Jatropha Genome Database

JcCA0144521.10 (JcS_105813.20)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0144521
Scaffold:
JcS_105813 JcCD0102044(-) =JcPR03AKSGS(+) =JcCA0144521(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl B9T5L9_RICCO 634 89.7 93.0 (tr|B9T5L9) Multidrug resistance protein, putative OS=Ricinus communis GN=RCOM_0048860 PE=4 SV=1
Arabidopsis_pep AT5G39040.1 573 79.0 87.5 | Symbols: ATTAP2, TAP2 | ATTAP2; ATPase, coupled to transmembrane movement of substances / transporter | chr5:15625660-15629621 FORWARD
soybean_pep Glyma05g00240.1 582 79.1 86.9  
Medicago_pep IMGA|Medtr8g133840.1 281 44.1 64.1 AAA ATPase; ABC transporter, transmembrane region, type 1 chr08_pseudomolecule_IMGAG_V3 32043496-32037496 E EGN_Mt090430 20090702
grape_pep GSVIVT01032898001 588 80.4 88.2  
castor_bean_cds 27623.m000136 1277 90.1 90.1 Multidrug resistance protein, putative
castor_bean_pep 27623.m000136 634 89.7 93.0 Multidrug resistance protein, putative
JAT_13201ests gi|238476742|gb|GR209280.1|GR209280 527 94.9 94.9 JCST59 Jatropha curcas L. seed cDNA library Jatropha curcas cDNA 3' similar to Populus trichocarpa ABC transporter family protein, mRNA sequence
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0144521.10 length: 460 aa.
IPR001140 ABC transporter, transmembrane domain
method AccNumber shortName E-value location
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006810 transport    
Cellular Component GO:0016021 integral to membrane    
Molecular Function GO:0042626 ATPase activity, coupled to transmembrane movement of substances    
Biological Process GO:0055085 transmembrane transport    
HMMPfam PF00664 ABC_membrane 1.8e-07 102-165
IPR003439 ABC transporter-like
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0016887 ATPase activity    
HMMPfam PF00005 ABC_tran 1.4e-21 256-382
ProfileScan PS50893 ABC_TRANSPORTER_2 26.477 214-451
IPR003593 ATPase, AAA+ type, core
Molecular Function GO:0000166 nucleotide binding    
Molecular Function GO:0017111 nucleoside-triphosphatase activity    
HMMSmart SM00382 no description 8.8e-18 241-435
IPR011527 ABC transporter, transmembrane domain, type 1
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006810 transport    
Cellular Component GO:0016021 integral to membrane    
Molecular Function GO:0042626 ATPase activity, coupled to transmembrane movement of substances    
Biological Process GO:0055085 transmembrane transport    
superfamily SSF90123 Multidrug 9.8e-17 101-206
IPR017871 ABC transporter, conserved site
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0016887 ATPase activity    
PatternScan PS00211 ABC_TRANSPORTER_1 NA 354-368
IPR017940 ABC transporter integral membrane type 1
ProfileScan PS50929 ABC_TM1F 15.392 101-180
no_ID  
Gene3D G3DSA:3.40.50.300 no description 1.4e-79 179-452
HMMPanther PTHR19242 ATP-BINDING 6.1e-197 102-455
HMMPanther PTHR19242:SF76 ATP-BINDING 6.1e-197 102-455
Seg seg seg NA 83-100
159-176
superfamily SSF52540 P-loop 1.2e-70 214-456