Jatropha Genome Database

JcPR03EVQAR.10
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcPR03EVQAR.10 + phase: 0 /partial/short
         (46 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9RD93_RICCO (tr|B9RD93) Beta-tubulin cofactor d, putative OS=Ri...    74   4e-12
B9IBX8_POPTR (tr|B9IBX8) Tubulin folding cofactor (Fragment) OS=...    70   9e-11
D7U7W2_VITVI (tr|D7U7W2) Whole genome shotgun sequence of line P...    69   2e-10
D7LRU0_ARALY (tr|D7LRU0) Tubulin folding cofactor D OS=Arabidops...    60   7e-08
D7KRV6_ARALY (tr|D7KRV6) Predicted protein OS=Arabidopsis lyrata...    60   8e-08
Q8L5R3_ARATH (tr|Q8L5R3) Tubulin folding cofactor D OS=Arabidops...    58   4e-07
Q9LZY9_ARATH (tr|Q9LZY9) Beta-tubulin cofactor-like protein OS=A...    58   4e-07

>B9RD93_RICCO (tr|B9RD93) Beta-tubulin cofactor d, putative OS=Ricinus communis
           GN=RCOM_1611170 PE=4 SV=1
          Length = 1260

 Score = 74.3 bits (181), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/37 (91%), Positives = 35/37 (94%)

Query: 6   FFSFIEWTHEVLSSGTDDVMSHFRLLGVVEALAAIFK 42
           F SF EWTHEVLSSGTDDVMSHF+LLGVVEALAAIFK
Sbjct: 244 FTSFTEWTHEVLSSGTDDVMSHFQLLGVVEALAAIFK 280


>B9IBX8_POPTR (tr|B9IBX8) Tubulin folding cofactor (Fragment) OS=Populus
           trichocarpa GN=TFCFD PE=4 SV=1
          Length = 1253

 Score = 69.7 bits (169), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 32/37 (86%), Positives = 33/37 (89%)

Query: 6   FFSFIEWTHEVLSSGTDDVMSHFRLLGVVEALAAIFK 42
           F SFIEWTHEVLSSGTDD  SHF+LLG VEALAAIFK
Sbjct: 230 FTSFIEWTHEVLSSGTDDFSSHFQLLGAVEALAAIFK 266


>D7U7W2_VITVI (tr|D7U7W2) Whole genome shotgun sequence of line PN40024,
           scaffold_48.assembly12x (Fragment) OS=Vitis vinifera
           GN=VIT_00027657001 PE=4 SV=1
          Length = 1255

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/37 (86%), Positives = 33/37 (89%)

Query: 6   FFSFIEWTHEVLSSGTDDVMSHFRLLGVVEALAAIFK 42
           F SF+EWTHEVLSS TDDVM  FRLLGVVEALAAIFK
Sbjct: 248 FTSFVEWTHEVLSSNTDDVMDLFRLLGVVEALAAIFK 284


>D7LRU0_ARALY (tr|D7LRU0) Tubulin folding cofactor D OS=Arabidopsis lyrata subsp.
           lyrata GN=ARALYDRAFT_907605 PE=4 SV=1
          Length = 1255

 Score = 60.1 bits (144), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 27/37 (72%), Positives = 30/37 (81%)

Query: 6   FFSFIEWTHEVLSSGTDDVMSHFRLLGVVEALAAIFK 42
           F SF EWTHEVLS   D V +HFRLLGV+EAL+AIFK
Sbjct: 253 FSSFFEWTHEVLSCKEDSVTNHFRLLGVMEALSAIFK 289


>D7KRV6_ARALY (tr|D7KRV6) Predicted protein OS=Arabidopsis lyrata subsp. lyrata
           GN=ARALYDRAFT_675871 PE=4 SV=1
          Length = 1270

 Score = 60.1 bits (144), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 27/37 (72%), Positives = 32/37 (86%)

Query: 6   FFSFIEWTHEVLSSGTDDVMSHFRLLGVVEALAAIFK 42
           F SF EWTHEVLSS  D V+++FRL+GV+EALAAIFK
Sbjct: 245 FASFFEWTHEVLSSKEDSVVNNFRLIGVMEALAAIFK 281


>Q8L5R3_ARATH (tr|Q8L5R3) Tubulin folding cofactor D OS=Arabidopsis thaliana
           GN=At3g60740 PE=2 SV=1
          Length = 1254

 Score = 57.8 bits (138), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/37 (70%), Positives = 30/37 (81%)

Query: 6   FFSFIEWTHEVLSSGTDDVMSHFRLLGVVEALAAIFK 42
           F SF EWT+EVLS   D V +HFRLLGV+EAL+AIFK
Sbjct: 253 FSSFFEWTYEVLSCKEDSVTNHFRLLGVMEALSAIFK 289


>Q9LZY9_ARATH (tr|Q9LZY9) Beta-tubulin cofactor-like protein OS=Arabidopsis
           thaliana GN=T4C21_150 PE=4 SV=1
          Length = 1249

 Score = 57.8 bits (138), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/37 (70%), Positives = 30/37 (81%)

Query: 6   FFSFIEWTHEVLSSGTDDVMSHFRLLGVVEALAAIFK 42
           F SF EWT+EVLS   D V +HFRLLGV+EAL+AIFK
Sbjct: 253 FSSFFEWTYEVLSCKEDSVTNHFRLLGVMEALSAIFK 289