Jatropha Genome Database

JcCB0693201.20
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0693201.20 - phase: 1 /pseudo/partial
         (89 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9IQ02_POPTR (tr|B9IQ02) Predicted protein OS=Populus trichocarp...    74   4e-12
D7SPU0_VITVI (tr|D7SPU0) Whole genome shotgun sequence of line P...    70   1e-10
A2Q1P9_MEDTR (tr|A2Q1P9) Putative uncharacterized protein OS=Med...    68   4e-10
A5AWB9_VITVI (tr|A5AWB9) Putative uncharacterized protein OS=Vit...    68   4e-10
Q9M0C1_ARATH (tr|Q9M0C1) At4g30390 OS=Arabidopsis thaliana GN=At...    65   3e-09
D7MBW6_ARALY (tr|D7MBW6) Putative uncharacterized protein OS=Ara...    64   4e-09
A9THB7_PHYPA (tr|A9THB7) Predicted protein OS=Physcomitrella pat...    57   5e-07
C5Y9L5_SORBI (tr|C5Y9L5) Putative uncharacterized protein Sb06g0...    57   7e-07

>B9IQ02_POPTR (tr|B9IQ02) Predicted protein OS=Populus trichocarpa
          GN=POPTRDRAFT_809582 PE=4 SV=1
          Length = 88

 Score = 74.3 bits (181), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 35/43 (81%), Positives = 40/43 (93%)

Query: 43 RTLKAGKLNEKVLKLFMATGKDEVLSVIEALNIQYVLTPVLPT 85
          RTLKAGKL EKVLKLF+ATG DEVL+ I+ALNIQ+V+TPVLPT
Sbjct: 40 RTLKAGKLTEKVLKLFVATGNDEVLAFIQALNIQHVITPVLPT 82


>D7SPU0_VITVI (tr|D7SPU0) Whole genome shotgun sequence of line PN40024,
          scaffold_23.assembly12x (Fragment) OS=Vitis vinifera
          GN=VIT_00019150001 PE=4 SV=1
          Length = 86

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/69 (57%), Positives = 49/69 (71%), Gaps = 5/69 (7%)

Query: 17 FNLLNFSVLFGLAIYLCSNADFHVLXRTLKAGKLNEKVLKLFMATGKDEVLSVIEALNIQ 76
           NL NFS L  L  ++       +  RTLKAGKL EK+L LFMATGKDEVL++I++LNIQ
Sbjct: 17 LNLSNFSDLSPLPDHIL----LDLFLRTLKAGKLTEKILMLFMATGKDEVLALIQSLNIQ 72

Query: 77 YVLTPVLPT 85
           + TPVLPT
Sbjct: 73 LI-TPVLPT 80


>A2Q1P9_MEDTR (tr|A2Q1P9) Putative uncharacterized protein OS=Medicago
          truncatula GN=MtrDRAFT_AC148994g36v2 PE=4 SV=1
          Length = 87

 Score = 67.8 bits (164), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 40/43 (93%)

Query: 43 RTLKAGKLNEKVLKLFMATGKDEVLSVIEALNIQYVLTPVLPT 85
          R LKAGKL EKVLKLF+ATG +EV+S+++ALNI++++TPVLPT
Sbjct: 39 RILKAGKLTEKVLKLFIATGNEEVISLVQALNIRHIVTPVLPT 81


>A5AWB9_VITVI (tr|A5AWB9) Putative uncharacterized protein OS=Vitis vinifera
           GN=VITISV_031831 PE=4 SV=1
          Length = 513

 Score = 67.8 bits (164), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/46 (71%), Positives = 40/46 (86%), Gaps = 1/46 (2%)

Query: 43  RTLKAGKLNEKVLKLFMATGKDEVLSVIEALNIQYVLTPVLPTSEL 88
           RTLKAGKL EK+L LFMATGKDEVL++I++LNIQ ++ PVLPT  L
Sbjct: 116 RTLKAGKLTEKILMLFMATGKDEVLALIQSLNIQ-LINPVLPTISL 160


>Q9M0C1_ARATH (tr|Q9M0C1) At4g30390 OS=Arabidopsis thaliana GN=At4g30390 PE=4
          SV=1
          Length = 95

 Score = 64.7 bits (156), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/43 (67%), Positives = 39/43 (90%)

Query: 43 RTLKAGKLNEKVLKLFMATGKDEVLSVIEALNIQYVLTPVLPT 85
          RTL+AGKLNE+VL+LFMA+G +EVLSVI+AL I+  ++P+LPT
Sbjct: 40 RTLEAGKLNERVLRLFMASGNEEVLSVIDALKIKINVSPILPT 82


>D7MBW6_ARALY (tr|D7MBW6) Putative uncharacterized protein OS=Arabidopsis
          lyrata subsp. lyrata GN=ARALYDRAFT_491714 PE=4 SV=1
          Length = 95

 Score = 64.3 bits (155), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 38/43 (88%)

Query: 43 RTLKAGKLNEKVLKLFMATGKDEVLSVIEALNIQYVLTPVLPT 85
          RTLKAGKLNE+VL+LFMA+G +EVLSVI+AL I+  + P+LPT
Sbjct: 40 RTLKAGKLNERVLRLFMASGNEEVLSVIDALKIKINVYPILPT 82


>A9THB7_PHYPA (tr|A9THB7) Predicted protein OS=Physcomitrella patens subsp.
          patens GN=PHYPADRAFT_92771 PE=4 SV=1
          Length = 88

 Score = 57.4 bits (137), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 44/68 (64%), Gaps = 4/68 (5%)

Query: 18 NLLNFSVLFGLAIYLCSNADFHVLXRTLKAGKLNEKVLKLFMATGKDEVLSVIEALNIQY 77
          ++  FS L  +  YL     + +  +TL AGKLN+ VL++F+ TG DEV  ++EAL I+ 
Sbjct: 18 HIHRFSDLSSVPDYLV----YELFQKTLAAGKLNDHVLRMFLGTGNDEVFQLVEALKIRP 73

Query: 78 VLTPVLPT 85
          V+ P+LPT
Sbjct: 74 VIKPILPT 81


>C5Y9L5_SORBI (tr|C5Y9L5) Putative uncharacterized protein Sb06g031580
          OS=Sorghum bicolor GN=Sb06g031580 PE=4 SV=1
          Length = 86

 Score = 57.0 bits (136), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 43 RTLKAGKLNEKVLKLFMATGKDEVLSVIEALNIQYVLTPVLPT 85
          RTL AGKL EKVLKLF+ATG +E++  ++ LNI+  L PVLPT
Sbjct: 38 RTLSAGKLTEKVLKLFLATGCEEIILAVQLLNIKQPLVPVLPT 80