Jatropha Genome Database

JcCB0569231.10
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0569231.10 - phase: 0 /partial/short
         (42 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9SEL3_RICCO (tr|B9SEL3) Transcription initiation factor ia, put...    70   8e-11
B9H643_POPTR (tr|B9H643) Predicted protein OS=Populus trichocarp...    63   1e-08
D7U4A9_VITVI (tr|D7U4A9) Whole genome shotgun sequence of line P...    61   4e-08
Q8L643_ARATH (tr|Q8L643) Putative uncharacterized protein At2g34...    57   5e-07
Q0WLX6_ARATH (tr|Q0WLX6) Putative uncharacterized protein At2g34...    57   7e-07
D7LH42_ARALY (tr|D7LH42) RNA polymerase I specific transcription...    56   1e-06
Q1PEV9_ARATH (tr|Q1PEV9) RNA polymerase I specific transcription...    56   1e-06
Q653F3_ORYSJ (tr|Q653F3) Os06g0688100 protein OS=Oryza sativa su...    55   3e-06
B8B1T2_ORYSI (tr|B8B1T2) Putative uncharacterized protein OS=Ory...    54   4e-06
D7KFL7_ARALY (tr|D7KFL7) Predicted protein OS=Arabidopsis lyrata...    54   8e-06
Q9SA74_ARATH (tr|Q9SA74) T5I8.4 protein OS=Arabidopsis thaliana ...    53   9e-06

>B9SEL3_RICCO (tr|B9SEL3) Transcription initiation factor ia, putative OS=Ricinus
           communis GN=RCOM_0970060 PE=4 SV=1
          Length = 640

 Score = 70.1 bits (170), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 31/42 (73%), Positives = 37/42 (88%), Gaps = 1/42 (2%)

Query: 1   FVLFYACSLDPENCGLKFARTLADRFVYGDNPLTSRMSSVAY 42
           FV+FYAC+LDPENCG++FA  L DRF YG+NPLT RMS+VAY
Sbjct: 349 FVMFYACALDPENCGVEFAERLRDRFTYGENPLT-RMSAVAY 389


>B9H643_POPTR (tr|B9H643) Predicted protein OS=Populus trichocarpa
           GN=POPTRDRAFT_1077727 PE=4 SV=1
          Length = 635

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 34/42 (80%)

Query: 1   FVLFYACSLDPENCGLKFARTLADRFVYGDNPLTSRMSSVAY 42
           F +FYAC+LDPENCG+KFA+TL D F+   NP  +RMS+VAY
Sbjct: 345 FTIFYACALDPENCGVKFAQTLVDLFISTCNPPVTRMSAVAY 386


>D7U4A9_VITVI (tr|D7U4A9) Whole genome shotgun sequence of line PN40024,
           scaffold_44.assembly12x (Fragment) OS=Vitis vinifera
           GN=VIT_00026448001 PE=4 SV=1
          Length = 607

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/42 (66%), Positives = 34/42 (80%)

Query: 1   FVLFYACSLDPENCGLKFARTLADRFVYGDNPLTSRMSSVAY 42
           FV+FYAC+LDPENCG++FAR LAD FV    P  +RMS+VAY
Sbjct: 334 FVMFYACALDPENCGVRFARVLADFFVCSTFPPLNRMSAVAY 375


>Q8L643_ARATH (tr|Q8L643) Putative uncharacterized protein At2g34750
           OS=Arabidopsis thaliana GN=At2g34750 PE=2 SV=1
          Length = 613

 Score = 57.4 bits (137), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 24/42 (57%), Positives = 33/42 (78%)

Query: 1   FVLFYACSLDPENCGLKFARTLADRFVYGDNPLTSRMSSVAY 42
           F++FYACSLDPENCG+KFA  L + F+  +  + +RMS+VAY
Sbjct: 338 FLIFYACSLDPENCGVKFASKLVEIFLSSNKHVATRMSAVAY 379


>Q0WLX6_ARATH (tr|Q0WLX6) Putative uncharacterized protein At2g34760 (Fragment)
           OS=Arabidopsis thaliana GN=At2g34760 PE=2 SV=1
          Length = 410

 Score = 57.0 bits (136), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 24/42 (57%), Positives = 33/42 (78%)

Query: 1   FVLFYACSLDPENCGLKFARTLADRFVYGDNPLTSRMSSVAY 42
           F++FYACSLDPENCG+KFA  L + F+  +  + +RMS+VAY
Sbjct: 135 FLIFYACSLDPENCGVKFASKLVEIFLSSNKHVATRMSAVAY 176


>D7LH42_ARALY (tr|D7LH42) RNA polymerase I specific transcription initiation
           factor RRN3 family protein OS=Arabidopsis lyrata subsp.
           lyrata GN=ARALYDRAFT_482439 PE=4 SV=1
          Length = 614

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/42 (57%), Positives = 33/42 (78%)

Query: 1   FVLFYACSLDPENCGLKFARTLADRFVYGDNPLTSRMSSVAY 42
           F++FYACSLDPENCG+KFA  L + F+  +   ++RMS+VAY
Sbjct: 337 FLMFYACSLDPENCGVKFASKLVEIFLSSNKHPSTRMSAVAY 378


>Q1PEV9_ARATH (tr|Q1PEV9) RNA polymerase I specific transcription initiation
           factor RRN3 family protein OS=Arabidopsis thaliana
           GN=At2g39240 PE=2 SV=1
          Length = 573

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/42 (52%), Positives = 32/42 (76%)

Query: 1   FVLFYACSLDPENCGLKFARTLADRFVYGDNPLTSRMSSVAY 42
           F++FYACSLDPENCG+KFA  L ++F+  +N   +R ++V Y
Sbjct: 310 FLMFYACSLDPENCGVKFASKLLEKFLSSNNNQVTRTNAVTY 351


>Q653F3_ORYSJ (tr|Q653F3) Os06g0688100 protein OS=Oryza sativa subsp. japonica
           GN=P0623A10.34-1 PE=2 SV=1
          Length = 622

 Score = 54.7 bits (130), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/42 (57%), Positives = 32/42 (76%)

Query: 1   FVLFYACSLDPENCGLKFARTLADRFVYGDNPLTSRMSSVAY 42
           F++FYACSLDPE CGL+FA  L+D F+  +    SRMS+V+Y
Sbjct: 330 FIMFYACSLDPEICGLEFALFLSDIFIKKEEDSISRMSAVSY 371


>B8B1T2_ORYSI (tr|B8B1T2) Putative uncharacterized protein OS=Oryza sativa subsp.
           indica GN=OsI_24246 PE=4 SV=1
          Length = 622

 Score = 54.3 bits (129), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/42 (57%), Positives = 32/42 (76%)

Query: 1   FVLFYACSLDPENCGLKFARTLADRFVYGDNPLTSRMSSVAY 42
           F++FYACSLDPE CGL+FA  L+D F+  +    SRMS+V+Y
Sbjct: 330 FIMFYACSLDPEICGLEFALFLSDIFIKKEEDSISRMSAVSY 371


>D7KFL7_ARALY (tr|D7KFL7) Predicted protein OS=Arabidopsis lyrata subsp. lyrata
           GN=ARALYDRAFT_680816 PE=4 SV=1
          Length = 610

 Score = 53.5 bits (127), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/42 (54%), Positives = 32/42 (76%)

Query: 1   FVLFYACSLDPENCGLKFARTLADRFVYGDNPLTSRMSSVAY 42
           F++FYACSLDPE CG++FA  L D ++  + P  +RMS+VAY
Sbjct: 331 FLMFYACSLDPEYCGVRFASKLLDIYLSRNKPRLTRMSAVAY 372


>Q9SA74_ARATH (tr|Q9SA74) T5I8.4 protein OS=Arabidopsis thaliana GN=At1g30590
           PE=4 SV=1
          Length = 622

 Score = 53.1 bits (126), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 23/42 (54%), Positives = 32/42 (76%)

Query: 1   FVLFYACSLDPENCGLKFARTLADRFVYGDNPLTSRMSSVAY 42
           F++FYACSLDPENCG++FA  L D ++  +    +RMS+VAY
Sbjct: 343 FLMFYACSLDPENCGVRFASKLLDIYLSSNTCRLTRMSAVAY 384