Jatropha Genome Database

JcCA0071361.10 (JcS_201554.10)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0071361
Scaffold:
JcS_201554 JcPR03DJJPX(-) =JcCA0071361(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9S4N7_RICCO 320 81.4 82.4 (tr|B9S4N7) Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_0990360 PE=4 SV=1
Arabidopsis_pep AT1G03840.1 275 89.1 96.4 | Symbols: MGP | MGP (Magpie); nucleic acid binding / protein binding / transcription factor/ zinc ion binding | chr1:967596-970058 REVERSE
soybean_pep Glyma19g34220.1 295 74.6 78.8  
Medicago_pep IMGA|Medtr8g018830.1 275 89.8 95.6 Zinc finger, C2H2-type chr08_pseudomolecule_IMGAG_V3 3503403-3500493 E EGN_Mt090430 20090702
grape_pep GSVIVT01003119001 296 84.8 87.8  
castor_bean_cds 29883.m001956 640 89.3 89.3 nucleic acid binding protein, putative
castor_bean_pep 29883.m001956 320 81.4 82.4 nucleic acid binding protein, putative
JAT_13201ests gi|268522602|gb|FM896643.1|FM896643 418 99.1 99.1 FM896643 Jatropha curcas embryo 71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_003913, mRNA sequence
KJC_r1 KJC_c03906 611 99.1 99.1  
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0071361.10 length: 208 aa.
IPR007087 Zinc finger, C2H2-type
method AccNumber shortName E-value location
Cellular Component GO:0005622 intracellular    
Molecular Function GO:0008270 zinc ion binding    
PatternScan PS00028 ZINC_FINGER_C2H2_1 NA 76-96
ProfileScan PS50157 ZINC_FINGER_C2H2_2 10.949 74-96
IPR015880 Zinc finger, C2H2-like
Cellular Component GO:0005622 intracellular    
Molecular Function GO:0008270 zinc ion binding    
HMMSmart SM00355 no description 1.7e+02 74-96
115-145
150-170
no_ID  
HMMPanther PTHR10593 SERINE/THREONINE-PROTEIN 2.9e-08 115-180
HMMPanther PTHR10593:SF10 UNCHARACTERIZED 2.9e-08 115-180
HMMPfam PF12171 zf-C2H2_jaz 2.1e-05 73-96
Seg seg seg NA 7-20
34-47
185-202
superfamily SSF57667 C2H2 3.9e-05 132-176
73-98