Jatropha Genome Database

JcCD0056747.10
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0056747.10 + phase: 0 /pseudo/partial
         (77 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9HCY9_POPTR (tr|B9HCY9) Predicted protein OS=Populus trichocarp...    68   4e-10
D7TQF7_VITVI (tr|D7TQF7) Whole genome shotgun sequence of line P...    64   4e-09
B4FQ56_MAIZE (tr|B4FQ56) Putative uncharacterized protein OS=Zea...    64   7e-09
C4J3L7_MAIZE (tr|C4J3L7) Putative uncharacterized protein OS=Zea...    64   8e-09
B4FVI8_MAIZE (tr|B4FVI8) Putative uncharacterized protein OS=Zea...    63   8e-09
B4F833_MAIZE (tr|B4F833) Diaminopimelate epimerase OS=Zea mays P...    62   2e-08

>B9HCY9_POPTR (tr|B9HCY9) Predicted protein OS=Populus trichocarpa
           GN=POPTRDRAFT_717427 PE=3 SV=1
          Length = 314

 Score = 67.8 bits (164), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/80 (51%), Positives = 42/80 (52%), Gaps = 3/80 (3%)

Query: 1   FVQVYSHSHLKMCVWERGGVQPXPVER---AXXXXXXXXXXXXXXXXXXXXXXXXEIEWR 57
           FVQVYS SHLKM VWERG            A                        EIEWR
Sbjct: 233 FVQVYSPSHLKMRVWERGAGATLACGTGACATVVAAVLEGRAGRNCTVDLPGGPLEIEWR 292

Query: 58  EENNHVYMTGPAEVVFYGSV 77
           EE+NHVYMTGPAEVVFYGSV
Sbjct: 293 EEDNHVYMTGPAEVVFYGSV 312


>D7TQF7_VITVI (tr|D7TQF7) Whole genome shotgun sequence of line PN40024,
           scaffold_40.assembly12x (Fragment) OS=Vitis vinifera
           GN=VIT_00025612001 PE=4 SV=1
          Length = 307

 Score = 64.3 bits (155), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 37/80 (46%), Positives = 40/80 (50%), Gaps = 3/80 (3%)

Query: 1   FVQVYSHSHLKMCVWERGGVQPXPVERAXXXXXXXXXXXXXXXXXXXXXXX---XEIEWR 57
           FVQV S SHLKM VWERG                                     +IEWR
Sbjct: 226 FVQVISRSHLKMRVWERGAGATLACGTGACAVVVAAVLEGHAGRSCTVDLPGGPLDIEWR 285

Query: 58  EENNHVYMTGPAEVVFYGSV 77
           EE+NHVYMTGPAE+VFYGSV
Sbjct: 286 EEDNHVYMTGPAEIVFYGSV 305


>B4FQ56_MAIZE (tr|B4FQ56) Putative uncharacterized protein OS=Zea mays PE=2 SV=1
          Length = 308

 Score = 63.5 bits (153), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 38/80 (47%), Positives = 40/80 (50%), Gaps = 3/80 (3%)

Query: 1   FVQVYSHSHLKMCVWERGGVQPXPVERAXXXXXXXXXXXXXXXXXXXXXXX---XEIEWR 57
           FVQV S SHLKM VWERG                                     EIEWR
Sbjct: 227 FVQVLSRSHLKMRVWERGAGATLACGTGACAVVVAAVLEGRAERKCVVDLPGGPLEIEWR 286

Query: 58  EENNHVYMTGPAEVVFYGSV 77
           E++NHVYMTGPAEVVFYGSV
Sbjct: 287 EDDNHVYMTGPAEVVFYGSV 306


>C4J3L7_MAIZE (tr|C4J3L7) Putative uncharacterized protein OS=Zea mays PE=2 SV=1
          Length = 350

 Score = 63.5 bits (153), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 38/80 (47%), Positives = 40/80 (50%), Gaps = 3/80 (3%)

Query: 1   FVQVYSHSHLKMCVWERGGVQPXPVERAXXXXXXXXXXXXXXXXXXXXXXX---XEIEWR 57
           FVQV S SHLKM VWERG                                     EIEWR
Sbjct: 269 FVQVLSRSHLKMRVWERGAGATLACGTGACAVVVAAVLEGRAERKCVVDLPGGPLEIEWR 328

Query: 58  EENNHVYMTGPAEVVFYGSV 77
           E++NHVYMTGPAEVVFYGSV
Sbjct: 329 EDDNHVYMTGPAEVVFYGSV 348


>B4FVI8_MAIZE (tr|B4FVI8) Putative uncharacterized protein OS=Zea mays PE=2 SV=1
          Length = 353

 Score = 63.2 bits (152), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 38/80 (47%), Positives = 40/80 (50%), Gaps = 3/80 (3%)

Query: 1   FVQVYSHSHLKMCVWERGGVQPXPVERAXXXXXXXXXXXXXXXXXXXXXXX---XEIEWR 57
           FVQV S SHLKM VWERG                                     EIEWR
Sbjct: 272 FVQVLSRSHLKMRVWERGAGATLACGTGACAVVVAAVLEGRAERKCVVDLPGGPLEIEWR 331

Query: 58  EENNHVYMTGPAEVVFYGSV 77
           E++NHVYMTGPAEVVFYGSV
Sbjct: 332 EDDNHVYMTGPAEVVFYGSV 351


>B4F833_MAIZE (tr|B4F833) Diaminopimelate epimerase OS=Zea mays PE=2 SV=1
          Length = 352

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/80 (46%), Positives = 39/80 (48%), Gaps = 3/80 (3%)

Query: 1   FVQVYSHSHLKMCVWERGGVQPXPVERAXXXXXXXXXXXXXXXXXXXXXXX---XEIEWR 57
           FVQV S SHLKM VWERG                                     EIEWR
Sbjct: 271 FVQVLSRSHLKMRVWERGAGATLACGTGACAVVVAAVLEGRAERKCVVDLPGGPLEIEWR 330

Query: 58  EENNHVYMTGPAEVVFYGSV 77
           E++NHVYMTGPAE VFYGSV
Sbjct: 331 EDDNHVYMTGPAEAVFYGSV 350