Jatropha Genome Database

JcCA0139601.10 (JcS_106348.20)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0139601
Scaffold:
JcS_106348 JcCA0139601(-) =JcCA0230201(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl A9J226_WHEAT 127 98.3 100.0 (tr|A9J226) MIKC-type MADS-box transcription factor WM29B OS=Triticum aestivum GN=WM29B PE=2 SV=1
Arabidopsis_pep AT4G18960.1 124 100.0 100.0 | Symbols: AG | AG (AGAMOUS); DNA binding / transcription factor | chr4:10383917-10388272 FORWARD
soybean_pep Glyma13g29510.1 125 98.3 100.0  
Medicago_pep IMGA|Medtr3g013050.1 125 100.0 100.0 Transcription factor, MADS-box; Transcription factor, K-box chr03_pseudomolecule_IMGAG_V3 2348300-2341992 E EGN_Mt090430 20090702
grape_pep GSVIVT01000802001 125 98.3 100.0  
castor_bean_cds 30170.m013818 95.6 96.4 96.4 mads box protein, putative
castor_bean_pep 30174.m008934 107 83.1 93.2 mads box protein, putative
JAT_13201ests gi|262091321|gb|GT228748.1|GT228748 56.0 83.3 83.3 JC313 Jatropha seeds from fruits at three stages of maturation Jatropha curcas cDNA clone PL06SE.E07.scf 5', mRNA sequence
KJC_r1 KJC_c11682 54.0 94.3 94.3  
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0139601.10 length: 61 aa.
IPR002100 Transcription factor, MADS-box
method AccNumber shortName E-value location
Molecular Function GO:0003700 transcription factor activity    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0043565 sequence-specific DNA binding    
FPrintScan PR00404 MADSDOMAIN 4.7e-34 3-23
23-38
38-59
HMMPfam PF00319 SRF-TF 9.2e-31 9-59
HMMSmart SM00432 no description 1.3e-42 1-60
PatternScan PS00350 MADS_BOX_1 NA 3-57
ProfileScan PS50066 MADS_BOX_2 34.048 1-61
superfamily SSF55455 SRF-like 1.1e-27 1-61
no_ID  
HMMPanther PTHR11945 MADS 2.7e-44 10-60
HMMPanther PTHR11945:SF19 MADS 2.7e-44 10-60