Jatropha Genome Database

JcCA0029051.30 (JcS_109353.40)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0029051
Scaffold:
JcS_109353 JcCB0285121(+) =JcCA0029051(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9RIC0_RICCO 345 59.9 71.5 (tr|B9RIC0) Origin recognition complex subunit, putative OS=Ricinus communis GN=RCOM_1577650 PE=4 SV=1
Arabidopsis_pep AT4G12620.1 207 43.9 56.1 | Symbols: ORC1B, ATORC1B, UNE13 | ORC1B (ORIGIN OF REPLICATION COMPLEX 1B); DNA binding / double-stranded methylated DNA binding / protein binding | chr4:7459812-7462253 REVERSE
soybean_pep Glyma15g03900.1 266 50.7 61.5  
Medicago_pep IMGA|Medtr3g079590.1 65.1 84.2 94.7 hypothetical protein chr03_pseudomolecule_IMGAG_V3 18480668-18479489 E EGN_Mt090430 20090702
grape_pep GSVIVT01025279001 221 49.3 59.2  
castor_bean_cds 30169.m006435 404 87.0 87.0 origin recognition complex subunit, putative
castor_bean_pep 30169.m006435 345 59.9 71.5 origin recognition complex subunit, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0029051.30 length: 354 aa.
IPR001965 Zinc finger, PHD-type
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
Molecular Function GO:0008270 zinc ion binding    
HMMSmart SM00249 no description 1.6e-08 249-294
IPR011011 Zinc finger, FYVE/PHD-type
Molecular Function GO:0008270 zinc ion binding    
superfamily SSF57903 FYVE/PHD 1.1e-14 241-312
IPR019786 Zinc finger, PHD-type, conserved site
PatternScan PS01359 ZF_PHD_1 NA 250-293
IPR019787 Zinc finger, PHD-finger
HMMPfam PF00628 PHD 1.8e-09 250-295
ProfileScan PS50016 ZF_PHD_2 9.686 247-296
no_ID  
Gene3D G3DSA:3.30.40.10 no description 3.7e-15 223-312
HMMPanther PTHR22880 FALZ-RELATED 9.1e-08 250-323
HMMPanther PTHR22880:SF4 BROMODOMAIN 9.1e-08 250-323
Seg seg seg NA 97-107
153-162
179-190