| JcS_100203 | JcCD0096881(+) =JcCA0015332(-) =JcCB0689591(+) =JcCB0013291(+) =JcCB0227251(-) =JcCB0400871(+) =JcCA0141551(+) =JcCA0236591(-) |
| database | Accession | Score | Iden (%) |
Posi (%) |
Definition |
|---|---|---|---|---|---|
| trembl | B9RZR1_RICCO | 1216 | 89.9 | 94.9 | (tr|B9RZR1) Phytochrome B, putative OS=Ricinus communis GN=RCOM_1000590 PE=4 SV=1 |
| Arabidopsis_pep | AT2G18790.1 | 1048 | 77.2 | 88.5 | | Symbols: PHYB, HY3, OOP1 | PHYB (PHYTOCHROME B); G-protein coupled photoreceptor/ protein histidine kinase/ red or far-red light photoreceptor/ signal transducer | chr2:8140079-8144151 FORWARD |
| soybean_pep | Glyma09g03990.1 | 1140 | 82.8 | 92.5 | |
| Medicago_pep | IMGA|Medtr2g038110.1 | 1101 | 80.9 | 91.9 | Bacteriophytochrome; ; ; chr02_pseudomolecule_IMGAG_V3 10630151-10619628 E EGN_Mt090430 20090702 |
| grape_pep | GSVIVT01034989001 | 1115 | 82.8 | 90.2 | |
| castor_bean_cds | 29889.m003301 | 2141 | 89.2 | 89.2 | phytochrome B, putative |
| castor_bean_pep | 29889.m003301 | 1216 | 89.9 | 94.9 | phytochrome B, putative |
| JAT_13201ests | --No_Hits-- | ||||
| KJC_r1 | KJC_c06818 | 805 | 99.8 | 99.8 |
| JcCA0141551.10 | length: 643 aa. | |||
| IPR000014 | PAS | |||
|---|---|---|---|---|
| method | AccNumber | shortName | E-value | location |
| Molecular Function | GO:0004871 | signal transducer activity | ||
| Biological Process | GO:0007165 | signal transduction | ||
| HMMSmart | SM00091 | no description | 0.0053 | 136-203 267-337 |
| HMMTigr | TIGR00229 | sensory_box: | 4.2e-12 | 132-262 |
| ProfileScan | PS50112 | PAS | 13.741 | 134-205 265-320 |
| IPR001294 | Phytochrome | |||
| Biological Process | GO:0006355 | regulation of transcription, DNA-dependent | ||
| Molecular Function | GO:0008020 | G-protein coupled photoreceptor activity | ||
| FPrintScan | PR01033 | PHYTOCHROME | 1.3e-59 | 34-53 67-85 137-153 156-171 230-247 250-270 |
| IPR003594 | ATPase-like, ATP-binding domain | |||
| Molecular Function | GO:0005524 | ATP binding | ||
| Gene3D | G3DSA:3.30.565.10 | no description | 2.1e-10 | 475-634 |
| HMMPfam | PF02518 | HATPase_c | 1.7e-12 | 521-631 |
| HMMSmart | SM00387 | no description | 6.6e-14 | 521-634 |
| superfamily | SSF55874 | ATPase | 6e-18 | 473-634 |
| IPR003661 | Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain | |||
| Molecular Function | GO:0000155 | two-component sensor activity | ||
| Biological Process | GO:0007165 | signal transduction | ||
| Cellular Component | GO:0016020 | membrane | ||
| HMMPfam | PF00512 | HisKA | 3.1e-10 | 413-473 |
| HMMSmart | SM00388 | no description | 3.5e-11 | 409-473 |
| IPR005467 | Signal transduction histidine kinase, core | |||
| Molecular Function | GO:0000155 | two-component sensor activity | ||
| Molecular Function | GO:0004673 | protein histidine kinase activity | ||
| Biological Process | GO:0007165 | signal transduction | ||
| Biological Process | GO:0018106 | peptidyl-histidine phosphorylation | ||
| ProfileScan | PS50109 | HIS_KIN | 37.536 | 416-636 |
| IPR013515 | Phytochrome, central region | |||
| Molecular Function | GO:0004872 | receptor activity | ||
| Biological Process | GO:0006355 | regulation of transcription, DNA-dependent | ||
| Biological Process | GO:0007600 | sensory perception | ||
| Molecular Function | GO:0008020 | G-protein coupled photoreceptor activity | ||
| Biological Process | GO:0018298 | protein-chromophore linkage | ||
| HMMPfam | PF00360 | Phytochrome | 2.5e-43 | 2-106 |
| IPR013767 | PAS fold | |||
| Biological Process | GO:0006355 | regulation of transcription, DNA-dependent | ||
| HMMPfam | PF00989 | PAS | 6.9e-25 | 137-252 268-387 |
| no_ID | ||||
| Gene3D | G3DSA:3.30.450.20 | no description | 9.9e-06 | 138-262 283-390 |
| HMMPanther | PTHR23283 | SENSOR | 3.1e-139 | 1-234 |
| HMMPanther | PTHR23283:SF3 | PHYTOCHROME | 3.1e-139 | 1-234 |
| superfamily | SSF55785 | PYP-like | 2.8e-16 | 140-252 251-383 |