Jatropha Genome Database

JcCD0062953.10
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0062953.10 - phase: 2 /pseudo/partial
         (76 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9H6T4_POPTR (tr|B9H6T4) Predicted protein OS=Populus trichocarp...    57   6e-07

>B9H6T4_POPTR (tr|B9H6T4) Predicted protein OS=Populus trichocarpa
           GN=POPTRDRAFT_558983 PE=4 SV=1
          Length = 167

 Score = 57.0 bits (136), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/34 (73%), Positives = 30/34 (88%)

Query: 32  TPVDIKPSIMEGEYSGNQDEHGTPEDPSKAVTEG 65
           TP+D+KPSIMEGE+SGNQDEHGT ++  KAV EG
Sbjct: 117 TPIDVKPSIMEGEFSGNQDEHGTAKNLPKAVNEG 150