Jatropha Genome Database

JcCA0075411.20 (JcS_100034.120)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0075411
Scaffold:
JcS_100034 JcCB0189361(+) =JcCA0199801(-) =JcCB0216831(+) =JcCA0149441(-) =JcCA0036251(+) =JcCA0047351(-) =JcCA0076481(-) =JcCB0268591(-) =JcCB0646891(-) =JcCA0075411(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9R980_RICCO 106 68.4 83.5 (tr|B9R980) DNA binding protein, putative OS=Ricinus communis GN=RCOM_1514750 PE=4 SV=1
Arabidopsis_pep AT3G28857.1 77.4 49.4 79.7 | Symbols: | transcription regulator | chr3:10855781-10856313 REVERSE
soybean_pep Glyma06g20520.1 87.8 54.3 79.0  
Medicago_pep IMGA|Medtr5g040160.1 73.6 47.4 73.1 Helix-loop-helix DNA-binding chr05_pseudomolecule_IMGAG_V3 17108849-17107589 F EGN_Mt090430 20090702
grape_pep GSVIVT01008030001 95.5 65.8 81.0  
castor_bean_cds 30147.m014106 103 82.6 82.6 DNA binding protein, putative
castor_bean_pep 30147.m014106 106 68.4 83.5 DNA binding protein, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0075411.20 length: 92 aa.
IPR001092 Helix-loop-helix DNA-binding domain
method AccNumber shortName E-value location
Molecular Function GO:0030528 transcription regulator activity    
Biological Process GO:0045449 regulation of transcription    
HMMPfam PF00010 HLH 7.3e-05 18-58
IPR011598 Helix-loop-helix DNA-binding
Cellular Component GO:0005634 nucleus    
Molecular Function GO:0030528 transcription regulator activity    
Biological Process GO:0045449 regulation of transcription    
superfamily SSF47459 HLH, 9.9e-07 16-80
no_ID  
Coil coil coiled-coil NA 54-75
Seg seg seg NA 2-12