Jatropha Genome Database

JcCA0020001.20 (JcS_103117.20)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0020001
Scaffold:
JcS_103117 JcCA0020001(+) =JcCB0086771(+) =JcCB0183081(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9RXQ0_RICCO 746 76.6 87.0 (tr|B9RXQ0) Tryptophan synthase beta chain, putative OS=Ricinus communis GN=RCOM_0905390 PE=4 SV=1
Arabidopsis_pep AT5G28237.1 600 74.2 84.5 | Symbols: | tryptophan synthase, beta subunit, putative | chr5:10207477-10213542 REVERSE
soybean_pep Glyma11g00580.1 561 69.9 83.4  
Medicago_pep IMGA|Medtr5g005850.1 577 73.4 86.0 Tryptophan synthase, beta chain and related chr05_pseudomolecule_IMGAG_V3 392806-397039 E EGN_Mt090430 20090702
grape_pep GSVIVT01012644001 656 79.9 90.9  
castor_bean_cds 29842.m003632 634 81.9 81.9 tryptophan synthase beta chain, putative
castor_bean_pep 29842.m003632 746 76.6 87.0 tryptophan synthase beta chain, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0020001.20 length: 470 aa.
IPR001926 Pyridoxal phosphate-dependent enzyme, beta subunit
method AccNumber shortName E-value location
Molecular Function GO:0003824 catalytic activity    
Biological Process GO:0008152 metabolic process    
Molecular Function GO:0030170 pyridoxal phosphate binding    
HMMPfam PF00291 PALP 1.3e-38 122-430
superfamily SSF53686 Tryptophan 1.4e-127 69-460
IPR006653 Tryptophan synthase, beta chain, conserved site
Molecular Function GO:0004834 tryptophan synthase activity    
Biological Process GO:0006568 tryptophan metabolic process    
PatternScan PS00168 TRP_SYNTHASE_BETA NA 153-167
IPR006654 Tryptophan synthase, beta chain
Molecular Function GO:0004834 tryptophan synthase activity    
Biological Process GO:0006568 tryptophan metabolic process    
HMMTigr TIGR00263 trpB: 3.8e-203 74-460
no_ID  
Gene3D G3DSA:3.40.50.1100 no description 2.3e-79 243-466
HAMAP MF_00133 TRPB_MF_00133 45.075 69-460
HMMPanther PTHR10314 SER/THR 2.2e-168 83-459
HMMPanther PTHR10314:SF3 TRYPTOPHAN 2.2e-168 83-459