminal chr08_pseudomolecule_IMGAG_V3 31718429-31715564 E EGN_Mt090430 20090702
grape_pep GSVIVT01015002001 600 93.1 95.0  
castor_bean_cds 29739.m003680 805 92.1 92.1 DNA repair protein rad51, putative
castor_bean_pep 29739.m003680 533 88.2 88.9 DNA repair protein rad51, putative
JAT_13201ests gi|268520369|gb|FM890217.1|FM890217 234 99.2 99.2 FM890217 Jatropha curcas embryo 35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_004032, mRNA sequence
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0317991.20 length: 329 aa.
IPR003593 ATPase, AAA+ type, core
method AccNumber shortName E-value location
Molecular Function GO:0000166 nucleotide binding    
Molecular Function GO:0017111 nucleoside-triphosphatase activity    
HMMSmart SM00382 no description 0.00022 123-296
IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical
Molecular Function GO:0000166 nucleotide binding    
Molecular Function GO:0005515 protein binding    
superfamily SSF47794 Rad51 6e-20 20-89
IPR011941 DNA recombination/repair protein Rad51
Molecular Function GO:0003684 damaged DNA binding    
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006281 DNA repair    
Molecular Function GO:0008094 DNA-dependent ATPase activity    
HMMTigr TIGR02239 recomb_RAD51: 2.4e-187 29-329
IPR013632 DNA recombination and repair protein Rad51, C-terminal
HMMPfam PF08423 Rad51 2e-123 82-328
IPR016467 DNA recombination and repair protein, RecA-like
HMMPIR PIRSF005856 DNA 1e-168 1-329
IPR020587 DNA recombination/repair protein RecA, monomer-monomer interface
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006259 DNA metabolic process    
Molecular Function GO:0008094 DNA-dependent ATPase activity    
ProfileScan PS50163 RECA_3 15.621 266-329
IPR020588 DNA recombination/repair protein RecA/RadB, ATP-binding domain
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006259 DNA metabolic process    
Molecular Function GO:0008094 DNA-dependent ATPase activity    
ProfileScan PS50162 RECA_2 28.871 102-263
no_ID  
Gene3D G3DSA:1.10.150.20 no description 1.4e-26 5-89
Gene3D G3DSA:3.40.50.300 no description 4.1e-73 94-326
HMMPanther PTHR22942 RECA/RAD51/RADA 4.4e-140 134-328
HMMPanther PTHR22942:SF12 DNA 4.4e-140 134-328
Seg seg seg NA 2-24
superfamily SSF52540 P-loop 6.6e-63 88-329