Jatropha Genome Database

JcCA0259521.10  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0259521
Scaffold:
No data.
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9RRQ7_RICCO 349 91.0 93.1 (tr|B9RRQ7) Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_0797260 PE=4 SV=1
Arabidopsis_pep AT3G50700.1 320 90.3 98.7 | Symbols: AtIDD2 | AtIDD2 (Arabidopsis thaliana Indeterminate(ID)-Domain 2); nucleic acid binding / transcription factor/ zinc ion binding | chr3:18840945-18842829 FORWARD
soybean_pep Glyma10g05880.1 324 81.6 88.8  
Medicago_pep IMGA|Medtr8g018830.1 328 93.0 97.5 Zinc finger, C2H2-type chr08_pseudomolecule_IMGAG_V3 3503403-3500493 E EGN_Mt090430 20090702
grape_pep GSVIVT01035391001 337 96.9 97.5  
castor_bean_cds 29794.m003304 577 90.7 90.7 nucleic acid binding protein, putative
castor_bean_pep 29794.m003304 349 91.0 93.1 nucleic acid binding protein, putative
JAT_13201ests gi|268522602|gb|FM896643.1|FM896643 109 86.7 86.7 FM896643 Jatropha curcas embryo 71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_003913, mRNA sequence
KJC_r1 KJC_c02448 1015 99.6 99.6  
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0259521.10 length: 235 aa.
IPR007087 Zinc finger, C2H2-type
method AccNumber shortName E-value location
Cellular Component GO:0005622 intracellular    
Molecular Function GO:0008270 zinc ion binding    
PatternScan PS00028 ZINC_FINGER_C2H2_1 NA 77-97
ProfileScan PS50157 ZINC_FINGER_C2H2_2 10.845 75-97
IPR015880 Zinc finger, C2H2-like
Cellular Component GO:0005622 intracellular    
Molecular Function GO:0008270 zinc ion binding    
HMMSmart SM00355 no description 1.3e+02 75-97
116-146
151-171
no_ID  
HMMPanther PTHR10593 SERINE/THREONINE-PROTEIN 2.1e-12 114-192
HMMPanther PTHR10593:SF10 UNCHARACTERIZED 2.1e-12 114-192
HMMPfam PF12171 zf-C2H2_jaz 4.7e-05 74-97
Seg seg seg NA 9-26
31-55
superfamily SSF57667 C2H2 5.9e-05 74-99
133-173