Jatropha Genome Database

JcCA0296621.20 (JcS_102597.20)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0296621
Scaffold:
JcS_102597 JcCB0742921(-) =JcCA0296621(+) =JcCB0190531(-) =JcCA0315581(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9RJ77_RICCO 650 80.3 85.0 (tr|B9RJ77) LysM domain GPI-anchored protein 1, putative OS=Ricinus communis GN=RCOM_1032080 PE=4 SV=1
Arabidopsis_pep AT1G21880.2 538 76.8 87.8 | Symbols: LYM1 | LYM1 (LYSM DOMAIN GPI-ANCHORED PROTEIN 1 PRECURSOR) | chr1:7680689-7682526 FORWARD
soybean_pep Glyma04g42930.1 549 79.1 90.0  
Medicago_pep IMGA|Medtr3g097500.1 521 77.7 90.6 Peptidase S1 and S6, chymotrypsin/Hap; Peptidoglycan-binding LysM chr03_pseudomolecule_IMGAG_V3 23350585-23353777 E EGN_Mt090430 20090702
grape_pep GSVIVT01008882001 554 71.8 81.3  
castor_bean_cds 29908.m006175 1031 87.2 87.2 LysM domain GPI-anchored protein 1 precursor, putative
castor_bean_pep 29908.m006175 650 80.3 85.0 LysM domain GPI-anchored protein 1 precursor, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0296621.20 length: 414 aa.
IPR002482 Peptidoglycan-binding Lysin subgroup
method AccNumber shortName E-value location
Biological Process GO:0016998 cell wall macromolecule catabolic process    
HMMSmart SM00257 no description 5.9e-05 106-153
172-215
IPR018392 Peptidoglycan-binding lysin domain
Biological Process GO:0016998 cell wall macromolecule catabolic process    
HMMPfam PF01476 LysM 2.6e-07 107-153
173-215
no_ID  
Seg seg seg NA 339-382
superfamily SSF54106 LysM 3.9e-05 169-217
103-155