Jatropha Genome Database

JcCA0150751.10 (JcS_100129.30)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0150751
Scaffold:
JcS_100129 JcCA0301881(+) =JcCB0062531(-) =JcCA0150751(+) =JcCB0228191(-) =JcCA0221281(-) =JcCB0229861(-) =JcCB0103991(+) =JcCA0015901(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9S7I1_RICCO 204 54.6 57.5 (tr|B9S7I1) Synovial sarcoma associated ss18 protein, putative OS=Ricinus communis GN=RCOM_0608010 PE=4 SV=1
Arabidopsis_pep AT5G28640.1 138 87.7 97.3 | Symbols: AN3, GIF, GIF1 | AN3 (ANGUSTIFOLIA 3); protein binding / transcription coactivator | chr5:10647831-10649620 REVERSE
soybean_pep Glyma03g40930.1 151 77.9 81.7  
Medicago_pep IMGA|Medtr1g094100.1 157 49.3 53.6 SSXT chr01_pseudomolecule_IMGAG_V3 19387163-19389048 E EGN_Mt090430 20090702
grape_pep GSVIVT01036262001 173 81.6 85.4  
castor_bean_cds 29680.m001664 626 87.4 87.4 synovial sarcoma associated ss18 protein, putative
castor_bean_pep 29680.m001664 204 54.6 57.5 synovial sarcoma associated ss18 protein, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0150751.10 length: 219 aa.
IPR007726 SSXT
method AccNumber shortName E-value location
HMMPanther PTHR23107 SYNOVIAL 1e-33 2-128
HMMPfam PF05030 SSXT 1.3e-16 19-73
no_ID  
Seg seg seg NA 1-12
92-103
116-149
152-165
185-205