Jatropha Genome Database

JcCB0597261.20
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0597261.20 + phase: 0 /partial
         (82 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9SEV1_RICCO (tr|B9SEV1) Rab3 gtpase-activating protein non-cata...   158   2e-37
D7L385_ARALY (tr|D7L385) Putative uncharacterized protein OS=Ara...   127   5e-28
Q9LKB3_ARATH (tr|Q9LKB3) At3g14910 OS=Arabidopsis thaliana GN=At...   125   2e-27

>B9SEV1_RICCO (tr|B9SEV1) Rab3 gtpase-activating protein non-catalytic subunit,
          putative OS=Ricinus communis GN=RCOM_0105730 PE=4 SV=1
          Length = 484

 Score =  158 bits (399), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 75/82 (91%), Positives = 80/82 (97%)

Query: 1  MSSKRNHTTELGCIACEELSDVGAGKEGWLVDNPSLLCALDTHSIALANRSLILITGWDD 60
          MSSKR+HTTELGCIACEELSDVGAGKEGWLVDNP+L CALDTHSIA++NR LILITGWDD
Sbjct: 1  MSSKRSHTTELGCIACEELSDVGAGKEGWLVDNPNLKCALDTHSIAISNRYLILITGWDD 60

Query: 61 GPRLKIRPNLSPIESESITALE 82
          GPRLKIRP+LSPIESESITALE
Sbjct: 61 GPRLKIRPDLSPIESESITALE 82


>D7L385_ARALY (tr|D7L385) Putative uncharacterized protein OS=Arabidopsis
          lyrata subsp. lyrata GN=ARALYDRAFT_478912 PE=4 SV=1
          Length = 455

 Score =  127 bits (318), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 62/82 (75%), Positives = 72/82 (87%), Gaps = 2/82 (2%)

Query: 3  SKRNHTTELGCIACEELSDVGAGKEGWLVDNPSLLCALDTHSIALANRSLILITGWD--D 60
          +KR H TELGCIACEELS++GAGKEGWLV+NP+LL ALD+HS+ALANR LILI  W   D
Sbjct: 2  AKRIHLTELGCIACEELSELGAGKEGWLVNNPNLLSALDSHSLALANRFLILIVNWGDPD 61

Query: 61 GPRLKIRPNLSPIESESITALE 82
           PRLKIRP+LSPIE+ESITA+E
Sbjct: 62 APRLKIRPDLSPIEAESITAIE 83


>Q9LKB3_ARATH (tr|Q9LKB3) At3g14910 OS=Arabidopsis thaliana GN=At3g14910 PE=2
          SV=1
          Length = 455

 Score =  125 bits (313), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 60/82 (73%), Positives = 72/82 (87%), Gaps = 2/82 (2%)

Query: 3  SKRNHTTELGCIACEELSDVGAGKEGWLVDNPSLLCALDTHSIALANRSLILITGWD--D 60
          +KR H TELGCIACEEL+++GAGKEGWLV+NP+LL ALD+HS+ALANR LILI  W   D
Sbjct: 2  AKRIHLTELGCIACEELTELGAGKEGWLVNNPNLLSALDSHSLALANRFLILIVNWGDPD 61

Query: 61 GPRLKIRPNLSPIESESITALE 82
           PR+KIRP+LSPIE+ESITA+E
Sbjct: 62 APRVKIRPDLSPIEAESITAIE 83