Jatropha Genome Database
- JcCB0838301.10
BLASTP 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0838301.10 + phase: 2 /partial
(51 letters)
Database: trembl
11,636,205 sequences; 3,746,823,912 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
B9SB22_RICCO (tr|B9SB22) 3-hydroxyisobutyrate dehydrogenase, put... 61 4e-08
B9GH10_POPTR (tr|B9GH10) Predicted protein OS=Populus trichocarp... 59 1e-07
D7MFG9_ARALY (tr|D7MFG9) Putative uncharacterized protein OS=Ara... 59 2e-07
B6TJR8_MAIZE (tr|B6TJR8) 3-hydroxyisobutyrate dehydrogenase OS=Z... 59 2e-07
Q1ECP8_ARATH (tr|Q1ECP8) 3-hydroxyisobutyrate dehydrogenase-like... 59 2e-07
B6SHU3_MAIZE (tr|B6SHU3) 3-hydroxyisobutyrate dehydrogenase OS=Z... 58 3e-07
C6TE36_SOYBN (tr|C6TE36) Putative uncharacterized protein OS=Gly... 58 4e-07
D7TKK7_VITVI (tr|D7TKK7) Whole genome shotgun sequence of line P... 57 6e-07
A5BDW0_VITVI (tr|A5BDW0) Putative uncharacterized protein (Fragm... 55 2e-06
A9RSI5_PHYPA (tr|A9RSI5) Predicted protein OS=Physcomitrella pat... 54 6e-06
>B9SB22_RICCO (tr|B9SB22) 3-hydroxyisobutyrate dehydrogenase, putative OS=Ricinus
communis GN=RCOM_1337110 PE=4 SV=1
Length = 388
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/45 (64%), Positives = 33/45 (73%)
Query: 1 DSYNPVPGVMQGVPASRDYTGGFSSKLMVGGLSLHLLIFKCVSRT 45
DSYNPVPGVM+GVPASR+Y GGF+SKLM L+L K V T
Sbjct: 306 DSYNPVPGVMEGVPASRNYAGGFASKLMTKDLNLAAASAKAVDFT 350
>B9GH10_POPTR (tr|B9GH10) Predicted protein OS=Populus trichocarpa
GN=POPTRDRAFT_550610 PE=4 SV=1
Length = 347
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 30/34 (88%)
Query: 1 DSYNPVPGVMQGVPASRDYTGGFSSKLMVGGLSL 34
DSYNPVPGVM+GVPASR+Y GGF+SKLM L+L
Sbjct: 265 DSYNPVPGVMEGVPASRNYAGGFASKLMAKDLNL 298
>D7MFG9_ARALY (tr|D7MFG9) Putative uncharacterized protein OS=Arabidopsis lyrata
subsp. lyrata GN=ARALYDRAFT_329506 PE=4 SV=1
Length = 372
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 30/34 (88%)
Query: 1 DSYNPVPGVMQGVPASRDYTGGFSSKLMVGGLSL 34
D+YNPVPGVM+GVP+SRDY GGF+SKLM L+L
Sbjct: 290 DAYNPVPGVMKGVPSSRDYNGGFASKLMAKDLNL 323
>B6TJR8_MAIZE (tr|B6TJR8) 3-hydroxyisobutyrate dehydrogenase OS=Zea mays PE=2
SV=1
Length = 337
Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/46 (58%), Positives = 35/46 (76%), Gaps = 5/46 (10%)
Query: 1 DSYNPVPGVMQGVPASRDYTGGFSSKLMVGGLSLHL-----LIFKC 41
D+YNPVPGVM+GVP+SR+Y+GGF+SKLM L L + + FKC
Sbjct: 255 DTYNPVPGVMEGVPSSRNYSGGFTSKLMAKDLDLAMASASGVGFKC 300
>Q1ECP8_ARATH (tr|Q1ECP8) 3-hydroxyisobutyrate dehydrogenase-like protein
OS=Arabidopsis thaliana GN=At4g20930 PE=2 SV=1
Length = 347
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 30/34 (88%)
Query: 1 DSYNPVPGVMQGVPASRDYTGGFSSKLMVGGLSL 34
D+YNPVPGVM+GVP+SRDY GGF+SKLM L+L
Sbjct: 265 DAYNPVPGVMKGVPSSRDYNGGFASKLMAKDLNL 298
>B6SHU3_MAIZE (tr|B6SHU3) 3-hydroxyisobutyrate dehydrogenase OS=Zea mays PE=2
SV=1
Length = 342
Score = 58.2 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/46 (58%), Positives = 35/46 (76%), Gaps = 5/46 (10%)
Query: 1 DSYNPVPGVMQGVPASRDYTGGFSSKLMVGGLSLHL-----LIFKC 41
D+YNPVPGVM+GVP+SR+Y+GGF+SKLM L L + + FKC
Sbjct: 260 DTYNPVPGVMEGVPSSRNYSGGFTSKLMAKDLDLAMASASGVGFKC 305
>C6TE36_SOYBN (tr|C6TE36) Putative uncharacterized protein OS=Glycine max PE=2
SV=1
Length = 350
Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 30/34 (88%)
Query: 1 DSYNPVPGVMQGVPASRDYTGGFSSKLMVGGLSL 34
D+YNPVPG+M+GVP+SRDY GGF+SKLM L+L
Sbjct: 265 DAYNPVPGLMEGVPSSRDYNGGFASKLMAKDLNL 298
>D7TKK7_VITVI (tr|D7TKK7) Whole genome shotgun sequence of line PN40024,
scaffold_3.assembly12x (Fragment) OS=Vitis vinifera
GN=VIT_00021668001 PE=4 SV=1
Length = 345
Score = 57.0 bits (136), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 30/34 (88%)
Query: 1 DSYNPVPGVMQGVPASRDYTGGFSSKLMVGGLSL 34
DSYNPVPGVM+GVP+SR+Y GGF++KLM L+L
Sbjct: 263 DSYNPVPGVMEGVPSSRNYVGGFATKLMAKDLNL 296
>A5BDW0_VITVI (tr|A5BDW0) Putative uncharacterized protein (Fragment) OS=Vitis
vinifera GN=VITISV_003240 PE=4 SV=1
Length = 1561
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/29 (75%), Positives = 28/29 (96%)
Query: 1 DSYNPVPGVMQGVPASRDYTGGFSSKLMV 29
DSYNPVPGVM+GVP+SR+Y GGF++KLM+
Sbjct: 1455 DSYNPVPGVMEGVPSSRNYVGGFATKLMI 1483
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/33 (69%), Positives = 30/33 (90%)
Query: 1 DSYNPVPGVMQGVPASRDYTGGFSSKLMVGGLS 33
DSYNPVPGVM+GVP+SR+Y GGF++KLM G++
Sbjct: 1371 DSYNPVPGVMEGVPSSRNYVGGFATKLMSLGIA 1403
>A9RSI5_PHYPA (tr|A9RSI5) Predicted protein OS=Physcomitrella patens subsp.
patens GN=PHYPADRAFT_205200 PE=4 SV=1
Length = 352
Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 27/34 (79%)
Query: 1 DSYNPVPGVMQGVPASRDYTGGFSSKLMVGGLSL 34
D+YNPVPGVM VPASRDY GGFSS+L+ L L
Sbjct: 266 DTYNPVPGVMANVPASRDYKGGFSSQLLTKDLGL 299