Jatropha Genome Database

JcCA0305711.10 (JcS_103341.10)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0305711
Scaffold:
JcS_103341 JcCA0268421(+) =JcCA0133411(-) =JcCA0305711(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9SND3_RICCO 246 57.9 62.9 (tr|B9SND3) Zinc finger protein, putative OS=Ricinus communis GN=RCOM_0175070 PE=4 SV=1
Arabidopsis_pep AT1G27730.1 137 38.1 47.5 | Symbols: STZ, ZAT10 | STZ (salt tolerance zinc finger); nucleic acid binding / transcription factor/ transcription repressor/ zinc ion binding | chr1:9648302-9648985 REVERSE
soybean_pep Glyma17g35430.1 161 44.7 53.7  
Medicago_pep IMGA|Medtr1g023440.1 139 42.0 49.6 Zinc finger, C2H2-type chr01_pseudomolecule_IMGAG_V3 5223325-5222425 E EGN_Mt090430 20090702
grape_pep GSVIVT01037851001 101 54.7 67.9  
castor_bean_cds 28152.m000908 155 89.6 89.6 zinc finger protein, putative
castor_bean_pep 28152.m000908 246 57.9 62.9 zinc finger protein, putative
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c06155 599 99.1 99.1  
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0305711.10 length: 243 aa.
IPR007087 Zinc finger, C2H2-type
method AccNumber shortName E-value location
Cellular Component GO:0005622 intracellular    
Molecular Function GO:0008270 zinc ion binding    
PatternScan PS00028 ZINC_FINGER_C2H2_1 NA 81-101
141-161
ProfileScan PS50157 ZINC_FINGER_C2H2_2 9.390 79-106
139-161
IPR015880 Zinc finger, C2H2-like
Cellular Component GO:0005622 intracellular    
Molecular Function GO:0008270 zinc ion binding    
HMMSmart SM00355 no description 0.035 79-101
139-161
no_ID  
HMMPanther PTHR23224 ZINC 1.9e-05 78-163
HMMPanther PTHR23224:SF459ZINC FINGER 1.9e-05 78-163
Seg seg seg NA 67-73
99-138
178-193
superfamily SSF57667 C2H2 0.00027 134-170
74-110