Jatropha Genome Database

JcCA0076141.10 (JcS_104103.30)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0076141
Scaffold:
JcS_104103 JcCB0173851(+) =JcCB0113371(+) =JcCA0076141(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl D7TX54_VITVI 336 80.3 86.5 (tr|D7TX54) Whole genome shotgun sequence of line PN40024, scaffold_84.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00036611001 PE=4 SV=1
Arabidopsis_pep AT5G09860.1 309 74.6 82.9 | Symbols: | nuclear matrix protein-related | chr5:3066815-3070733 FORWARD
soybean_pep Glyma04g16810.1 298 73.6 80.8  
Medicago_pep IMGA|Medtr3g005340.1 297 72.0 81.3 hypothetical protein chr03_pseudomolecule_IMGAG_V3 250110-240700 E EGN_Mt090430 20090702
grape_pep GSVIVT01036611001 336 80.3 86.5  
castor_bean_cds 30040.m000265 1213 88.3 88.3 nuclear matrix protein, putative
castor_bean_pep 30040.m000265 333 81.3 86.0 nuclear matrix protein, putative
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c06185 1023 99.8 99.8  
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0076141.10 length: 362 aa.
IPR021861 THO complex, subunit THOC1
method AccNumber shortName E-value location
HMMPfam PF11957 efThoc1 6.9e-51 172-361
no_ID  
Coil coil coiled-coil NA 206-227
270-291
HMMPanther PTHR13265 THO 6.2e-60 172-362
Seg seg seg NA 35-53
208-221