Jatropha Genome Database

JcCB0826111.10
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0826111.10 + phase: 0 /partial/short
         (47 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9S1I0_RICCO (tr|B9S1I0) Glycine cleavage system h protein, puta...    59   2e-07
A5BA00_VITVI (tr|A5BA00) Putative uncharacterized protein OS=Vit...    54   5e-06
D7TTY4_VITVI (tr|D7TTY4) Whole genome shotgun sequence of line P...    54   6e-06

>B9S1I0_RICCO (tr|B9S1I0) Glycine cleavage system h protein, putative
          OS=Ricinus communis GN=RCOM_0865200 PE=3 SV=1
          Length = 165

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/36 (86%), Positives = 31/36 (86%), Gaps = 1/36 (2%)

Query: 1  MALRMWASSTANALKISVASKPQLSP-YCLSRCFSS 35
          MALRMWASSTAN LKISVA K QLSP Y LSRCFSS
Sbjct: 1  MALRMWASSTANTLKISVACKAQLSPSYSLSRCFSS 36


>A5BA00_VITVI (tr|A5BA00) Putative uncharacterized protein OS=Vitis vinifera
          GN=VITISV_038357 PE=3 SV=1
          Length = 165

 Score = 53.9 bits (128), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/36 (75%), Positives = 31/36 (86%), Gaps = 1/36 (2%)

Query: 1  MALRMWASSTANALKISVASKPQLSP-YCLSRCFSS 35
          MALRMWASSTANAL++S ASK  +SP + LSRCFSS
Sbjct: 1  MALRMWASSTANALRVSCASKAHVSPAFSLSRCFSS 36


>D7TTY4_VITVI (tr|D7TTY4) Whole genome shotgun sequence of line PN40024,
          scaffold_12.assembly12x (Fragment) OS=Vitis vinifera
          GN=VIT_00013175001 PE=4 SV=1
          Length = 165

 Score = 53.9 bits (128), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 27/36 (75%), Positives = 31/36 (86%), Gaps = 1/36 (2%)

Query: 1  MALRMWASSTANALKISVASKPQLSP-YCLSRCFSS 35
          MALRMWASSTANAL++S ASK  +SP + LSRCFSS
Sbjct: 1  MALRMWASSTANALRVSCASKAHVSPAFSLSRCFSS 36