Jatropha Genome Database

JcCB0646291.10
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0646291.10 - phase: 0 /pseudo/partial
         (94 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9R9J1_RICCO (tr|B9R9J1) Mads box protein, putative OS=Ricinus c...    67   5e-10
A7LLT6_CITSI (tr|A7LLT6) SOC1-like protein 2 OS=Citrus sinensis ...    56   1e-06

>B9R9J1_RICCO (tr|B9R9J1) Mads box protein, putative OS=Ricinus communis
           GN=RCOM_1497850 PE=3 SV=1
          Length = 213

 Score = 67.4 bits (163), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 33/53 (62%), Positives = 38/53 (71%), Gaps = 1/53 (1%)

Query: 42  LLEENASLREKCGEKKWPNPIEQKQAVKDLNLSD-KNSEVDTELFIGLPEMHC 93
           LLEEN  LREKC E  W +P ++K+    LN S  K SEV+TELFIGLPEMHC
Sbjct: 161 LLEENIRLREKCAENHWQHPTQRKEIKTYLNSSSKKKSEVETELFIGLPEMHC 213


>A7LLT6_CITSI (tr|A7LLT6) SOC1-like protein 2 OS=Citrus sinensis PE=2 SV=1
          Length = 212

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 39/53 (73%)

Query: 42  LLEENASLREKCGEKKWPNPIEQKQAVKDLNLSDKNSEVDTELFIGLPEMHCS 94
           LLE+NA L  KCG+K W    ++K+AV + + S ++S+++TELFIGLPEM  +
Sbjct: 160 LLEDNARLCIKCGQKPWQQSTQRKEAVNNCSQSGQSSDIETELFIGLPEMRAA 212