Jatropha Genome Database

JcPR14IO7F0.10
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcPR14IO7F0.10 + phase: 2 /pseudo/partial/short
         (39 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9I019_POPTR (tr|B9I019) Ubiquitin carboxyl-terminal hydrolase O...    54   6e-06

>B9I019_POPTR (tr|B9I019) Ubiquitin carboxyl-terminal hydrolase OS=Populus
           trichocarpa GN=POPTRDRAFT_1094402 PE=3 SV=1
          Length = 809

 Score = 53.9 bits (128), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/32 (78%), Positives = 26/32 (81%)

Query: 1   YYMNQSLKTAFEMAPADPTVDLNMQL*VILHS 32
           YY NQSLK AFEMAPADPTVDLNMQL  + H 
Sbjct: 336 YYTNQSLKMAFEMAPADPTVDLNMQLTKLAHG 367