Jatropha Genome Database

JcCA0288061.10 (JcS_100073.20)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0288061
Scaffold:
JcS_100073 JcCB0251321(-) =JcCA0288061(-) =JcCB0432331(+) =JcCB0229931(+) =JcCA0012252(-) =JcCB0687271(+) =JcCB0339751(-) =JcCB0763531(+) =JcCB0332961(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9S4R8_RICCO 344 83.8 89.4 (tr|B9S4R8) Trytophan synthase alpha subunit, putative OS=Ricinus communis GN=RCOM_0991580 PE=3 SV=1
Arabidopsis_pep AT3G54640.1 275 67.8 82.4 | Symbols: TSA1, TRP3 | TSA1 (TRYPTOPHAN SYNTHASE ALPHA CHAIN); tryptophan synthase | chr3:20223331-20225303 REVERSE
soybean_pep Glyma19g34350.1 291 71.5 84.0  
Medicago_pep --No_Hits--        
grape_pep GSVIVT01000716001 270 84.7 94.0  
castor_bean_cds 29883.m001987 474 85.2 85.2 trytophan synthase alpha subunit, putative
castor_bean_pep 29883.m001987 344 83.8 89.4 trytophan synthase alpha subunit, putative
JAT_13201ests gi|268518068|gb|FM893443.1|FM893443 65.9 97.6 97.6 FM893443 Jatropha curcas embryo 56-70 (DAF) Jatropha curcas cDNA clone rjcaeb1_004231, mRNA sequence
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0288061.10 length: 221 aa.
IPR002028 Tryptophan synthase, alpha chain
method AccNumber shortName E-value location
Molecular Function GO:0004834 tryptophan synthase activity    
Biological Process GO:0006568 tryptophan metabolic process    
HMMPfam PF00290 Trp_syntA 2e-55 56-200
HMMTigr TIGR00262 trpA: 5.1e-10 56-221
IPR011060 Ribulose-phosphate binding barrel
Molecular Function GO:0003824 catalytic activity    
Biological Process GO:0008152 metabolic process    
superfamily SSF51366 Ribulose-phoshate 8.7e-51 49-200
IPR013785 Aldolase-type TIM barrel
Molecular Function GO:0003824 catalytic activity    
Biological Process GO:0008152 metabolic process    
Gene3D G3DSA:3.20.20.70 no description 4.2e-48 50-200
IPR018204 Tryptophan synthase, alpha chain, active site
PatternScan PS00167 TRP_SYNTHASE_ALPHA NA 96-109
no_ID  
HMMPanther PTHR10314 SER/THR 1.9e-34 102-200
HMMPanther PTHR10314:SF4 TRYTOPHAN 1.9e-34 102-200