Jatropha Genome Database

JcCA0216321.10 (JcS_200426.10)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0216321
Scaffold:
JcS_200426 JcCA0216321(-) =JcCB0008641(-) =JcCB0597261(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9SD43_RICCO 245 98.3 100.0 (tr|B9SD43) Ccaat-binding transcription factor subunit A, putative OS=Ricinus communis GN=RCOM_1069020 PE=4 SV=1
Arabidopsis_pep AT2G38880.3 205 83.8 88.9 | Symbols: NF-YB1 | NF-YB1 (NUCLEAR FACTOR Y, SUBUNIT B1); transcription factor | chr2:16238685-16240225 FORWARD
soybean_pep Glyma19g36220.1 218 88.0 93.2  
Medicago_pep IMGA|Medtr7g068360.1 216 86.3 93.2 Histone-like transcription factor CBF/NF-Y/archaeal histone, subunit A; Transcription factor CBF/NF-Y/archaeal histone chr07_pseudomolecule_IMGAG_V3 13992380-13994623 E EGN_Mt090430 20090702
grape_pep GSVIVT01016347001 227 92.2 94.0  
castor_bean_cds 29923.m000817 468 92.0 92.0 ccaat-binding transcription factor subunit A, putative
castor_bean_pep 29923.m000817 245 98.3 100.0 ccaat-binding transcription factor subunit A, putative
JAT_13201ests gi|262091210|gb|GT228637.1|GT228637 81.8 100.0 100.0 JC202 Jatropha seeds from fruits at three stages of maturation Jatropha curcas cDNA clone PL02SE.G02.scf 5', mRNA sequence
KJC_r1 KJC_c05967 690 100.0 100.0  
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0216321.10 length: 133 aa.
IPR003956 Transcription factor, NFYB/HAP3, conserved site
method AccNumber shortName E-value location
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0043565 sequence-specific DNA binding    
PatternScan PS00685 NFYB_HAP3 NA 62-78
IPR003957 Transcription factor, CBFA/NFYB, DNA topoisomerase
Molecular Function GO:0003677 DNA binding    
FPrintScan PR00615 CCAATSUBUNTA 1.5e-21 59-77
78-96
97-115
HMMPanther PTHR11064:SF9 CCAAT-BINDING 2e-66 25-116
IPR003958 Transcription factor CBF/NF-Y/archaeal histone
Cellular Component GO:0005622 intracellular    
Molecular Function GO:0043565 sequence-specific DNA binding    
HMMPfam PF00808 CBFD_NFYB_HMF 8.2e-29 31-95
IPR009072 Histone-fold
Molecular Function GO:0003677 DNA binding    
Gene3D G3DSA:1.10.20.10 no description 5.6e-40 17-117
superfamily SSF47113 Histone-fold 3.1e-36 28-117
no_ID  
HMMPanther PTHR11064 CCAAT-BINDING 2e-66 25-116