Jatropha Genome Database

JcCA0299151.10 (JcS_105451.10)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0299151
Scaffold:
JcS_105451 JcCB0072391(+) =JcCB0038951(+) =JcCA0299151(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl B9RKK2_RICCO 268 61.1 65.7 (tr|B9RKK2) Transcriptional factor TINY, putative OS=Ricinus communis GN=RCOM_1050490 PE=4 SV=1
Arabidopsis_pep AT5G11590.1 185 55.9 63.8 | Symbols: TINY2 | TINY2 (TINY2); DNA binding / transcription factor | chr5:3727789-3728499 REVERSE
soybean_pep Glyma08g03910.1 196 56.7 65.6  
Medicago_pep IMGA|Medtr4g159580.1 187 59.8 69.6 Pathogenesis-related transcriptional factor and ERF chr04_pseudomolecule_IMGAG_V3 40277260-40279832 E EGN_Mt090430 20090702
grape_pep GSVIVT01018226001 143 70.2 82.7  
castor_bean_cds 29912.m005463 280 84.0 84.0 Transcriptional factor TINY, putative
castor_bean_pep 29912.m005463 268 61.1 65.7 Transcriptional factor TINY, putative
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c13094 65.9 85.2 85.2  
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0299151.10 length: 248 aa.
IPR001471 Pathogenesis-related transcriptional factor/ERF, DNA-binding
method AccNumber shortName E-value location
Molecular Function GO:0003700 transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
FPrintScan PR00367 ETHRSPELEMNT 4e-10 62-73
84-100
Gene3D G3DSA:3.30.730.10 no description 6.3e-23 60-121
HMMPfam PF00847 AP2 3.2e-15 60-110
HMMSmart SM00380 no description 7.2e-36 61-124
ProfileScan PS51032 AP2_ERF 23.011 61-118
IPR016177 DNA-binding, integrase-type
Molecular Function GO:0003677 DNA binding    
superfamily SSF54171 DNA-binding 5.8e-23 60-121
no_ID  
Seg seg seg NA 19-30
162-182