Jatropha Genome Database

JcCA0028681.10 (JcS_201332.30)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0028681
Scaffold:
JcS_201332 JcCA0302221(+) =JcCA0028681(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9SX30_RICCO 770 81.1 86.0 (tr|B9SX30) Isopropylmalate synthase, putative OS=Ricinus communis GN=RCOM_1267040 PE=3 SV=1
Arabidopsis_pep AT1G74040.1 721 86.6 94.6 | Symbols: IMS1, MAML-3, IPMS2 | IMS1 (2-ISOPROPYLMALATE SYNTHASE 1); 2-isopropylmalate synthase | chr1:27842258-27845566 FORWARD
soybean_pep Glyma20g38950.3 707 85.1 93.8  
Medicago_pep IMGA|Medtr1g146810.1 685 81.7 92.0 Alpha-isopropylmalate/homocitrate synthase; chr01_pseudomolecule_IMGAG_V3 32578362-32586181 F EGN_Mt090430 20090702
grape_pep GSVIVT01013566001 361 76.4 84.5  
castor_bean_cds 30041.m000240 1063 87.0 87.0 isopropylmalate synthase, putative
castor_bean_pep 30041.m000240 770 81.1 86.0 isopropylmalate synthase, putative
JAT_13201ests gi|237680739|gb|GO246951.1|GO246951 894 95.1 95.1 JcrME_RL0495 Expressed sequence tags from Jatropha curcas root cDNA library Jatropha curcas cDNA, mRNA sequence
KJC_r1 KJC_c00616 2583 100.0 100.0  
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0028681.10 length: 468 aa.
IPR000891 Pyruvate carboxyltransferase
method AccNumber shortName E-value location
Molecular Function GO:0003824 catalytic activity    
HMMPfam PF00682 HMGL-like 1.4e-77 99-346
ProfileScan PS50991 PYR_CT 42.068 91-364
IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site
Biological Process GO:0019752 carboxylic acid metabolic process    
Molecular Function GO:0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer    
PatternScan PS00815 AIPM_HOMOCIT_SYNTH_1 NA 98-114
IPR013785 Aldolase-type TIM barrel
Molecular Function GO:0003824 catalytic activity    
Biological Process GO:0008152 metabolic process    
Gene3D G3DSA:3.20.20.70 no description 5.2e-72 83-374
no_ID  
HMMPanther PTHR10277 ISOPROPYLMALATE 9.7e-161 198-468
HMMPanther PTHR10277:SF9 ISOPROPYLMALATE 9.7e-161 198-468
Seg seg seg NA 37-50
61-78
superfamily SSF51569 Aldolase 1.1e-92 91-388