Jatropha Genome Database

JcCD0135314.10
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0135314.10 - phase: 0 /pseudo/partial
         (73 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9SP49_RICCO (tr|B9SP49) Putative uncharacterized protein OS=Ric...    63   8e-09
B8LM25_PICSI (tr|B8LM25) Putative uncharacterized protein OS=Pic...    57   6e-07
B9HGX4_POPTR (tr|B9HGX4) Predicted protein OS=Populus trichocarp...    56   1e-06

>B9SP49_RICCO (tr|B9SP49) Putative uncharacterized protein OS=Ricinus communis
           GN=RCOM_0617850 PE=4 SV=1
          Length = 400

 Score = 63.2 bits (152), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 32/50 (64%), Positives = 36/50 (72%), Gaps = 1/50 (2%)

Query: 13  ISFWVEANLYFQFVSFLCCFPFTQMAGQVKCHKYSRRRPSEGWNFTVEKM 62
           IS   +  LY +FV  +  F   +MAGQVKCHKYSRRR SEGWNFTVEKM
Sbjct: 306 ISMKEDEMLYQEFVQKMN-FNKMKMAGQVKCHKYSRRRSSEGWNFTVEKM 354


>B8LM25_PICSI (tr|B8LM25) Putative uncharacterized protein OS=Picea sitchensis
           PE=2 SV=1
          Length = 397

 Score = 57.0 bits (136), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 25/42 (59%), Positives = 32/42 (76%), Gaps = 1/42 (2%)

Query: 21  LYFQFVSFLCCFPFTQMAGQVKCHKYSRRRPSEGWNFTVEKM 62
           LY +FV  +  F   Q+AG+VKCHKYSRRRP EGW FT+E++
Sbjct: 312 LYQEFVQRMN-FNKEQIAGKVKCHKYSRRRPPEGWKFTIEEL 352


>B9HGX4_POPTR (tr|B9HGX4) Predicted protein OS=Populus trichocarpa
           GN=POPTRDRAFT_1081938 PE=4 SV=1
          Length = 397

 Score = 55.8 bits (133), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/40 (65%), Positives = 30/40 (75%), Gaps = 1/40 (2%)

Query: 21  LYFQFVSFLCCFPFTQMAGQVKCHKYSRRRPSEGWNFTVE 60
           LY +FV     F   ++AGQVKCHKYSRRR S+GWNFTVE
Sbjct: 309 LYQEFV-LRMNFNKMKLAGQVKCHKYSRRRTSQGWNFTVE 347