Jatropha Genome Database

JcCA0122821.10  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0122821
Scaffold:
No data.
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl B9RWH4_RICCO 318 54.9 61.3 (tr|B9RWH4) Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1019500 PE=4 SV=1
Arabidopsis_pep AT4G13620.1 155 42.1 54.1 | Symbols: | AP2 domain-containing transcription factor, putative | chr4:7932138-7933304 FORWARD
soybean_pep Glyma20g33890.1 144 35.3 46.1  
Medicago_pep IMGA|Medtr1g111860.1 144 37.8 46.7 Pathogenesis-related transcriptional factor and ERF chr01_pseudomolecule_IMGAG_V3 23947992-23949493 E EGN_Mt090430 20090702
grape_pep GSVIVT01021060001 210 43.5 52.1  
castor_bean_cds 29904.m002941 228 91.1 91.1 hypothetical protein
castor_bean_pep 29904.m002941 318 54.9 61.3 hypothetical protein
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c00459 77.8 83.2 83.2  
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0122821.10 length: 295 aa.
IPR001471 Pathogenesis-related transcriptional factor/ERF, DNA-binding
method AccNumber shortName E-value location
Molecular Function GO:0003700 transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
FPrintScan PR00367 ETHRSPELEMNT 4.9e-11 238-249
260-276
Gene3D G3DSA:3.30.730.10 no description 4.3e-23 236-294
HMMPfam PF00847 AP2 1e-16 238-286
HMMSmart SM00380 no description 7.6e-31 237-295
ProfileScan PS51032 AP2_ERF 22.524 237-294
IPR016177 DNA-binding, integrase-type
Molecular Function GO:0003677 DNA binding    
superfamily SSF54171 DNA-binding 3.1e-23 236-295
no_ID  
Seg seg seg NA 44-57
117-129
269-283