Jatropha Genome Database

JcCA0028191.10 (JcS_100071.70)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0028191
Scaffold:
JcS_100071 JcCB0184671(-) =JcCB0836821(-) =JcCA0028161(-) =JcCB0231061(-) =JcCA0296561(+) =JcCB0975431(+) =JcCA0028191(+) =JcCA0038461(+) =JcCB0109661(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9T274_RICCO 386 79.0 84.4 (tr|B9T274) LIGULELESS1 protein, putative OS=Ricinus communis GN=RCOM_0413690 PE=4 SV=1
Arabidopsis_pep AT2G42200.1 138 39.1 52.7 | Symbols: SPL9 | SPL9 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 9); transcription factor | chr2:17587601-17589451 FORWARD
soybean_pep Glyma19g32800.1 251 53.5 69.0  
Medicago_pep IMGA|Medtr7g111590.1 207 48.4 62.4 SBP chr07_pseudomolecule_IMGAG_V3 26270007-26266156 E EGN_Mt090430 20090702
grape_pep GSVIVT01033519001 325 65.9 77.5  
castor_bean_cds 29269.m000250 833 85.5 85.5 LIGULELESS1 protein, putative
castor_bean_pep 29269.m000250 386 79.0 84.4 LIGULELESS1 protein, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0028191.10 length: 320 aa.
IPR004333 Transcription factor, SBP-box
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
HMMPfam PF03110 SBP 7.3e-13 68-97
ProfileScan PS51141 ZF_SBP 13.144 11-96
superfamily SSF103612 SBT 3.1e-13 68-104
no_ID  
Seg seg seg NA 179-191