Jatropha Genome Database

JcCB0534371.10
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0534371.10 - phase: 0 
         (64 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9N9Y7_POPTR (tr|B9N9Y7) Nramp transporter OS=Populus trichocarp...    72   2e-11
A5BBH7_VITVI (tr|A5BBH7) Putative uncharacterized protein OS=Vit...    56   2e-06

>B9N9Y7_POPTR (tr|B9N9Y7) Nramp transporter OS=Populus trichocarpa
          GN=POPTRDRAFT_787385 PE=4 SV=1
          Length = 541

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/46 (78%), Positives = 37/46 (80%)

Query: 1  MAGSQSVQPQFIASTGNGSFSNAPLIENSDVDQIIVPDVTSLTFYF 46
          MAGS SVQPQFIASTGN SFSNAPLIENSD +QIIVPD  S    F
Sbjct: 1  MAGSSSVQPQFIASTGNRSFSNAPLIENSDPEQIIVPDRKSWKNLF 46


>A5BBH7_VITVI (tr|A5BBH7) Putative uncharacterized protein OS=Vitis vinifera
          GN=VITISV_034005 PE=4 SV=1
          Length = 595

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/39 (69%), Positives = 29/39 (74%)

Query: 3  GSQSVQPQFIASTGNGSFSNAPLIENSDVDQIIVPDVTS 41
           S  VQPQFIASTGN S SNA LIEN + DQI+VPD  S
Sbjct: 2  ASTPVQPQFIASTGNRSLSNAXLIENPESDQIVVPDRKS 40