Jatropha Genome Database

JcCB0984411.10
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0984411.10 + phase: 2 /partial
         (88 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9T3T9_RICCO (tr|B9T3T9) Early nodulin 55-2, putative OS=Ricinus...    67   6e-10
B9IK25_POPTR (tr|B9IK25) Predicted protein OS=Populus trichocarp...    66   1e-09

>B9T3T9_RICCO (tr|B9T3T9) Early nodulin 55-2, putative OS=Ricinus communis
          GN=RCOM_0169220 PE=4 SV=1
          Length = 168

 Score = 67.0 bits (162), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 41/55 (74%), Gaps = 1/55 (1%)

Query: 5  KKKIARLVIVVAVMMILKGADCELIKIGKSGWIPNYNYTEWLSQNPEQFHVGDWL 59
          K++IA +++    +MI K A+  L+KIG+ GWIP+YNYTEWL+Q    F+VGDWL
Sbjct: 4  KRRIAGMIMAAMAVMI-KCAESRLLKIGERGWIPDYNYTEWLNQRHNHFYVGDWL 57


>B9IK25_POPTR (tr|B9IK25) Predicted protein OS=Populus trichocarpa
          GN=POPTRDRAFT_577694 PE=4 SV=1
          Length = 175

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/65 (50%), Positives = 44/65 (67%), Gaps = 6/65 (9%)

Query: 1  ESSVKKKIARLVI-----VVAVMMILKGADCE-LIKIGKSGWIPNYNYTEWLSQNPEQFH 54
          E+S +  I + V+      V VMMI++ A  E L K+G  GWIPNYNYT+WL+Q+ E F+
Sbjct: 2  ENSGRTTIGKTVLSMAITAVTVMMIVECAAAEQLYKVGSRGWIPNYNYTDWLNQSHEHFY 61

Query: 55 VGDWL 59
          VGDWL
Sbjct: 62 VGDWL 66