Jatropha Genome Database

JcCB0499871.20
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0499871.20 + phase: 2 /TE/partial
         (119 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q2HVM1_MEDTR (tr|Q2HVM1) RNA-directed DNA polymerase (Reverse tr...    87   5e-16
C0L2W0_ARAHY (tr|C0L2W0) Putative reverse transcriptase OS=Arach...    79   1e-13
Q1AKH8_SOYBN (tr|Q1AKH8) Reverse transcriptase family member OS=...    74   4e-12
C6Y4D5_9NEOP (tr|C6Y4D5) Endonuclease-reverse transcriptase HmRT...    72   2e-11
A2Q4S9_MEDTR (tr|A2Q4S9) RNA-directed DNA polymerase (Reverse tr...    64   7e-09
D7F169_BOMMO (tr|D7F169) Endonuclease-reverse transcriptase OS=B...    61   5e-08
D7F171_BOMMO (tr|D7F171) Endonuclease-reverse transcriptase OS=B...    57   6e-07

>Q2HVM1_MEDTR (tr|Q2HVM1) RNA-directed DNA polymerase (Reverse transcriptase)
           OS=Medicago truncatula GN=MtrDRAFT_AC148816g39v2 PE=4
           SV=2
          Length = 517

 Score = 87.0 bits (214), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 54/112 (48%), Positives = 70/112 (62%), Gaps = 3/112 (2%)

Query: 1   KRVIEHRHR-VTKVLENQFGFTLGGFTTEAIFLLRRQVKIYREKKKDLHIVFTDLEKVYD 59
           +RVI+ R R  T V +NQFGF LG  T EAI+LL+R ++ YR  KKDLH+VF DLEK YD
Sbjct: 233 ERVIKRRLRKETLVTDNQFGFMLGRSTMEAIYLLQRVMERYRTDKKDLHLVFFDLEKGYD 292

Query: 60  MVPRKVLW*DLEKRGSCQLY*MQLKDMYDNTVTTQV*EHLDRIQRSFP*MLG 111
            VPR++LW  LEK+     Y   +KDMY+   T+   +  D     FP  +G
Sbjct: 293 RVPREILWKALEKKRVRIAYIRAIKDMYERASTSV--KTQDGTTEDFPITIG 342


>C0L2W0_ARAHY (tr|C0L2W0) Putative reverse transcriptase OS=Arachis hypogaea PE=4
           SV=1
          Length = 149

 Score = 79.3 bits (194), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/83 (54%), Positives = 54/83 (65%), Gaps = 3/83 (3%)

Query: 12  KVLENQFGF-TLGGFTTEAIFLLRRQVKIYREKKKDLHIVFTDLEKVYDMVPRKVLW*DL 70
           K L    GF TL   TTEAI+LLRR ++ YR  K+DLH+VF DLEK YD VPR+VLW  L
Sbjct: 32  KTLTTTEGFKTLS--TTEAIYLLRRMMERYRSNKRDLHMVFIDLEKAYDRVPREVLWKVL 89

Query: 71  EKRGSCQLY*MQLKDMYDNTVTT 93
           EK+     Y   +KDMYD   T+
Sbjct: 90  EKKTVRIAYSCAIKDMYDGATTS 112


>Q1AKH8_SOYBN (tr|Q1AKH8) Reverse transcriptase family member OS=Glycine max
          PE=4 SV=1
          Length = 377

 Score = 74.3 bits (181), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 36/71 (50%), Positives = 49/71 (69%)

Query: 23 GGFTTEAIFLLRRQVKIYREKKKDLHIVFTDLEKVYDMVPRKVLW*DLEKRGSCQLY*MQ 82
          G  T EAI+LLRR ++ YR  ++DLH++F DLEK YD VPR++LW  LEK+G    Y   
Sbjct: 3  GRSTMEAIYLLRRVMEQYRMAQQDLHLIFIDLEKAYDRVPREILWKALEKKGVRVAYIRA 62

Query: 83 LKDMYDNTVTT 93
          ++DMYD   T+
Sbjct: 63 IQDMYDRVSTS 73


>C6Y4D5_9NEOP (tr|C6Y4D5) Endonuclease-reverse transcriptase HmRTE-e01
           OS=Heliconius melpomene GN=HM01045 PE=4 SV=1
          Length = 990

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/93 (38%), Positives = 58/93 (62%), Gaps = 1/93 (1%)

Query: 1   KRVIEHR-HRVTKVLENQFGFTLGGFTTEAIFLLRRQVKIYREKKKDLHIVFTDLEKVYD 59
           +R+I+ R  R   V E+Q+GF  G  T +AIF LR  ++ YREK++ LH+ F DL+K +D
Sbjct: 594 ERMIDLRLRRECTVSESQYGFQPGSGTMDAIFALRTLMEAYREKRRALHVAFLDLQKAFD 653

Query: 60  MVPRKVLW*DLEKRGSCQLY*MQLKDMYDNTVT 92
            VPR+ +W  L  +G  + Y   ++ MY ++ +
Sbjct: 654 CVPRQCIWWALRSKGIPEAYIEIIRGMYHDSAS 686


>A2Q4S9_MEDTR (tr|A2Q4S9) RNA-directed DNA polymerase (Reverse transcriptase)
           OS=Medicago truncatula GN=MtrDRAFT_AC157890g32v2 PE=4
           SV=1
          Length = 243

 Score = 63.5 bits (153), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 32/62 (51%), Positives = 42/62 (67%)

Query: 32  LLRRQVKIYREKKKDLHIVFTDLEKVYDMVPRKVLW*DLEKRGSCQLY*MQLKDMYDNTV 91
           LLRR ++ YR  KKDLH+VF DLEK YD VPR++LW  L+K+G    Y   ++DMY+   
Sbjct: 116 LLRRVMERYRTDKKDLHLVFIDLEKAYDRVPREILWKALKKKGVRIAYIKAIQDMYEGAS 175

Query: 92  TT 93
           T 
Sbjct: 176 TC 177


>D7F169_BOMMO (tr|D7F169) Endonuclease-reverse transcriptase OS=Bombyx mori PE=4
           SV=1
          Length = 996

 Score = 60.8 bits (146), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 1/88 (1%)

Query: 1   KRVIEHRHRVTKVL-ENQFGFTLGGFTTEAIFLLRRQVKIYREKKKDLHIVFTDLEKVYD 59
           +RVI+ R R    L +N +GF  G  TT+ +F L    + YREK + L++ F D+EK +D
Sbjct: 596 ERVIDSRLRSECSLSKNHYGFVQGLSTTDPMFALNTIAEEYREKLRPLYVAFLDMEKAFD 655

Query: 60  MVPRKVLW*DLEKRGSCQLY*MQLKDMY 87
            VPR  +W  L K+   + Y   + DMY
Sbjct: 656 RVPRDTIWWSLRKKNVPEHYVNVIIDMY 683


>D7F171_BOMMO (tr|D7F171) Endonuclease-reverse transcriptase OS=Bombyx mori PE=4
           SV=1
          Length = 1061

 Score = 57.0 bits (136), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 45/75 (60%)

Query: 15  ENQFGFTLGGFTTEAIFLLRRQVKIYREKKKDLHIVFTDLEKVYDMVPRKVLW*DLEKRG 74
           E QFGF     T EAIF +R+  +  RE+ + L++ F DLEK +D VPR+ LW  L K G
Sbjct: 585 ETQFGFRPDRGTCEAIFSVRQLQEKSREQGRQLYLCFVDLEKAFDSVPREALWLVLRKLG 644

Query: 75  SCQLY*MQLKDMYDN 89
             + +   L+ ++D+
Sbjct: 645 CTEKFVALLRLLHDD 659