Jatropha Genome Database

JcCA0316351.10 (JcS_103858.20)

Related links:

GeneModel

Predicted Sequence Links:

Genome Sequence: JcCA0316351

Full length sequence(10036 bp)
Sequence Cut

Init: Term:
reverse complement

Scaffold:

JcS_103858

JcPR04JFGF8(+) =JcCA0316351(-) =JcCA0267571(+)

Results of Blast2 searches (The best-hits are tabulated.):

database	Accession	Score	Iden (%)	Posi (%)	Definition
trembl	B9RHA7_RICCO	521	89.8	94.0	(tr\|B9RHA7) DNA replication licensing factor MCM4, putative OS=Ricinus communis GN=RCOM_1449150 PE=3 SV=1
Arabidopsis_pep	AT2G16440.1	445	77.0	85.7	\| Symbols: MCM4 \| DNA replication licensing factor, putative \| chr2:7126536-7130665 REVERSE
soybean_pep	Glyma11g12110.1	492	84.5	91.5
Medicago_pep	IMGA\|Medtr4g096540.1	449	78.8	87.6	MCM; Nucleic acid-binding, OB-fold, subgroup chr04_pseudomolecule_IMGAG_V3 20349558-20344347 E EGN_Mt090430 20090702
grape_pep	GSVIVT01024207001	498	86.3	91.2
castor_bean_cds	30131.m007101	896	88.3	88.3	DNA replication licensing factor MCM4, putative
castor_bean_pep	30131.m007101	521	89.8	94.0	DNA replication licensing factor MCM4, putative
JAT_13201ests	--No_Hits--
KJC_r1	--No_Hits--

A list of protein families, domains and functional sites (searches in InterPro)

IPR001208	DNA-dependent ATPase MCM
JcCA0316351.10				length: 306 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0003677	DNA binding
Molecular Function	GO:0005524	ATP binding
Biological Process	GO:0006260	DNA replication
FPrintScan	PR01657	MCMFAMILY	2.2e-13	25-38 49-61 76-84
HMMPfam	PF00493	MCM	4.7e-68	23-209
HMMSmart	SM00350	no description	1.9e-16	1-210
ProfileScan	PS50051	MCM_2	33.772	23-102
IPR008047	MCM protein 4
Molecular Function	GO:0003677	DNA binding
Molecular Function	GO:0005524	ATP binding
Biological Process	GO:0006270	DNA replication initiation
FPrintScan	PR01660	MCMPROTEIN4	2.1e-06	58-75 210-219
no_ID
HMMPanther	PTHR11630	DNA	3.4e-128	26-302
HMMPanther	PTHR11630:SF45	DNA	3.4e-128	26-302
Seg	seg	seg	NA	262-269
superfamily	SSF52540	P-loop	5.2e-22	22-224