Jatropha Genome Database

JcCA0066621.20 (JcS_202865.20)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0066621
Scaffold:
JcS_202865 JcCD0064942(+) =JcCA0066621(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl B9RK18_RICCO 590 87.1 94.0 (tr|B9RK18) Replication factor A 1, rfa1, putative OS=Ricinus communis GN=RCOM_1045930 PE=4 SV=1
Arabidopsis_pep AT2G06510.1 491 73.1 88.0 | Symbols: ATRPA1A, RPA1A, RPA70A, ATRPA70A | RPA1A (REPLICATION PROTEIN A 1A); DNA binding / nucleic acid binding | chr2:2585215-2587601 FORWARD
soybean_pep Glyma15g19090.1 522 75.2 90.3  
Medicago_pep IMGA|Medtr3g061820.1 452 64.7 82.4 Replication factor-A protein 1, N-terminal chr03_pseudomolecule_IMGAG_V3 14128530-14131311 E EGN_Mt090430 20090702
grape_pep GSVIVT01015111001 544 79.8 91.5  
castor_bean_cds 29912.m005276 963 87.9 87.9 replication factor A 1, rfa1, putative
castor_bean_pep 29912.m005276 590 87.1 94.0 replication factor A 1, rfa1, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0066621.20 length: 319 aa.
IPR012340 Nucleic acid-binding, OB-fold
method AccNumber shortName E-value location
Gene3D G3DSA:2.40.50.140 no description 7.1e-44 1-120
133-319
IPR013955 Replication factor A, C-terminal
HMMPfam PF08646 Rep_fac-A_C 2.8e-52 158-309
IPR016027 Nucleic acid-binding, OB-fold-like
superfamily SSF50249 Nucleic 2e-22 139-319
3-124
no_ID  
HMMPanther PTHR23273 REPLICATION 1.8e-69 1-230