Jatropha Genome Database
- JcCB0477071.10
BLASTP 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0477071.10 + phase: 1 /partial
(231 letters)
Database: trembl
11,636,205 sequences; 3,746,823,912 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
B9IL57_POPTR (tr|B9IL57) DNA-directed RNA polymerase OS=Populus ... 325 2e-87
B9RNV9_RICCO (tr|B9RNV9) DNA-directed RNA polymerase OS=Ricinus ... 325 3e-87
D7SV38_VITVI (tr|D7SV38) Whole genome shotgun sequence of line P... 306 8e-82
Q1L6V6_SOLLC (tr|Q1L6V6) DNA-directed RNA polymerase (Fragment) ... 281 4e-74
Q1L6W5_RHOMC (tr|Q1L6W5) DNA-directed RNA polymerase (Fragment) ... 276 1e-72
Q17U53_SOLBU (tr|Q17U53) DNA-directed RNA polymerase, putative O... 263 1e-68
Q1L6W3_ANTMA (tr|Q1L6W3) DNA-directed RNA polymerase (Fragment) ... 257 9e-67
D7L7Z5_ARALY (tr|D7L7Z5) NRPD2a OS=Arabidopsis lyrata subsp. lyr... 255 3e-66
Q9LV32_ARATH (tr|Q9LV32) DNA-directed RNA polymerase OS=Arabidop... 249 1e-64
Q9LK40_ARATH (tr|Q9LK40) DNA-directed RNA polymerase OS=Arabidop... 247 6e-64
C5WRS0_SORBI (tr|C5WRS0) DNA-directed RNA polymerase OS=Sorghum ... 228 6e-58
C5Y8Y9_SORBI (tr|C5Y8Y9) DNA-directed RNA polymerase OS=Sorghum ... 227 8e-58
Q67ZK6_ARATH (tr|Q67ZK6) DNA-directed RNA polymerase OS=Arabidop... 226 1e-57
Q0J9N2_ORYSJ (tr|Q0J9N2) DNA-directed RNA polymerase (Fragment) ... 225 3e-57
Q7XTQ7_ORYSJ (tr|Q7XTQ7) DNA-directed RNA polymerase OS=Oryza sa... 225 3e-57
Q07DU9_MAIZE (tr|Q07DU9) DNA-directed RNA polymerase (Fragment) ... 225 3e-57
Q7F9D6_ORYSJ (tr|Q7F9D6) DNA-directed RNA polymerase OS=Oryza sa... 225 3e-57
D2WKH8_MAIZE (tr|D2WKH8) DNA-directed RNA polymerase OS=Zea mays... 225 3e-57
D2WKI1_MAIZE (tr|D2WKI1) DNA-directed RNA polymerase OS=Zea mays... 225 4e-57
D2WKI0_MAIZE (tr|D2WKI0) DNA-directed RNA polymerase OS=Zea mays... 225 4e-57
D2D1U0_9CARY (tr|D2D1U0) DNA-directed RNA polymerase (Fragment) ... 223 1e-56
D2D1U1_9CARY (tr|D2D1U1) DNA-directed RNA polymerase (Fragment) ... 223 1e-56
Q259Y6_ORYSA (tr|Q259Y6) DNA-directed RNA polymerase OS=Oryza sa... 222 3e-56
D2D1S3_9CARY (tr|D2D1S3) DNA-directed RNA polymerase (Fragment) ... 221 4e-56
D2D1U3_9CARY (tr|D2D1U3) DNA-directed RNA polymerase (Fragment) ... 221 4e-56
D2D1S5_9CARY (tr|D2D1S5) DNA-directed RNA polymerase (Fragment) ... 220 7e-56
D2D1S4_9CARY (tr|D2D1S4) DNA-directed RNA polymerase (Fragment) ... 220 1e-55
Q6YYK5_ORYSJ (tr|Q6YYK5) DNA-directed RNA polymerase OS=Oryza sa... 214 4e-54
A3BQ32_ORYSJ (tr|A3BQ32) DNA-directed RNA polymerase OS=Oryza sa... 214 5e-54
D2D1U2_9CARY (tr|D2D1U2) DNA-directed RNA polymerase (Fragment) ... 200 1e-49
A2YRP1_ORYSI (tr|A2YRP1) DNA-directed RNA polymerase OS=Oryza sa... 188 4e-46
C5YHJ3_SORBI (tr|C5YHJ3) DNA-directed RNA polymerase OS=Sorghum ... 188 4e-46
Q1L6W2_GINBI (tr|Q1L6W2) DNA-directed RNA polymerase (Fragment) ... 176 2e-42
B9FCT0_ORYSJ (tr|B9FCT0) DNA-directed RNA polymerase OS=Oryza sa... 155 4e-36
B8AV78_ORYSI (tr|B8AV78) DNA-directed RNA polymerase OS=Oryza sa... 151 4e-35
A9RJY4_PHYPA (tr|A9RJY4) DNA-directed RNA polymerase OS=Physcomi... 138 6e-31
D2D1T0_9CARY (tr|D2D1T0) DNA-directed RNA polymerase (Fragment) ... 130 9e-29
D2D1S9_9CARY (tr|D2D1S9) DNA-directed RNA polymerase (Fragment) ... 130 9e-29
D2D1T1_9CARY (tr|D2D1T1) DNA-directed RNA polymerase (Fragment) ... 130 9e-29
D2D1S8_9CARY (tr|D2D1S8) DNA-directed RNA polymerase (Fragment) ... 125 5e-27
A9TK27_PHYPA (tr|A9TK27) DNA-directed RNA polymerase OS=Physcomi... 125 5e-27
Q1L6V7_9BRYO (tr|Q1L6V7) DNA-directed RNA polymerase (Fragment) ... 113 1e-23
D2D1T7_9CARY (tr|D2D1T7) DNA-directed RNA polymerase (Fragment) ... 111 7e-23
D2D1T8_9CARY (tr|D2D1T8) DNA-directed RNA polymerase (Fragment) ... 111 7e-23
Q98RY5_GUITH (tr|Q98RY5) DNA-directed RNA polymerase OS=Guillard... 108 5e-22
B3S2W9_TRIAD (tr|B3S2W9) DNA-directed RNA polymerase OS=Trichopl... 107 1e-21
C4V8X8_NOSCE (tr|C4V8X8) DNA-directed RNA polymerase OS=Nosema c... 104 7e-21
A8Q7K3_BRUMA (tr|A8Q7K3) DNA-directed RNA polymerase OS=Brugia m... 104 8e-21
Q1L6W4_9TRAC (tr|Q1L6W4) DNA-directed RNA polymerase (Fragment) ... 103 2e-20
Q56NJ1_VERDA (tr|Q56NJ1) DNA-dependent RNA polymerase second lar... 102 4e-20
A7SHD8_NEMVE (tr|A7SHD8) DNA-directed RNA polymerase OS=Nematost... 102 5e-20
C9SGY6_VERA1 (tr|C9SGY6) DNA-directed RNA polymerase OS=Verticil... 101 5e-20
B9QBL7_TOXGO (tr|B9QBL7) DNA-directed RNA polymerase OS=Toxoplas... 101 7e-20
B9PL56_TOXGO (tr|B9PL56) DNA-directed RNA polymerase OS=Toxoplas... 101 7e-20
B6KB61_TOXGO (tr|B6KB61) DNA-directed RNA polymerase OS=Toxoplas... 101 7e-20
Q6Q268_ESCCA (tr|Q6Q268) DNA-directed RNA polymerase (Fragment) ... 100 1e-19
A4RQU3_OSTLU (tr|A4RQU3) DNA-directed RNA polymerase OS=Ostreoco... 100 1e-19
B4K015_DROGR (tr|B4K015) DNA-directed RNA polymerase OS=Drosophi... 100 1e-19
B4R0H5_DROSI (tr|B4R0H5) DNA-directed RNA polymerase OS=Drosophi... 100 1e-19
B3LYR3_DROAN (tr|B3LYR3) DNA-directed RNA polymerase OS=Drosophi... 100 1e-19
B4N9I3_DROWI (tr|B4N9I3) DNA-directed RNA polymerase OS=Drosophi... 100 1e-19
B4M040_DROVI (tr|B4M040) DNA-directed RNA polymerase OS=Drosophi... 100 1e-19
Q298X6_DROPS (tr|Q298X6) DNA-directed RNA polymerase OS=Drosophi... 100 1e-19
B4G4U0_DROPE (tr|B4G4U0) DNA-directed RNA polymerase OS=Drosophi... 100 1e-19
B4PTC0_DROYA (tr|B4PTC0) DNA-directed RNA polymerase OS=Drosophi... 100 1e-19
B4KDW5_DROMO (tr|B4KDW5) DNA-directed RNA polymerase OS=Drosophi... 100 1e-19
B4HF52_DROSE (tr|B4HF52) DNA-directed RNA polymerase OS=Drosophi... 100 1e-19
B3P0M0_DROER (tr|B3P0M0) DNA-directed RNA polymerase OS=Drosophi... 100 2e-19
C3Y5U9_BRAFL (tr|C3Y5U9) DNA-directed RNA polymerase OS=Branchio... 99 2e-19
Q1KLM3_9APHY (tr|Q1KLM3) DNA-directed RNA polymerase (Fragment) ... 99 3e-19
D7FHZ3_ECTSI (tr|D7FHZ3) Putative uncharacterized protein OS=Ect... 99 5e-19
D0NLW9_PHYIN (tr|D0NLW9) DNA-directed RNA polymerase OS=Phytopht... 99 5e-19
Q01GR3_OSTTA (tr|Q01GR3) DNA-directed RNA polymerase OS=Ostreoco... 98 6e-19
Q27548_CRAGI (tr|Q27548) DNA-directed RNA polymerase (Fragment) ... 98 6e-19
Q2I5S7_UMBRA (tr|Q2I5S7) DNA-directed RNA polymerase (Fragment) ... 98 7e-19
Q207H1_GANTS (tr|Q207H1) DNA-directed RNA polymerase (Fragment) ... 98 7e-19
A7J5A8_9LECA (tr|A7J5A8) DNA-directed RNA polymerase (Fragment) ... 98 8e-19
Q4N2K9_THEPA (tr|Q4N2K9) DNA-directed RNA polymerase OS=Theileri... 98 9e-19
D4NXR7_9AGAR (tr|D4NXR7) RNA polymerase II second largest subuni... 97 9e-19
D4NXR6_COROR (tr|D4NXR6) RNA polymerase II second largest subuni... 97 9e-19
B8C598_THAPS (tr|B8C598) DNA-directed RNA polymerase OS=Thalassi... 97 9e-19
D6WZU5_TRICA (tr|D6WZU5) Putative uncharacterized protein OS=Tri... 97 1e-18
Q4U9X1_THEAN (tr|Q4U9X1) DNA-directed RNA polymerase OS=Theileri... 97 1e-18
Q9UVA3_AGABI (tr|Q9UVA3) DNA-directed RNA polymerase (Fragment) ... 97 2e-18
A1YID1_9FUNG (tr|A1YID1) DNA-directed RNA polymerase (Fragment) ... 97 2e-18
Q1L6W0_9TRAC (tr|Q1L6W0) DNA-directed RNA polymerase (Fragment) ... 97 2e-18
Q207G4_9APHY (tr|Q207G4) DNA-directed RNA polymerase (Fragment) ... 97 2e-18
Q873T2_9AGAR (tr|Q873T2) DNA-directed RNA polymerase (Fragment) ... 97 2e-18
Q1L5A5_9ERIC (tr|Q1L5A5) DNA-directed RNA polymerase (Fragment) ... 97 2e-18
Q5U7W2_9HOMO (tr|Q5U7W2) DNA-directed RNA polymerase (Fragment) ... 97 2e-18
Q2I5U4_9FUNG (tr|Q2I5U4) RNA polymerase II second largest subuni... 96 2e-18
B0WKE9_CULQU (tr|B0WKE9) DNA-directed RNA polymerase OS=Culex qu... 96 2e-18
Q7QAK7_ANOGA (tr|Q7QAK7) DNA-directed RNA polymerase (Fragment) ... 96 2e-18
A9Q153_9AGAR (tr|A9Q153) RNA polymerase II second largest subuni... 96 2e-18
A3QV04_9HYPO (tr|A3QV04) RNA polymerase II second largest subuni... 96 2e-18
A3QRQ8_9HOMO (tr|A3QRQ8) RNA polymerase II second largest subuni... 96 2e-18
B7QNH8_IXOSC (tr|B7QNH8) DNA-directed RNA polymerase OS=Ixodes s... 96 2e-18
Q207G5_9APHY (tr|Q207G5) DNA-directed RNA polymerase (Fragment) ... 96 3e-18
A3QUZ8_9HYPO (tr|A3QUZ8) RNA polymerase II second largest subuni... 96 3e-18
A3QV34_9HYPO (tr|A3QV34) RNA polymerase II second largest subuni... 96 3e-18
A3QV33_9HYPO (tr|A3QV33) RNA polymerase II second largest subuni... 96 3e-18
A3QV14_9HYPO (tr|A3QV14) RNA polymerase II second largest subuni... 96 3e-18
A3QV08_9HYPO (tr|A3QV08) RNA polymerase II second largest subuni... 96 3e-18
A3QV03_9HYPO (tr|A3QV03) RNA polymerase II second largest subuni... 96 3e-18
A3QUZ7_9HYPO (tr|A3QUZ7) RNA polymerase II second largest subuni... 96 3e-18
Q2I5T7_9FUNG (tr|Q2I5T7) DNA-directed RNA polymerase (Fragment) ... 96 3e-18
A3QRQ3_9HOMO (tr|A3QRQ3) RNA polymerase II second largest subuni... 96 3e-18
A9BK63_9CRYP (tr|A9BK63) DNA-directed RNA polymerase OS=Cryptoph... 96 3e-18
D5JBY4_9HOMO (tr|D5JBY4) RNA polymerase II second largest subuni... 96 4e-18
Q06CV3_9AGAR (tr|Q06CV3) RNA polymerase II second largest subuni... 96 4e-18
Q27S75_9AGAR (tr|Q27S75) DNA-directed RNA polymerase (Fragment) ... 96 4e-18
Q1KLL7_9AGAR (tr|Q1KLL7) DNA-directed RNA polymerase (Fragment) ... 96 4e-18
A3QRQ4_9HOMO (tr|A3QRQ4) RNA polymerase II second largest subuni... 96 4e-18
Q873V7_9AGAR (tr|Q873V7) DNA-directed RNA polymerase (Fragment) ... 96 4e-18
Q5S3M6_GRIFR (tr|Q5S3M6) DNA-directed RNA polymerase (Fragment) ... 96 4e-18
Q1L6E5_9MYRT (tr|Q1L6E5) DNA-directed RNA polymerase (Fragment) ... 96 4e-18
D5JC34_9HOMO (tr|D5JC34) RNA polymerase II second largest subuni... 96 4e-18
D5JBY0_9HOMO (tr|D5JBY0) RNA polymerase II second largest subuni... 96 4e-18
D2W225_NAEGR (tr|D2W225) DNA-directed RNA polymerase OS=Naegleri... 95 5e-18
A3QRT0_9HOMO (tr|A3QRT0) RNA polymerase II second largest subuni... 95 5e-18
Q5U7W9_COPCM (tr|Q5U7W9) DNA-directed RNA polymerase (Fragment) ... 95 5e-18
A3QRS4_9HOMO (tr|A3QRS4) RNA polymerase II second largest subuni... 95 5e-18
A3QRQ9_9HOMO (tr|A3QRQ9) RNA polymerase II second largest subuni... 95 6e-18
A3QRR2_9HOMO (tr|A3QRR2) RNA polymerase II second largest subuni... 95 6e-18
D5JC59_9HOMO (tr|D5JC59) RNA polymerase II second largest subuni... 95 6e-18
D5JBX4_9HOMO (tr|D5JBX4) RNA polymerase II second largest subuni... 95 6e-18
D5JBY7_9HOMO (tr|D5JBY7) RNA polymerase II second largest subuni... 95 7e-18
Q1ANE9_9BRYO (tr|Q1ANE9) RNA polymerase II second largest subuni... 95 7e-18
D5JC12_9HOMO (tr|D5JC12) RNA polymerase II second largest subuni... 95 7e-18
D5JC03_9HOMO (tr|D5JC03) RNA polymerase II second largest subuni... 95 7e-18
D5JBZ6_9HOMO (tr|D5JBZ6) RNA polymerase II second largest subuni... 95 7e-18
A3QUZ2_9HYPO (tr|A3QUZ2) RNA polymerase II second largest subuni... 95 7e-18
Q5S3L6_9AGAR (tr|Q5S3L6) DNA-directed RNA polymerase (Fragment) ... 95 7e-18
Q2I5S2_9FUNG (tr|Q2I5S2) DNA-directed RNA polymerase (Fragment) ... 95 7e-18
D5JBX9_9HOMO (tr|D5JBX9) RNA polymerase II second largest subuni... 95 8e-18
D5JBZ1_9HOMO (tr|D5JBZ1) RNA polymerase II second largest subuni... 94 8e-18
Q2HXY8_9AGAR (tr|Q2HXY8) RNA polymerase II second largest subuni... 94 8e-18
D5JBX7_9HOMO (tr|D5JBX7) RNA polymerase II second largest subuni... 94 8e-18
D5JBX6_9HOMO (tr|D5JBX6) RNA polymerase II second largest subuni... 94 8e-18
B4DHJ3_HUMAN (tr|B4DHJ3) DNA-directed RNA polymerase OS=Homo sap... 94 8e-18
C9J2Y9_HUMAN (tr|C9J2Y9) DNA-directed RNA polymerase OS=Homo sap... 94 8e-18
D5JC70_9HOMO (tr|D5JC70) RNA polymerase II second largest subuni... 94 8e-18
D5JC66_9HOMO (tr|D5JC66) RNA polymerase II second largest subuni... 94 8e-18
D5JC60_9HOMO (tr|D5JC60) RNA polymerase II second largest subuni... 94 8e-18
Q1KLA0_9AGAR (tr|Q1KLA0) RNA polymerase II second largest subuni... 94 8e-18
D5JC42_9HOMO (tr|D5JC42) RNA polymerase II second largest subuni... 94 8e-18
D5JC61_9HOMO (tr|D5JC61) RNA polymerase II second largest subuni... 94 8e-18
D5JC50_9HOMO (tr|D5JC50) RNA polymerase II second largest subuni... 94 8e-18
B4DR40_HUMAN (tr|B4DR40) DNA-directed RNA polymerase OS=Homo sap... 94 8e-18
A7XIK9_CORMI (tr|A7XIK9) RNA polymerase II subunit (Fragment) OS... 94 8e-18
D2H8J2_AILME (tr|D2H8J2) DNA-directed RNA polymerase (Fragment) ... 94 9e-18
A5PJW8_BOVIN (tr|A5PJW8) DNA-directed RNA polymerase OS=Bos taur... 94 9e-18
C9J4M6_HUMAN (tr|C9J4M6) DNA-directed RNA polymerase OS=Homo sap... 94 9e-18
B4DH29_HUMAN (tr|B4DH29) DNA-directed RNA polymerase OS=Homo sap... 94 9e-18
D5JC53_9HOMO (tr|D5JC53) RNA polymerase II second largest subuni... 94 9e-18
D5JC39_9HOMO (tr|D5JC39) RNA polymerase II second largest subuni... 94 9e-18
D5JC31_9HOMO (tr|D5JC31) RNA polymerase II second largest subuni... 94 9e-18
D5JC21_9HOMO (tr|D5JC21) RNA polymerase II second largest subuni... 94 9e-18
D5JC19_9HOMO (tr|D5JC19) RNA polymerase II second largest subuni... 94 9e-18
D5JC18_9HOMO (tr|D5JC18) RNA polymerase II second largest subuni... 94 9e-18
D5JC17_9HOMO (tr|D5JC17) RNA polymerase II second largest subuni... 94 9e-18
D5JC16_9HOMO (tr|D5JC16) RNA polymerase II second largest subuni... 94 9e-18
D5JC15_9HOMO (tr|D5JC15) RNA polymerase II second largest subuni... 94 9e-18
D5JC14_9HOMO (tr|D5JC14) RNA polymerase II second largest subuni... 94 9e-18
D5JC13_9HOMO (tr|D5JC13) RNA polymerase II second largest subuni... 94 9e-18
D5JBY3_9HOMO (tr|D5JBY3) RNA polymerase II second largest subuni... 94 9e-18
D5JC45_9HOMO (tr|D5JC45) RNA polymerase II second largest subuni... 94 9e-18
D5JC44_9HOMO (tr|D5JC44) RNA polymerase II second largest subuni... 94 9e-18
A3QV12_9HYPO (tr|A3QV12) RNA polymerase II second largest subuni... 94 1e-17
D5JC11_9HOMO (tr|D5JC11) RNA polymerase II second largest subuni... 94 1e-17
D5JC09_9HOMO (tr|D5JC09) RNA polymerase II second largest subuni... 94 1e-17
A3QRS8_9HOMO (tr|A3QRS8) RNA polymerase II second largest subuni... 94 1e-17
A3QUX1_9HYPO (tr|A3QUX1) RNA polymerase II second largest subuni... 94 1e-17
A3QRQ1_9HOMO (tr|A3QRQ1) RNA polymerase II second largest subuni... 94 1e-17
O48913_GINBI (tr|O48913) DNA-directed RNA polymerase (Fragment) ... 94 1e-17
A9Q161_9AGAR (tr|A9Q161) RNA polymerase II second largest subuni... 94 1e-17
Q2I5T0_9FUNG (tr|Q2I5T0) DNA-directed RNA polymerase (Fragment) ... 94 1e-17
A9Q152_9AGAR (tr|A9Q152) RNA polymerase II second largest subuni... 94 1e-17
D5JC71_9HOMO (tr|D5JC71) RNA polymerase II second largest subuni... 94 1e-17
D5JC58_9HOMO (tr|D5JC58) RNA polymerase II second largest subuni... 94 1e-17
D5JC57_9HOMO (tr|D5JC57) RNA polymerase II second largest subuni... 94 1e-17
D5JC55_9HOMO (tr|D5JC55) RNA polymerase II second largest subuni... 94 1e-17
D5JC54_9HOMO (tr|D5JC54) RNA polymerase II second largest subuni... 94 1e-17
D5JC37_9HOMO (tr|D5JC37) RNA polymerase II second largest subuni... 94 1e-17
D5JBZ5_9HOMO (tr|D5JBZ5) RNA polymerase II second largest subuni... 94 1e-17
D5JBY1_9HOMO (tr|D5JBY1) RNA polymerase II second largest subuni... 94 1e-17
D5JBX5_9HOMO (tr|D5JBX5) RNA polymerase II second largest subuni... 94 1e-17
D5JBZ0_9HOMO (tr|D5JBZ0) RNA polymerase II second largest subuni... 94 1e-17
D5JBY9_9HOMO (tr|D5JBY9) RNA polymerase II second largest subuni... 94 1e-17
Q873U3_9AGAR (tr|Q873U3) DNA-directed RNA polymerase (Fragment) ... 94 1e-17
A3QRQ0_9HOMO (tr|A3QRQ0) RNA polymerase II second largest subuni... 94 1e-17
D5JC52_9HOMO (tr|D5JC52) RNA polymerase II second largest subuni... 94 1e-17
D5JC01_9HOMO (tr|D5JC01) RNA polymerase II second largest subuni... 94 1e-17
D5JC23_9HOMO (tr|D5JC23) RNA polymerase II second largest subuni... 94 1e-17
D5JC20_9HOMO (tr|D5JC20) RNA polymerase II second largest subuni... 94 1e-17
D5JC10_9HOMO (tr|D5JC10) RNA polymerase II second largest subuni... 94 1e-17
D5JC04_9HOMO (tr|D5JC04) RNA polymerase II second largest subuni... 94 1e-17
D5JBZ9_9HOMO (tr|D5JBZ9) RNA polymerase II second largest subuni... 94 1e-17
Q5EG79_9HOMO (tr|Q5EG79) DNA-directed RNA polymerase (Fragment) ... 94 1e-17
Q2ERY9_9HOMO (tr|Q2ERY9) DNA-directed RNA polymerase (Fragment) ... 94 2e-17
D5JC30_9HOMO (tr|D5JC30) RNA polymerase II second largest subuni... 94 2e-17
D5JBZ2_9HOMO (tr|D5JBZ2) RNA polymerase II second largest subuni... 94 2e-17
A9Q154_9AGAR (tr|A9Q154) RNA polymerase II second largest subuni... 93 2e-17
D2U5A7_9CEST (tr|D2U5A7) RNA polymerase II (Fragment) OS=Taenia ... 93 2e-17
A3QRN8_9HOMO (tr|A3QRN8) RNA polymerase II second largest subuni... 93 2e-17
D5JBY6_9HOMO (tr|D5JBY6) RNA polymerase II second largest subuni... 93 2e-17
D5JC65_9HOMO (tr|D5JC65) RNA polymerase II second largest subuni... 93 2e-17
D5JC24_9HOMO (tr|D5JC24) RNA polymerase II second largest subuni... 93 2e-17
Q2HXY9_9AGAR (tr|Q2HXY9) RNA polymerase II second largest subuni... 93 2e-17
Q5S3L7_9HOMO (tr|Q5S3L7) DNA-directed RNA polymerase (Fragment) ... 93 2e-17
Q7Z836_9AGAR (tr|Q7Z836) RNA polymerase II second largest subuni... 93 2e-17
Q7Z7Y2_9AGAR (tr|Q7Z7Y2) RNA polymerase II second largest subuni... 93 2e-17
Q207G7_9APHY (tr|Q207G7) DNA-directed RNA polymerase (Fragment) ... 93 2e-17
C0K1A6_9HOMO (tr|C0K1A6) RNA polymerase II subunit 2 (Fragment) ... 93 2e-17
A3QRR8_9HOMO (tr|A3QRR8) RNA polymerase II second largest subuni... 93 2e-17
D2U5A8_9CEST (tr|D2U5A8) RNA polymerase II (Fragment) OS=Taenia ... 93 2e-17
A3QRU4_9HOMO (tr|A3QRU4) RNA polymerase II second largest subuni... 93 2e-17
D5JC28_9HOMO (tr|D5JC28) RNA polymerase II second largest subuni... 93 2e-17
D5JC62_9HOMO (tr|D5JC62) RNA polymerase II second largest subuni... 93 2e-17
A3QRR6_9HOMO (tr|A3QRR6) RNA polymerase II second largest subuni... 93 2e-17
A3QRT7_9HOMO (tr|A3QRT7) RNA polymerase II second largest subuni... 93 3e-17
A3QRU1_9HOMO (tr|A3QRU1) RNA polymerase II second largest subuni... 93 3e-17
Q27S76_9AGAR (tr|Q27S76) DNA-directed RNA polymerase (Fragment) ... 93 3e-17
A3QRR0_9HOMO (tr|A3QRR0) RNA polymerase II second largest subuni... 93 3e-17
D3BHD6_POLPA (tr|D3BHD6) DNA-directed RNA polymerase OS=Polyspho... 92 3e-17
A3QRT3_9HOMO (tr|A3QRT3) RNA polymerase II second largest subuni... 92 3e-17
D2U5A1_9CEST (tr|D2U5A1) RNA polymerase II (Fragment) OS=Echinoc... 92 3e-17
D2U5A0_9CEST (tr|D2U5A0) RNA polymerase II (Fragment) OS=Echinoc... 92 3e-17
D2U599_9CEST (tr|D2U599) RNA polymerase II (Fragment) OS=Echinoc... 92 3e-17
D2U598_ECHGR (tr|D2U598) RNA polymerase II (Fragment) OS=Echinoc... 92 3e-17
D2U597_9CEST (tr|D2U597) RNA polymerase II (Fragment) OS=Echinoc... 92 3e-17
D2U596_ECHOL (tr|D2U596) RNA polymerase II (Fragment) OS=Echinoc... 92 3e-17
D2U595_9CEST (tr|D2U595) RNA polymerase II (Fragment) OS=Echinoc... 92 3e-17
A9Q164_9AGAR (tr|A9Q164) RNA polymerase II second largest subuni... 92 3e-17
D5JBX8_9HOMO (tr|D5JBX8) RNA polymerase II second largest subuni... 92 3e-17
C4Q1D7_SCHMA (tr|C4Q1D7) DNA-directed RNA polymerase OS=Schistos... 92 3e-17
Q207G6_9APHY (tr|Q207G6) DNA-directed RNA polymerase (Fragment) ... 92 4e-17
A9Q160_9AGAR (tr|A9Q160) RNA polymerase II second largest subuni... 92 4e-17
C1ML14_MICPS (tr|C1ML14) DNA-directed RNA polymerase OS=Micromon... 92 4e-17
A3QRU8_9HOMO (tr|A3QRU8) RNA polymerase II second largest subuni... 92 4e-17
A9Q142_9AGAR (tr|A9Q142) RNA polymerase II second largest subuni... 92 4e-17
Q207G8_9HOMO (tr|Q207G8) DNA-directed RNA polymerase (Fragment) ... 92 4e-17
Q1KLL5_9APHY (tr|Q1KLL5) DNA-directed RNA polymerase (Fragment) ... 92 4e-17
A3QRS9_9HOMO (tr|A3QRS9) RNA polymerase II second largest subuni... 92 4e-17
Q5S3M4_9HOMO (tr|Q5S3M4) DNA-directed RNA polymerase (Fragment) ... 92 4e-17
D2U594_9CEST (tr|D2U594) RNA polymerase II (Fragment) OS=Echinoc... 92 4e-17
Q5S3M8_FLAVE (tr|Q5S3M8) DNA-directed RNA polymerase (Fragment) ... 92 5e-17
A9Q145_LYODE (tr|A9Q145) RNA polymerase II second largest subuni... 92 5e-17
C0K1A1_9HOMO (tr|C0K1A1) RNA polymerase II subunit 2 (Fragment) ... 92 5e-17
A3QRS7_9HOMO (tr|A3QRS7) RNA polymerase II second largest subuni... 92 5e-17
Q2ERY5_9HOMO (tr|Q2ERY5) DNA-directed RNA polymerase (Fragment) ... 92 5e-17
A3QRT1_9HOMO (tr|A3QRT1) RNA polymerase II second largest subuni... 92 5e-17
Q0MT73_WALMU (tr|Q0MT73) RNA polymerase II second largest subuni... 92 5e-17
Q2HXZ0_LYODE (tr|Q2HXZ0) RNA polymerase II second largest subuni... 92 5e-17
A3QV25_9HYPO (tr|A3QV25) RNA polymerase II second largest subuni... 92 5e-17
A3QV31_9HYPO (tr|A3QV31) RNA polymerase II second largest subuni... 92 5e-17
A1YIE4_NEOFR (tr|A1YIE4) DNA-directed RNA polymerase (Fragment) ... 92 6e-17
A9Q141_9AGAR (tr|A9Q141) RNA polymerase II second largest subuni... 92 6e-17
C0NB61_AJECG (tr|C0NB61) DNA-directed RNA polymerase OS=Ajellomy... 91 7e-17
A9Q132_9AGAR (tr|A9Q132) RNA polymerase II second largest subuni... 91 7e-17
A3QV27_9HYPO (tr|A3QV27) RNA polymerase II second largest subuni... 91 7e-17
A6R483_AJECN (tr|A6R483) DNA-directed RNA polymerase OS=Ajellomy... 91 7e-17
D2U593_ECHMU (tr|D2U593) RNA polymerase II (Fragment) OS=Echinoc... 91 8e-17
O64986_PEPCA (tr|O64986) DNA-directed RNA polymerase (Fragment) ... 91 8e-17
A6XIA7_9PEZI (tr|A6XIA7) RNA polymerase II subunit 2 (Fragment) ... 91 8e-17
D2U5B0_9CEST (tr|D2U5B0) RNA polymerase II (Fragment) OS=Taenia ... 91 9e-17
Q27T11_9HOMO (tr|Q27T11) DNA-directed RNA polymerase (Fragment) ... 91 9e-17
C0K183_9HOMO (tr|C0K183) RNA polymerase II subunit 2 (Fragment) ... 91 9e-17
D5JC63_9HOMO (tr|D5JC63) RNA polymerase II second largest subuni... 91 9e-17
A9Q143_9AGAR (tr|A9Q143) RNA polymerase II second largest subuni... 91 9e-17
D2U5A9_9CEST (tr|D2U5A9) RNA polymerase II (Fragment) OS=Taenia ... 91 1e-16
Q873U0_PHLRA (tr|Q873U0) DNA-directed RNA polymerase (Fragment) ... 91 1e-16
Q0PJ48_9AGAR (tr|Q0PJ48) RNA polymerase II second largest subuni... 91 1e-16
D2U5B1_TAEOV (tr|D2U5B1) RNA polymerase II (Fragment) OS=Taenia ... 91 1e-16
D2U5A6_TAEAS (tr|D2U5A6) RNA polymerase II (Fragment) OS=Taenia ... 91 1e-16
D2U5A5_TAESA (tr|D2U5A5) RNA polymerase II (Fragment) OS=Taenia ... 91 1e-16
D2U5A4_TAESO (tr|D2U5A4) RNA polymerase II (Fragment) OS=Taenia ... 91 1e-16
Q7Z8B1_9AGAR (tr|Q7Z8B1) RNA polymerase II second largest subuni... 91 1e-16
Q0PJ51_9AGAR (tr|Q0PJ51) RNA polymerase II second largest subuni... 91 1e-16
Q6Q266_PLAOI (tr|Q6Q266) DNA-directed RNA polymerase (Fragment) ... 91 1e-16
A9Q163_9AGAR (tr|A9Q163) RNA polymerase II second largest subuni... 91 1e-16
A3QRR1_9HOMO (tr|A3QRR1) RNA polymerase II second largest subuni... 91 1e-16
Q6Q260_9MAGN (tr|Q6Q260) DNA-directed RNA polymerase (Fragment) ... 91 1e-16
A3QRS3_9HOMO (tr|A3QRS3) RNA polymerase II second largest subuni... 91 1e-16
C0K198_9HOMO (tr|C0K198) RNA polymerase II subunit 2 (Fragment) ... 91 1e-16
C1E1U0_9CHLO (tr|C1E1U0) DNA-directed RNA polymerase OS=Micromon... 90 2e-16
Q5RM00_9HOMO (tr|Q5RM00) DNA-directed RNA polymerase (Fragment) ... 90 2e-16
A9SJE5_PHYPA (tr|A9SJE5) DNA-directed RNA polymerase OS=Physcomi... 90 2e-16
A9Q150_9AGAR (tr|A9Q150) RNA polymerase II second largest subuni... 90 2e-16
A9Q151_9AGAR (tr|A9Q151) RNA polymerase II second largest subuni... 90 2e-16
A3QV09_9HYPO (tr|A3QV09) RNA polymerase II second largest subuni... 90 2e-16
Q1L6C8_9MAGN (tr|Q1L6C8) RNA polymerase II second largest subuni... 90 2e-16
Q6Q269_LIRTU (tr|Q6Q269) DNA-directed RNA polymerase (Fragment) ... 90 2e-16
Q207F9_9HOMO (tr|Q207F9) RNA polymerase II second largest subuni... 90 2e-16
Q1L5B1_LIRTU (tr|Q1L5B1) DNA-directed RNA polymerase (Fragment) ... 90 2e-16
A3QV05_9HYPO (tr|A3QV05) RNA polymerase II second largest subuni... 90 2e-16
A3QV19_9HYPO (tr|A3QV19) RNA polymerase II second largest subuni... 89 2e-16
Q2I5T8_9FUNG (tr|Q2I5T8) DNA-directed RNA polymerase (Fragment) ... 89 2e-16
Q0PJ52_9AGAR (tr|Q0PJ52) RNA polymerase II second largest subuni... 89 2e-16
A9Q149_9AGAR (tr|A9Q149) RNA polymerase II second largest subuni... 89 2e-16
A3QV32_9HYPO (tr|A3QV32) RNA polymerase II second largest subuni... 89 2e-16
A3QV18_9HYPO (tr|A3QV18) RNA polymerase II second largest subuni... 89 2e-16
C0K195_PISTI (tr|C0K195) RNA polymerase II subunit 2 (Fragment) ... 89 3e-16
A3QV22_9HYPO (tr|A3QV22) RNA polymerase II second largest subuni... 89 3e-16
A3QV06_9HYPO (tr|A3QV06) RNA polymerase II second largest subuni... 89 3e-16
C4R793_PICPG (tr|C4R793) DNA-directed RNA polymerase OS=Pichia p... 89 3e-16
A2RQN8_WELMI (tr|A2RQN8) DNA-directed RNA polymerase (Fragment) ... 89 3e-16
Q7Z804_9AGAR (tr|Q7Z804) RNA polymerase II second largest subuni... 89 3e-16
A9Q148_9AGAR (tr|A9Q148) RNA polymerase II second largest subuni... 89 3e-16
Q207G9_9APHY (tr|Q207G9) DNA-directed RNA polymerase (Fragment) ... 89 3e-16
Q0PJ49_9AGAR (tr|Q0PJ49) RNA polymerase II second largest subuni... 89 4e-16
A4K3E7_9HYPO (tr|A4K3E7) DNA-dependent RNA polymerase II second ... 89 4e-16
Q873T6_9APHY (tr|Q873T6) RNA polymerase II subunit RPB2 (Fragmen... 89 4e-16
O48911_MAGVI (tr|O48911) DNA-directed RNA polymerase (Fragment) ... 89 4e-16
A9Q136_9AGAR (tr|A9Q136) RNA polymerase II second largest subuni... 89 4e-16
A3QRU5_9HOMO (tr|A3QRU5) RNA polymerase II second largest subuni... 89 5e-16
Q1L6C2_HYDCA (tr|Q1L6C2) RNA polymerase II second largest subuni... 88 6e-16
Q207H0_IRPLA (tr|Q207H0) RNA polymerase II second largest subuni... 88 6e-16
A3QRU3_9HOMO (tr|A3QRU3) RNA polymerase II second largest subuni... 88 6e-16
A4K3E5_9HYPO (tr|A4K3E5) DNA-dependent RNA polymerase II second ... 88 7e-16
A4K3E3_9PEZI (tr|A4K3E3) DNA-dependent RNA polymerase II second ... 88 7e-16
Q7Z8A7_9AGAR (tr|Q7Z8A7) RNA polymerase II second largest subuni... 88 8e-16
A3QRS6_9HOMO (tr|A3QRS6) RNA polymerase II second largest subuni... 88 8e-16
D5JC43_9HOMO (tr|D5JC43) RNA polymerase II second largest subuni... 88 8e-16
A3QUZ1_9HYPO (tr|A3QUZ1) RNA polymerase II second largest subuni... 88 9e-16
A3QUX4_9HYPO (tr|A3QUX4) RNA polymerase II second largest subuni... 88 9e-16
Q6QDX1_CORMI (tr|Q6QDX1) RNA polymerase II subunit (Fragment) OS... 88 9e-16
Q7Z834_9AGAR (tr|Q7Z834) RNA polymerase II second largest subuni... 87 1e-15
Q1ANE8_9TRAC (tr|Q1ANE8) DNA-directed RNA polymerase (Fragment) ... 87 1e-15
D5JC49_9HOMO (tr|D5JC49) RNA polymerase II second largest subuni... 87 1e-15
Q6Q2T5_TROAR (tr|Q6Q2T5) DNA-directed RNA polymerase (Fragment) ... 87 1e-15
A5H2I4_9LECA (tr|A5H2I4) DNA-directed RNA polymerase (Fragment) ... 87 1e-15
A3QRP8_9HOMO (tr|A3QRP8) RNA polymerase II second largest subuni... 87 1e-15
Q5U7W1_9AGAR (tr|Q5U7W1) DNA-directed RNA polymerase (Fragment) ... 87 1e-15
A3QRP4_9HOMO (tr|A3QRP4) RNA polymerase II second largest subuni... 87 1e-15
A7ATA0_BABBO (tr|A7ATA0) DNA-directed RNA polymerase OS=Babesia ... 87 1e-15
A3QRP0_9HOMO (tr|A3QRP0) RNA polymerase II second largest subuni... 87 1e-15
A8NJT3_COPC7 (tr|A8NJT3) DNA-directed RNA polymerase OS=Coprinop... 87 1e-15
D5JBY8_9HOMO (tr|D5JBY8) RNA polymerase II second largest subuni... 87 1e-15
A8PVW9_MALGO (tr|A8PVW9) DNA-directed RNA polymerase OS=Malassez... 87 2e-15
A5X5E2_9PEZI (tr|A5X5E2) RNA polymerase II subunit (Fragment) OS... 87 2e-15
A4U9Q8_VERDA (tr|A4U9Q8) RNA polymerase II second largest subuni... 87 2e-15
Q0PJ50_9APHY (tr|Q0PJ50) RNA polymerase II second largest subuni... 87 2e-15
A3QRR9_9HOMO (tr|A3QRR9) RNA polymerase II second largest subuni... 87 2e-15
Q7Z8A8_9AGAR (tr|Q7Z8A8) RNA polymerase II second largest subuni... 86 2e-15
B0FDF7_9AGAR (tr|B0FDF7) RNA polymerase II second largest subuni... 86 2e-15
Q7Z7Z1_9AGAR (tr|Q7Z7Z1) RNA polymerase II second largest subuni... 86 2e-15
A7KM13_9HYPO (tr|A7KM13) RNA polymerase II (Fragment) OS=Fusariu... 86 2e-15
Q9UV79_9PEZI (tr|Q9UV79) DNA-directed RNA polymerase (Fragment) ... 86 3e-15
Q1KLM5_9AGAR (tr|Q1KLM5) RNA polymerase II second largest subuni... 86 3e-15
C4NZR4_9PEZI (tr|C4NZR4) DNA-directed RNA polymerase (Fragment) ... 86 3e-15
B0FDF5_9AGAR (tr|B0FDF5) RNA polymerase II second largest subuni... 86 3e-15
O96236_PLAF7 (tr|O96236) DNA-directed RNA polymerase OS=Plasmodi... 86 3e-15
Q1KM06_CORVI (tr|Q1KM06) RNA polymerase II second largest subuni... 86 3e-15
A4I6A8_LEIIN (tr|A4I6A8) DNA-directed RNA polymerase OS=Leishman... 86 3e-15
A3QRU6_9HOMO (tr|A3QRU6) RNA polymerase II second largest subuni... 86 3e-15
A4HIZ1_LEIBR (tr|A4HIZ1) DNA-directed RNA polymerase OS=Leishman... 86 4e-15
Q9UVA2_9ASCO (tr|Q9UVA2) DNA-directed RNA polymerase (Fragment) ... 85 5e-15
A1YIE3_NEOFR (tr|A1YIE3) DNA-directed RNA polymerase (Fragment) ... 85 7e-15
A3QRQ7_9HOMO (tr|A3QRQ7) RNA polymerase II second largest subuni... 85 7e-15
A4U9N2_9PEZI (tr|A4U9N2) RNA polymerase II second largest subuni... 85 7e-15
A7J148_9PEZI (tr|A7J148) RNA polymerase II second largest subuni... 85 7e-15
Q0MT74_WALIC (tr|Q0MT74) RNA polymerase II second largest subuni... 84 8e-15
C0K189_9HOMO (tr|C0K189) RNA polymerase II subunit 2 (Fragment) ... 84 9e-15
D6MUP0_9PEZI (tr|D6MUP0) DNA-dependent RNA polymerase II second ... 84 9e-15
C0K175_9HOMO (tr|C0K175) RNA polymerase II subunit 2 (Fragment) ... 84 9e-15
C0K196_9HOMO (tr|C0K196) RNA polymerase II subunit 2 (Fragment) ... 84 1e-14
Q2I5S4_9FUNG (tr|Q2I5S4) DNA-directed RNA polymerase (Fragment) ... 84 1e-14
D6MUR4_9PEZI (tr|D6MUR4) DNA-dependent RNA polymerase II second ... 84 1e-14
Q4Q6P8_LEIMA (tr|Q4Q6P8) DNA-directed RNA polymerase OS=Leishman... 84 1e-14
D6MUN7_9PEZI (tr|D6MUN7) DNA-dependent RNA polymerase II second ... 84 1e-14
Q7Z814_9AGAR (tr|Q7Z814) RNA polymerase II second largest subuni... 84 1e-14
D6MUR6_9PEZI (tr|D6MUR6) DNA-dependent RNA polymerase II second ... 84 1e-14
A5X5E3_9PEZI (tr|A5X5E3) RNA polymerase II subunit (Fragment) OS... 84 2e-14
D6MUR5_9PEZI (tr|D6MUR5) DNA-dependent RNA polymerase II second ... 84 2e-14
D6MUR7_9PEZI (tr|D6MUR7) DNA-dependent RNA polymerase II second ... 84 2e-14
D6MUR8_9PEZI (tr|D6MUR8) DNA-dependent RNA polymerase II second ... 84 2e-14
B8Y3L8_9PEZI (tr|B8Y3L8) DNA-directed RNA polymerase (Fragment) ... 84 2e-14
D6MUS1_9PEZI (tr|D6MUS1) DNA-dependent RNA polymerase II second ... 84 2e-14
D6MUS0_9PEZI (tr|D6MUS0) DNA-dependent RNA polymerase II second ... 84 2e-14
Q6RYG7_PNECA (tr|Q6RYG7) DNA-directed RNA polymerase (Fragment) ... 84 2e-14
A1YIC9_9FUNG (tr|A1YIC9) DNA-directed RNA polymerase (Fragment) ... 84 2e-14
Q6R7N8_9AGAR (tr|Q6R7N8) RNA polymerase II second largest subuni... 83 2e-14
D6MUP1_9PEZI (tr|D6MUP1) DNA-dependent RNA polymerase II second ... 83 2e-14
D6MUR1_9PEZI (tr|D6MUR1) DNA-dependent RNA polymerase II second ... 83 2e-14
D6MUQ5_9PEZI (tr|D6MUQ5) DNA-dependent RNA polymerase II second ... 83 2e-14
D6MUQ1_9PEZI (tr|D6MUQ1) DNA-dependent RNA polymerase II second ... 83 2e-14
D6MUP4_9PEZI (tr|D6MUP4) DNA-dependent RNA polymerase II second ... 83 2e-14
D6MUP3_9PEZI (tr|D6MUP3) DNA-dependent RNA polymerase II second ... 83 2e-14
D6MUP2_9PEZI (tr|D6MUP2) DNA-dependent RNA polymerase II second ... 83 2e-14
D6MUN9_9PEZI (tr|D6MUN9) DNA-dependent RNA polymerase II second ... 83 2e-14
D6MUR3_9PEZI (tr|D6MUR3) DNA-dependent RNA polymerase II second ... 83 2e-14
D6MUR2_9PEZI (tr|D6MUR2) DNA-dependent RNA polymerase II second ... 83 2e-14
D6MUQ6_9PEZI (tr|D6MUQ6) DNA-dependent RNA polymerase II second ... 83 2e-14
Q7Z810_9AGAR (tr|Q7Z810) RNA polymerase II second largest subuni... 83 2e-14
A5X5D8_9PEZI (tr|A5X5D8) RNA polymerase II subunit (Fragment) OS... 83 2e-14
Q7Z8B0_9AGAR (tr|Q7Z8B0) DNA-directed RNA polymerase (Fragment) ... 83 2e-14
A5X5E6_9PEZI (tr|A5X5E6) RNA polymerase II subunit (Fragment) OS... 83 2e-14
D6MUP6_9PEZI (tr|D6MUP6) DNA-dependent RNA polymerase II second ... 83 2e-14
Q5EGJ2_9HOMO (tr|Q5EGJ2) DNA-directed RNA polymerase (Fragment) ... 83 3e-14
A8MBV1_CALMQ (tr|A8MBV1) DNA-directed RNA polymerase OS=Caldivir... 83 3e-14
Q207H2_9AGAR (tr|Q207H2) DNA-directed RNA polymerase (Fragment) ... 83 3e-14
D6MUP7_9PEZI (tr|D6MUP7) DNA-dependent RNA polymerase II second ... 83 3e-14
D6MUP5_9PEZI (tr|D6MUP5) DNA-dependent RNA polymerase II second ... 83 3e-14
B7U611_9AGAR (tr|B7U611) RNA polymerase II second largest subuni... 82 3e-14
Q207H4_9AGAR (tr|Q207H4) RNA polymerase II second largest subuni... 82 3e-14
Q199T1_9AGAR (tr|Q199T1) RNA polymerase II second largest subuni... 82 3e-14
Q1KLA2_9AGAR (tr|Q1KLA2) RNA polymerase II second largest subuni... 82 3e-14
Q6CAD6_YARLI (tr|Q6CAD6) DNA-directed RNA polymerase OS=Yarrowia... 82 3e-14
A4K3F7_9PEZI (tr|A4K3F7) DNA-dependent RNA polymerase II second ... 82 3e-14
A9Q135_9AGAR (tr|A9Q135) RNA polymerase II second largest subuni... 82 3e-14
Q1KLA3_9AGAR (tr|Q1KLA3) RNA polymerase II second largest subuni... 82 3e-14
Q6QJD4_CORIO (tr|Q6QJD4) DNA-directed RNA polymerase (Fragment) ... 82 3e-14
A6XIA4_9PEZI (tr|A6XIA4) RNA polymerase II subunit 2 (Fragment) ... 82 3e-14
A7KM07_9HYPO (tr|A7KM07) RNA polymerase II (Fragment) OS=Fusariu... 82 3e-14
Q1HHT9_9AGAR (tr|Q1HHT9) RNA polymerase II second largest subuni... 82 4e-14
B8Q233_9ASCO (tr|B8Q233) RNA polymerase II subunit (Fragment) OS... 82 4e-14
C7E2U4_9PEZI (tr|C7E2U4) RNA polymerase II subunit (Fragment) OS... 82 4e-14
C3U5T1_9PEZI (tr|C3U5T1) RNA polymerase II subunit (Fragment) OS... 82 4e-14
Q5S3M1_PLEOS (tr|Q5S3M1) DNA-directed RNA polymerase (Fragment) ... 82 4e-14
Q0PIW0_9GLOM (tr|Q0PIW0) DNA-directed RNA polymerase (Fragment) ... 82 4e-14
Q0PPZ2_9PEZI (tr|Q0PPZ2) DNA-directed RNA polymerase (Fragment) ... 82 4e-14
Q7Z8D2_9AGAR (tr|Q7Z8D2) RNA polymerase II subunit (Fragment) OS... 82 4e-14
D6MV04_9PEZI (tr|D6MV04) DNA-dependent RNA polymerase II second ... 82 4e-14
D6MUT8_9PEZI (tr|D6MUT8) DNA-dependent RNA polymerase II second ... 82 5e-14
D6MV05_9PEZI (tr|D6MV05) DNA-dependent RNA polymerase II second ... 82 5e-14
D6MUZ7_9PEZI (tr|D6MUZ7) DNA-dependent RNA polymerase II second ... 82 5e-14
Q0PH48_9HOMO (tr|Q0PH48) RNA polymerase II second largest subuni... 82 5e-14
A9CSV4_ENTBH (tr|A9CSV4) DNA-directed RNA polymerase OS=Enterocy... 82 5e-14
D6MV06_9PEZI (tr|D6MV06) DNA-dependent RNA polymerase II second ... 82 5e-14
D6MV03_9PEZI (tr|D6MV03) DNA-dependent RNA polymerase II second ... 82 5e-14
Q1KLM2_9AGAR (tr|Q1KLM2) RNA polymerase II second largest subuni... 82 5e-14
D6MV02_9PEZI (tr|D6MV02) DNA-dependent RNA polymerase II second ... 82 5e-14
Q7Z8A6_9AGAR (tr|Q7Z8A6) RNA polymerase II second largest subuni... 82 6e-14
Q7Z8A5_9AGAR (tr|Q7Z8A5) RNA polymerase II second largest subuni... 82 6e-14
D6MV09_9PEZI (tr|D6MV09) DNA-dependent RNA polymerase II second ... 82 6e-14
Q5U7W6_9AGAR (tr|Q5U7W6) DNA-directed RNA polymerase (Fragment) ... 82 6e-14
D6MV01_9PEZI (tr|D6MV01) DNA-dependent RNA polymerase II second ... 82 6e-14
A7J5A6_9LECA (tr|A7J5A6) DNA-directed RNA polymerase (Fragment) ... 82 6e-14
D6MUQ0_9PEZI (tr|D6MUQ0) DNA-dependent RNA polymerase II second ... 82 6e-14
D3K539_MYCPJ (tr|D3K539) RNA polymerase II second largest subuni... 82 6e-14
Q6RYI7_9LECA (tr|Q6RYI7) DNA-directed RNA polymerase (Fragment) ... 82 6e-14
D6MV08_9PEZI (tr|D6MV08) DNA-dependent RNA polymerase II second ... 82 6e-14
D6MUN8_9PEZI (tr|D6MUN8) DNA-dependent RNA polymerase II second ... 82 6e-14
B4UWV0_9LECA (tr|B4UWV0) DNA-dependent RNA polymerase II second ... 82 6e-14
B4UWU8_9LECA (tr|B4UWU8) DNA-dependent RNA polymerase II second ... 82 6e-14
D1JEK1_9ARCH (tr|D1JEK1) DNA-directed RNA polymerase OS=uncultur... 82 6e-14
Q1HHT8_9AGAR (tr|Q1HHT8) RNA polymerase II second largest subuni... 82 7e-14
D6MV07_9PEZI (tr|D6MV07) DNA-dependent RNA polymerase II second ... 82 7e-14
A4K3F8_9PEZI (tr|A4K3F8) DNA-dependent RNA polymerase II second ... 81 7e-14
D6MUL9_9PEZI (tr|D6MUL9) DNA-dependent RNA polymerase II second ... 81 7e-14
A6XIA3_9PEZI (tr|A6XIA3) RNA polymerase II subunit 2 (Fragment) ... 81 7e-14
Q207F2_9HOMO (tr|Q207F2) RNA polymerase II second largest subuni... 81 7e-14
Q5US46_9PEZI (tr|Q5US46) DNA-directed RNA polymerase (Fragment) ... 81 7e-14
D6MPD7_9PEZI (tr|D6MPD7) DNA-dependent RNA polymerase II second ... 81 7e-14
Q1KLL8_9AGAR (tr|Q1KLL8) RNA polymerase II second largest subuni... 81 8e-14
Q5C8E5_9PEZI (tr|Q5C8E5) RNA polymerase II subunit (Fragment) OS... 81 8e-14
Q5C8C9_9PEZI (tr|Q5C8C9) RNA polymerase II subunit (Fragment) OS... 81 8e-14
Q19LA4_9HOMO (tr|Q19LA4) DNA-directed RNA polymerase (Fragment) ... 81 8e-14
D6MUN6_9PEZI (tr|D6MUN6) DNA-dependent RNA polymerase II second ... 81 9e-14
C4QZQ7_PICPG (tr|C4QZQ7) DNA-directed RNA polymerase OS=Pichia p... 81 9e-14
Q1KLK6_9AGAR (tr|Q1KLK6) DNA-directed RNA polymerase (Fragment) ... 81 9e-14
D6MUZ8_9PEZI (tr|D6MUZ8) DNA-dependent RNA polymerase II second ... 81 9e-14
D6MUP9_9PEZI (tr|D6MUP9) DNA-dependent RNA polymerase II second ... 81 9e-14
A5X5E4_9PEZI (tr|A5X5E4) RNA polymerase II subunit (Fragment) OS... 81 9e-14
Q5US36_9ASCO (tr|Q5US36) DNA-directed RNA polymerase (Fragment) ... 81 9e-14
D6MUN4_9PEZI (tr|D6MUN4) DNA-dependent RNA polymerase II second ... 81 9e-14
Q1KLM0_9AGAR (tr|Q1KLM0) DNA-directed RNA polymerase (Fragment) ... 81 1e-13
D6MUQ2_9PEZI (tr|D6MUQ2) DNA-dependent RNA polymerase II second ... 81 1e-13
C4Y486_CLAL4 (tr|C4Y486) DNA-directed RNA polymerase OS=Clavispo... 81 1e-13
D6MUP8_9PEZI (tr|D6MUP8) DNA-dependent RNA polymerase II second ... 81 1e-13
D6MUN5_9PEZI (tr|D6MUN5) DNA-dependent RNA polymerase II second ... 81 1e-13
Q6RYG5_9ASCO (tr|Q6RYG5) DNA-directed RNA polymerase (Fragment) ... 81 1e-13
B6K5Q5_SCHJY (tr|B6K5Q5) DNA-directed RNA polymerase OS=Schizosa... 81 1e-13
A1YID0_9FUNG (tr|A1YID0) DNA-directed RNA polymerase (Fragment) ... 81 1e-13
Q5US87_9LECA (tr|Q5US87) DNA-directed RNA polymerase (Fragment) ... 81 1e-13
D6MUN1_9PEZI (tr|D6MUN1) DNA-dependent RNA polymerase II second ... 81 1e-13
Q5US79_9LECA (tr|Q5US79) DNA-directed RNA polymerase (Fragment) ... 81 1e-13
D6MUZ9_9PEZI (tr|D6MUZ9) DNA-dependent RNA polymerase II second ... 80 1e-13
D6MUS7_9PEZI (tr|D6MUS7) DNA-dependent RNA polymerase II second ... 80 1e-13
Q6H191_9ASCO (tr|Q6H191) RNA polymerase II second largest subuni... 80 1e-13
D6MV10_9PEZI (tr|D6MV10) DNA-dependent RNA polymerase II second ... 80 1e-13
D6MUN2_9PEZI (tr|D6MUN2) DNA-dependent RNA polymerase II second ... 80 1e-13
A3QZB6_9PEZI (tr|A3QZB6) RNA polymerase II subunit 2 (Fragment) ... 80 1e-13
Q7Z8D1_9AGAR (tr|Q7Z8D1) RNA polymerase II subunit (Fragment) OS... 80 1e-13
Q5U7W8_9HOMO (tr|Q5U7W8) DNA-directed RNA polymerase (Fragment) ... 80 1e-13
D6MV00_9PEZI (tr|D6MV00) DNA-dependent RNA polymerase II second ... 80 1e-13
Q1KLA4_9AGAR (tr|Q1KLA4) RNA polymerase II second largest subuni... 80 1e-13
D6MUT3_9PEZI (tr|D6MUT3) DNA-dependent RNA polymerase II second ... 80 1e-13
D6MUT2_9PEZI (tr|D6MUT2) DNA-dependent RNA polymerase II second ... 80 1e-13
D6MUT0_9PEZI (tr|D6MUT0) DNA-dependent RNA polymerase II second ... 80 1e-13
D6MUS9_9PEZI (tr|D6MUS9) DNA-dependent RNA polymerase II second ... 80 1e-13
D6MUS8_9PEZI (tr|D6MUS8) DNA-dependent RNA polymerase II second ... 80 1e-13
D6MUQ7_9PEZI (tr|D6MUQ7) DNA-dependent RNA polymerase II second ... 80 1e-13
D7RJ30_9HYPO (tr|D7RJ30) RNA polymerase II beta subunit (Fragmen... 80 1e-13
D7RJ28_9HYPO (tr|D7RJ28) RNA polymerase II beta subunit (Fragmen... 80 1e-13
D7RJ26_9HYPO (tr|D7RJ26) RNA polymerase II beta subunit (Fragmen... 80 1e-13
D7RJ22_9HYPO (tr|D7RJ22) RNA polymerase II beta subunit (Fragmen... 80 1e-13
Q5C8B8_9PEZI (tr|Q5C8B8) RNA polymerase II subunit (Fragment) OS... 80 1e-13
D6MV11_9PEZI (tr|D6MV11) DNA-dependent RNA polymerase II second ... 80 1e-13
>B9IL57_POPTR (tr|B9IL57) DNA-directed RNA polymerase OS=Populus trichocarpa
GN=POPTRDRAFT_737361 PE=3 SV=1
Length = 1160
Score = 325 bits (833), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 165/229 (72%), Positives = 181/229 (79%), Gaps = 4/229 (1%)
Query: 7 DSRF---STQGRLEMLDTH-GENCGLVKNLAITGLVSTEILEPLIDILFDCGMDKLVDDT 62
D+R+ S GR+ L T GENCGLVKNLA+TG+VST I E L+D LFD GM+KLVDDT
Sbjct: 496 DARYPHPSHWGRVCFLSTPDGENCGLVKNLAVTGVVSTNISESLVDKLFDSGMEKLVDDT 555
Query: 63 HTKLDEKYKVFLNGEWVGVCEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADA 122
+TKLD K+KVFLNGEWVGVCEDS LFV E QVEIKRDEQQ+EVRIF+DA
Sbjct: 556 YTKLDGKHKVFLNGEWVGVCEDSCLFVGELRSMRRRRELPYQVEIKRDEQQREVRIFSDA 615
Query: 123 GRILRPLLVVENLHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVD 182
GRILRPLLVVENL KIKAFKGGNY F SLLDK DC TAWGIKFL+A ++
Sbjct: 616 GRILRPLLVVENLDKIKAFKGGNYIFTSLLDKGIIEFIGTEEEEDCCTAWGIKFLLADIE 675
Query: 183 KKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
KQP+KY+HCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG
Sbjct: 676 GKQPMKYSHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 724
>B9RNV9_RICCO (tr|B9RNV9) DNA-directed RNA polymerase OS=Ricinus communis
GN=RCOM_0920920 PE=3 SV=1
Length = 1203
Score = 325 bits (833), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 168/229 (73%), Positives = 181/229 (79%), Gaps = 4/229 (1%)
Query: 7 DSRF---STQGRLEMLDTH-GENCGLVKNLAITGLVSTEILEPLIDILFDCGMDKLVDDT 62
D+RF S GR+ L T GENCGLVKNLA TGLVS ILEPLID L GM+K+ +D+
Sbjct: 528 DARFPHPSHWGRVCFLSTPDGENCGLVKNLATTGLVSVNILEPLIDKLIARGMEKVPEDS 587
Query: 63 HTKLDEKYKVFLNGEWVGVCEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADA 122
H+ LDEK KVFLNGEWVGVCEDS LFVAE QVEIKRDEQQ+EVRIF+DA
Sbjct: 588 HSDLDEKDKVFLNGEWVGVCEDSRLFVAELRRLRRRKKLPQQVEIKRDEQQQEVRIFSDA 647
Query: 123 GRILRPLLVVENLHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVD 182
GRILRPLLVV+NLHKI+AFKGGN TFQSLLDK DCSTAWGIKFL++GVD
Sbjct: 648 GRILRPLLVVQNLHKIEAFKGGNCTFQSLLDKGIIEFVGTEEEEDCSTAWGIKFLLSGVD 707
Query: 183 KKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
KQ LKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG
Sbjct: 708 GKQSLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 756
>D7SV38_VITVI (tr|D7SV38) Whole genome shotgun sequence of line PN40024,
scaffold_8.assembly12x (Fragment) OS=Vitis vinifera
GN=VIT_00035963001 PE=4 SV=1
Length = 1220
Score = 306 bits (785), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 157/229 (68%), Positives = 177/229 (77%), Gaps = 5/229 (2%)
Query: 7 DSRF---STQGRLEMLDTH-GENCGLVKNLAITGLVSTEILEPLIDILFDCGMDKLVDDT 62
D+R+ S G++ L T GENCGLVKNLAITGLVSTE+L+PL+D LFDCGM+KLVDDT
Sbjct: 560 DARYPHPSHWGKVCFLSTPDGENCGLVKNLAITGLVSTEVLDPLVDKLFDCGMEKLVDDT 619
Query: 63 HTKLDEKYKVFLNGEWVGVCEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADA 122
TKL K KVFL+G+WVGVCED FV E QVEIKRDEQQ EVRIF+DA
Sbjct: 620 STKLSGKNKVFLDGDWVGVCEDPISFVVELRTKRRHKELPQQVEIKRDEQQGEVRIFSDA 679
Query: 123 GRILRPLLVVENLHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVD 182
GRILRPLLVVENL K+K FKG ++TFQSLLDK DCSTAWGIK+L+ G D
Sbjct: 680 GRILRPLLVVENLKKVKTFKGDDFTFQSLLDKGIVELIGAEEEEDCSTAWGIKYLLKGHD 739
Query: 183 KKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
P+KYTHCELDMSFLLGLSCGIIP+ANHDHARRVLYQ++KHSQQAIG
Sbjct: 740 DP-PVKYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIG 787
>Q1L6V6_SOLLC (tr|Q1L6V6) DNA-directed RNA polymerase (Fragment) OS=Solanum
lycopersicum GN=RPD2 PE=2 SV=1
Length = 1123
Score = 281 bits (718), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 144/229 (62%), Positives = 164/229 (71%), Gaps = 4/229 (1%)
Query: 7 DSRF---STQGRLEMLDTH-GENCGLVKNLAITGLVSTEILEPLIDILFDCGMDKLVDDT 62
D+R+ S G+L L T GENCGLVKNLA GLVST IL+P ++ LF CGM KLVDD
Sbjct: 537 DARYPHPSHWGKLCFLSTPDGENCGLVKNLASMGLVSTIILKPFLETLFRCGMQKLVDDC 596
Query: 63 HTKLDEKYKVFLNGEWVGVCEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADA 122
T L K KV L+GEWVGVCEDS LFV++ QVE+KRDE Q EVRIF+D
Sbjct: 597 STSLHGKQKVLLDGEWVGVCEDSALFVSKLRRKRRRNEVPHQVEVKRDELQGEVRIFSDP 656
Query: 123 GRILRPLLVVENLHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVD 182
GRILRPLLVV NL KIKA KGG+Y FQSLLD DC TAWG+++++
Sbjct: 657 GRILRPLLVVSNLKKIKALKGGDYGFQSLLDNGIIELIGPEEEEDCRTAWGVEYILKADK 716
Query: 183 KKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
+ P KYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQ++KHSQQAIG
Sbjct: 717 ENPPAKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIG 765
>Q1L6W5_RHOMC (tr|Q1L6W5) DNA-directed RNA polymerase (Fragment) OS=Rhododendron
macrophyllum GN=RPD2 PE=2 SV=1
Length = 1019
Score = 276 bits (707), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 146/229 (63%), Positives = 164/229 (71%), Gaps = 4/229 (1%)
Query: 7 DSRF---STQGRLEMLDTH-GENCGLVKNLAITGLVSTEILEPLIDILFDCGMDKLVDDT 62
D+R+ S G++ L T GENCGLVKNLAITGLVST I E +D L D GM+KLVDDT
Sbjct: 344 DARYPHPSHWGKICFLSTPDGENCGLVKNLAITGLVSTNIEEHFLDKLLDSGMEKLVDDT 403
Query: 63 HTKLDEKYKVFLNGEWVGVCEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADA 122
T L K KVFL+G WVGVC DS FVA QVEIKRDEQ +EVR+F+DA
Sbjct: 404 STLLSGKVKVFLDGNWVGVCGDSVSFVAALRRKRRRKEVPHQVEIKRDEQHREVRVFSDA 463
Query: 123 GRILRPLLVVENLHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVD 182
GRILRPLLVVENL KIKA KGG+Y+FQSLLDK DC TAWGI +L +
Sbjct: 464 GRILRPLLVVENLGKIKASKGGDYSFQSLLDKGVIEFIGTEEEEDCRTAWGINYLFMENE 523
Query: 183 KKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
K +KYTHCELDMSFLLGLS IIPFANHDHARRVLYQ++KHSQQA+G
Sbjct: 524 AKATVKYTHCELDMSFLLGLSAAIIPFANHDHARRVLYQSEKHSQQAMG 572
>Q17U53_SOLBU (tr|Q17U53) DNA-directed RNA polymerase, putative OS=Solanum
bulbocastanum GN=SBB1_14t00022 PE=3 SV=1
Length = 1018
Score = 263 bits (672), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 141/260 (54%), Positives = 168/260 (64%), Gaps = 35/260 (13%)
Query: 7 DSRF---STQGRLEMLDTH-GENCGLVKNLAITGLVSTEILEPLIDILFDCGMDKLVDDT 62
D+R+ S G++ L T GENCGLVKNLA GLVST +L+PL++ LF CGM KLVDD+
Sbjct: 543 DARYPHPSHWGKVCFLSTPDGENCGLVKNLASMGLVSTTVLKPLLETLFRCGMQKLVDDS 602
Query: 63 HTKLDEKYKVFLNGEWVGVCEDSNLFVAEXXXXXXX------------------------ 98
T L K KV L+G+WVGVCEDS LFV++
Sbjct: 603 ATSLHGKQKVLLDGDWVGVCEDSALFVSKLRRQRRRNEVPHQLAHTLAIPPGICYLLPTH 662
Query: 99 ---XXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVENLHKIKAF----KGGNYTFQSL 151
QVE+KRDEQQ EVRIF+DAGRI+RPLLVV NL IKA KGG+Y FQ+L
Sbjct: 663 VPVTLTEAQVEVKRDEQQDEVRIFSDAGRIMRPLLVVSNLKNIKALKDGMKGGDYGFQTL 722
Query: 152 LDKXXXXXXXXXXXXDCSTAWGIKFLVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFAN 211
LDK DC TAWG+++L+ + P+ YTHCELDMSFLLGLSCG+IPFAN
Sbjct: 723 LDKGIIELIGPEEEEDCRTAWGVEYLLKADKENPPVNYTHCELDMSFLLGLSCGLIPFAN 782
Query: 212 HDHARRVLYQAQKHSQQAIG 231
HDHARRVLYQ++KHSQQAIG
Sbjct: 783 HDHARRVLYQSEKHSQQAIG 802
>Q1L6W3_ANTMA (tr|Q1L6W3) DNA-directed RNA polymerase (Fragment) OS=Antirrhinum
majus GN=RPD2 PE=2 SV=1
Length = 821
Score = 257 bits (656), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 139/232 (59%), Positives = 166/232 (71%), Gaps = 9/232 (3%)
Query: 7 DSRF---STQGRLEMLDTH-GENCGLVKNLAITGLVSTEILE--PLIDILFDCGMDKLVD 60
D+R+ S G++ L T GENCGLVKNLA GLVST +LE L+ CGM+KLVD
Sbjct: 145 DARYPHPSHWGKICFLSTPDGENCGLVKNLASMGLVSTNVLEQESLLRQFHVCGMEKLVD 204
Query: 61 DTHTKLDEKYKVFLNGEWVGVCEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFA 120
DT + L+ K+K FL+GEWVG+C+DS FVA+ QVEIKRD + +EVRIFA
Sbjct: 205 DTSSVLEGKHKAFLDGEWVGMCKDSKSFVAKLRRKRRMMEMPYQVEIKRDVRHREVRIFA 264
Query: 121 DAGRILRPLLVVENLHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAG 180
DAGRILRPLL+V+ L KIK KG ++FQSLLD DC TAWGIK+L +
Sbjct: 265 DAGRILRPLLLVQKLKKIKELKG-EFSFQSLLDNGIVEFIGAEEEEDCRTAWGIKYLFS- 322
Query: 181 VDKKQPL-KYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
DK++PL KYTHCELD SFLLGLSCG+IPFANHDHARRVLYQ++KHSQQAIG
Sbjct: 323 ADKEKPLVKYTHCELDCSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIG 374
>D7L7Z5_ARALY (tr|D7L7Z5) NRPD2a OS=Arabidopsis lyrata subsp. lyrata
GN=ARALYDRAFT_898162 PE=4 SV=1
Length = 1169
Score = 255 bits (651), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 128/229 (55%), Positives = 162/229 (70%), Gaps = 9/229 (3%)
Query: 7 DSRF---STQGRLEMLDTH-GENCGLVKNLAITGLVSTEILEPLIDILFDCGMDKLVDDT 62
D+R+ S GR+ L T GENCGLVKN+++ GLVST++LE ++++L+ CGM++L+DDT
Sbjct: 501 DARYPHPSHWGRVCFLSTPDGENCGLVKNMSLLGLVSTQVLESVVEMLYACGMEELMDDT 560
Query: 63 HTKLDEKYKVFLNGEWVGVCEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADA 122
T L K+KV LNG+WVG+C DS FVAE ++EIKRD+ EVRIF DA
Sbjct: 561 STPLCGKHKVLLNGDWVGLCADSESFVAELKSRRRQSELPREMEIKRDKDDNEVRIFTDA 620
Query: 123 GRILRPLLVVENLHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVD 182
GR+LRPLLVVENLHK+K K Y F+ LLD+ DC+TAWGIK L+
Sbjct: 621 GRLLRPLLVVENLHKLKQDKPTQYPFKHLLDQGILELIGIEEEEDCNTAWGIKQLL---- 676
Query: 183 KKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
K+P YTHCELD+SFLLG+SC I+PFANHDH +RVLYQ+QKH QQAIG
Sbjct: 677 -KEPKNYTHCELDLSFLLGVSCAIVPFANHDHGKRVLYQSQKHCQQAIG 724
>Q9LV32_ARATH (tr|Q9LV32) DNA-directed RNA polymerase OS=Arabidopsis thaliana
GN=At3g18090 PE=3 SV=1
Length = 1119
Score = 249 bits (637), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 124/219 (56%), Positives = 155/219 (70%), Gaps = 6/219 (2%)
Query: 14 GRLEMLDTH-GENCGLVKNLAITGLVSTEILEPLIDILFDCGMDKLVDDTHTKLDEKYKV 72
GR+ L T GENCGLVKN+++ GLVST+ LE ++++LF CGM++L++DT T L K+KV
Sbjct: 461 GRVCFLSTPDGENCGLVKNMSLLGLVSTQGLESVVEMLFTCGMEELMNDTSTPLCGKHKV 520
Query: 73 FLNGEWVGVCEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVV 132
LNG+WVG+C DS FV E ++EIKRD+ EVRIF DAGR+LRPLLVV
Sbjct: 521 LLNGDWVGLCADSESFVGELKSRRRQSELPLEMEIKRDKDDNEVRIFTDAGRLLRPLLVV 580
Query: 133 ENLHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVDKKQPLKYTHC 192
ENLHK+K K Y F+ LLD+ DC+TAWGIK L+ K+P YTHC
Sbjct: 581 ENLHKLKQDKPTQYPFKHLLDQGILELIGIEEEEDCTTAWGIKQLL-----KEPKNYTHC 635
Query: 193 ELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
ELD+SFLLG+SC I+PFANHDH +RVLYQ+QKH QQAIG
Sbjct: 636 ELDLSFLLGVSCAIVPFANHDHGKRVLYQSQKHCQQAIG 674
>Q9LK40_ARATH (tr|Q9LK40) DNA-directed RNA polymerase OS=Arabidopsis thaliana
GN=NRPD2a PE=2 SV=1
Length = 1172
Score = 247 bits (631), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 128/229 (55%), Positives = 157/229 (68%), Gaps = 9/229 (3%)
Query: 7 DSRF---STQGRLEMLDTH-GENCGLVKNLAITGLVSTEILEPLIDILFDCGMDKLVDDT 62
D+R+ S GR+ L T GENCGLVKN+++ GLVST+ LE +++ LF CGM++L+DDT
Sbjct: 505 DARYPHPSHWGRVCFLSTPDGENCGLVKNMSLLGLVSTQSLESVVEKLFACGMEELMDDT 564
Query: 63 HTKLDEKYKVFLNGEWVGVCEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADA 122
T L K+KV LNG+WVG+C DS FVAE ++EIKRD+ EVRIF DA
Sbjct: 565 CTPLFGKHKVLLNGDWVGLCADSESFVAELKSRRRQSELPREMEIKRDKDDNEVRIFTDA 624
Query: 123 GRILRPLLVVENLHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVD 182
GR+LRPLLVVENL K+K K Y F LLD DC+TAWGIK L+
Sbjct: 625 GRLLRPLLVVENLQKLKQEKPSQYPFDHLLDHGILELIGIEEEEDCNTAWGIKQLL---- 680
Query: 183 KKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
K+P YTHCELD+SFLLG+SC ++PFANHDH RRVLYQ+QKH QQAIG
Sbjct: 681 -KEPKIYTHCELDLSFLLGVSCAVVPFANHDHGRRVLYQSQKHCQQAIG 728
>C5WRS0_SORBI (tr|C5WRS0) DNA-directed RNA polymerase OS=Sorghum bicolor
GN=Sb01g042100 PE=3 SV=1
Length = 1228
Score = 228 bits (580), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 120/229 (52%), Positives = 148/229 (64%), Gaps = 6/229 (2%)
Query: 7 DSRF---STQGRLEMLDTH-GENCGLVKNLAITGLVSTEILEPLIDILFDCGMDKLVDDT 62
D+R+ S G+L + T GENCGLVKNLA+T +VS+ +++PLI+ CGM KL D
Sbjct: 555 DARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTAIVSSRVVQPLIESFISCGMSKLNDIP 614
Query: 63 HTKLDEKYKVFLNGEWVGVCEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADA 122
+ K+FLNG WVG C+DS FV QVEIKRD+ KEVR+F+DA
Sbjct: 615 TEHIQRMDKIFLNGNWVGSCKDSASFVFRLRCMRRSSLIDPQVEIKRDKHHKEVRVFSDA 674
Query: 123 GRILRPLLVVENLHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVD 182
GRILRPLLVVENL KI+ KG +++FQ L+ + D AWGI+ L
Sbjct: 675 GRILRPLLVVENLKKIRKPKGRSFSFQELMQQEIIEFIGVEEEEDIQCAWGIRHLFES-- 732
Query: 183 KKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
+ YTHCELD SFLLGLSCGIIPFANH+ ARRVLYQ++KHSQQAIG
Sbjct: 733 EGAISSYTHCELDPSFLLGLSCGIIPFANHNFARRVLYQSEKHSQQAIG 781
>C5Y8Y9_SORBI (tr|C5Y8Y9) DNA-directed RNA polymerase OS=Sorghum bicolor
GN=Sb06g030300 PE=3 SV=1
Length = 1239
Score = 227 bits (578), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 120/229 (52%), Positives = 148/229 (64%), Gaps = 6/229 (2%)
Query: 7 DSRF---STQGRLEMLDTH-GENCGLVKNLAITGLVSTEILEPLIDILFDCGMDKLVDDT 62
D+R+ S G+L L T GENCGLVKNLA+T +VS+ + +PLI+ CGM KL D
Sbjct: 566 DARYPNPSYWGKLCFLSTPDGENCGLVKNLAVTAIVSSRVGQPLIESFISCGMSKLNDIP 625
Query: 63 HTKLDEKYKVFLNGEWVGVCEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADA 122
+ K+FLNG WVG C+DS FV QVEIKRD+ KEVR+F+DA
Sbjct: 626 TEHIQRMDKIFLNGNWVGSCKDSASFVFRLRCMRRSSMIDPQVEIKRDKHHKEVRVFSDA 685
Query: 123 GRILRPLLVVENLHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVD 182
GRILRPLLVVENL+KI+ KG +++FQ L+ + D AWGI+ L
Sbjct: 686 GRILRPLLVVENLNKIRKPKGRSFSFQELMQQEIIEFIGVEEEEDIQCAWGIRHLFES-- 743
Query: 183 KKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
+ YTHCELD SFL+GLSCGIIPFANH+ ARRVLYQ++KHSQQAIG
Sbjct: 744 EGAISSYTHCELDPSFLMGLSCGIIPFANHNFARRVLYQSEKHSQQAIG 792
>Q67ZK6_ARATH (tr|Q67ZK6) DNA-directed RNA polymerase OS=Arabidopsis thaliana
GN=At3g23780 PE=2 SV=1
Length = 639
Score = 226 bits (576), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 112/200 (56%), Positives = 138/200 (69%), Gaps = 5/200 (2%)
Query: 32 LAITGLVSTEILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGVCEDSNLFVAE 91
+++ GLVST+ LE +++ LF CGM++L+DDT T L K+KV LNG+WVG+C DS FVAE
Sbjct: 1 MSLLGLVSTQSLESVVEKLFACGMEELMDDTCTPLFGKHKVLLNGDWVGLCADSESFVAE 60
Query: 92 XXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVENLHKIKAFKGGNYTFQSL 151
++EIKRD+ EVRIF DAGR+LRPLLVVENL K+K K Y F L
Sbjct: 61 LKSRRRQSELPREMEIKRDKDDNEVRIFTDAGRLLRPLLVVENLQKLKQEKPSQYPFDHL 120
Query: 152 LDKXXXXXXXXXXXXDCSTAWGIKFLVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFAN 211
LD DC+TAWGIK L+ K+P YTHCELD+SFLLG+SC ++PFAN
Sbjct: 121 LDHGILELIGIEEEEDCNTAWGIKQLL-----KEPKIYTHCELDLSFLLGVSCAVVPFAN 175
Query: 212 HDHARRVLYQAQKHSQQAIG 231
HDH RRVLYQ+QKH QQAIG
Sbjct: 176 HDHGRRVLYQSQKHCQQAIG 195
>Q0J9N2_ORYSJ (tr|Q0J9N2) DNA-directed RNA polymerase (Fragment) OS=Oryza sativa
subsp. japonica GN=Os04g0641000 PE=3 SV=1
Length = 1270
Score = 225 bits (573), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 121/249 (48%), Positives = 153/249 (61%), Gaps = 24/249 (9%)
Query: 7 DSRF---STQGRLEMLDTH-GENCGLVKNLAITGLVSTEILEPLIDILFDCGMDKLVDDT 62
D+R+ S G+L + T GENCGLVKNLA+T VS+ + PLID CGM+KL +
Sbjct: 573 DARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTATVSSRVAPPLIDRFISCGMNKLHEIP 632
Query: 63 HTKLDEKYKVFLNGEWVGVCEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADA 122
++ K+FLNG+WVG C D FV QVEIKRD+ Q+EVR+F+DA
Sbjct: 633 TEEVPRMDKIFLNGDWVGSCSDPASFVLRLRCMRRSGLIDPQVEIKRDKHQREVRVFSDA 692
Query: 123 GRILRPLLVVENLHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVD 182
GRILRPLLVVENL+KI+ KG +Y+FQ L+ + D +AWGI+ L +
Sbjct: 693 GRILRPLLVVENLNKIRRPKGSSYSFQWLMQQEIIEFIGVEEEEDIRSAWGIRNLFESEE 752
Query: 183 KKQPLK--------------------YTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
+ +K YTHCELD+SFLLGLSCGIIPFANH+ ARRVLYQ+
Sbjct: 753 EAPMVKMNKAEDVFNVKRKIGGEVSGYTHCELDLSFLLGLSCGIIPFANHNFARRVLYQS 812
Query: 223 QKHSQQAIG 231
+KHSQQAIG
Sbjct: 813 EKHSQQAIG 821
>Q7XTQ7_ORYSJ (tr|Q7XTQ7) DNA-directed RNA polymerase OS=Oryza sativa subsp.
japonica GN=OSJNBb0079B02.6 PE=3 SV=2
Length = 1343
Score = 225 bits (573), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 121/249 (48%), Positives = 153/249 (61%), Gaps = 24/249 (9%)
Query: 7 DSRF---STQGRLEMLDTH-GENCGLVKNLAITGLVSTEILEPLIDILFDCGMDKLVDDT 62
D+R+ S G+L + T GENCGLVKNLA+T VS+ + PLID CGM+KL +
Sbjct: 646 DARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTATVSSRVAPPLIDRFISCGMNKLHEIP 705
Query: 63 HTKLDEKYKVFLNGEWVGVCEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADA 122
++ K+FLNG+WVG C D FV QVEIKRD+ Q+EVR+F+DA
Sbjct: 706 TEEVPRMDKIFLNGDWVGSCSDPASFVLRLRCMRRSGLIDPQVEIKRDKHQREVRVFSDA 765
Query: 123 GRILRPLLVVENLHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVD 182
GRILRPLLVVENL+KI+ KG +Y+FQ L+ + D +AWGI+ L +
Sbjct: 766 GRILRPLLVVENLNKIRRPKGSSYSFQWLMQQEIIEFIGVEEEEDIRSAWGIRNLFESEE 825
Query: 183 KKQPLK--------------------YTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
+ +K YTHCELD+SFLLGLSCGIIPFANH+ ARRVLYQ+
Sbjct: 826 EAPMVKMNKAEDVFNVKRKIGGEVSGYTHCELDLSFLLGLSCGIIPFANHNFARRVLYQS 885
Query: 223 QKHSQQAIG 231
+KHSQQAIG
Sbjct: 886 EKHSQQAIG 894
>Q07DU9_MAIZE (tr|Q07DU9) DNA-directed RNA polymerase (Fragment) OS=Zea mays
GN=RPD2 PE=2 SV=1
Length = 1170
Score = 225 bits (573), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 118/229 (51%), Positives = 146/229 (63%), Gaps = 6/229 (2%)
Query: 7 DSRF---STQGRLEMLDTH-GENCGLVKNLAITGLVSTEILEPLIDILFDCGMDKLVDDT 62
D+R+ S G+L + T GENCGLVKNLA+T +VS+ +++PLI+ CGM KL D
Sbjct: 497 DARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTAIVSSRVMQPLIESFISCGMSKLNDIP 556
Query: 63 HTKLDEKYKVFLNGEWVGVCEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADA 122
+ K+FLNG WVG CE+S FV QVEIKRD+ EVR+F DA
Sbjct: 557 TEHIQRMDKIFLNGNWVGSCENSASFVFRLRCMRRSSLIDPQVEIKRDKHHNEVRVFTDA 616
Query: 123 GRILRPLLVVENLHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVD 182
GRILRPLLVVENL+KI+ KG +++F L+ + D AWGI+ L
Sbjct: 617 GRILRPLLVVENLNKIRKPKGRSFSFHELMQQEIIEFIGVEEEEDIQCAWGIRHLFE--S 674
Query: 183 KKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
+ YTHCELD SFLLGLSCGIIPFANH+ ARRVLYQ++KHSQQAIG
Sbjct: 675 EGAISSYTHCELDPSFLLGLSCGIIPFANHNFARRVLYQSEKHSQQAIG 723
>Q7F9D6_ORYSJ (tr|Q7F9D6) DNA-directed RNA polymerase OS=Oryza sativa subsp.
japonica GN=OSJNBa0063C18.1 PE=3 SV=1
Length = 1316
Score = 225 bits (573), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 121/249 (48%), Positives = 153/249 (61%), Gaps = 24/249 (9%)
Query: 7 DSRF---STQGRLEMLDTH-GENCGLVKNLAITGLVSTEILEPLIDILFDCGMDKLVDDT 62
D+R+ S G+L + T GENCGLVKNLA+T VS+ + PLID CGM+KL +
Sbjct: 619 DARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTATVSSRVAPPLIDRFISCGMNKLHEIP 678
Query: 63 HTKLDEKYKVFLNGEWVGVCEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADA 122
++ K+FLNG+WVG C D FV QVEIKRD+ Q+EVR+F+DA
Sbjct: 679 TEEVPRMDKIFLNGDWVGSCSDPASFVLRLRCMRRSGLIDPQVEIKRDKHQREVRVFSDA 738
Query: 123 GRILRPLLVVENLHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVD 182
GRILRPLLVVENL+KI+ KG +Y+FQ L+ + D +AWGI+ L +
Sbjct: 739 GRILRPLLVVENLNKIRRPKGSSYSFQWLMQQEIIEFIGVEEEEDIRSAWGIRNLFESEE 798
Query: 183 KKQPLK--------------------YTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
+ +K YTHCELD+SFLLGLSCGIIPFANH+ ARRVLYQ+
Sbjct: 799 EAPMVKMNKAEDVFNVKRKIGGEVSGYTHCELDLSFLLGLSCGIIPFANHNFARRVLYQS 858
Query: 223 QKHSQQAIG 231
+KHSQQAIG
Sbjct: 859 EKHSQQAIG 867
>D2WKH8_MAIZE (tr|D2WKH8) DNA-directed RNA polymerase OS=Zea mays PE=2 SV=1
Length = 1229
Score = 225 bits (573), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 118/229 (51%), Positives = 146/229 (63%), Gaps = 6/229 (2%)
Query: 7 DSRF---STQGRLEMLDTH-GENCGLVKNLAITGLVSTEILEPLIDILFDCGMDKLVDDT 62
D+R+ S G+L + T GENCGLVKNLA+T +VS+ +++PLI+ CGM KL D
Sbjct: 556 DARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTAIVSSRVMQPLIESFISCGMSKLNDIP 615
Query: 63 HTKLDEKYKVFLNGEWVGVCEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADA 122
+ K+FLNG WVG CE+S FV QVEIKRD+ EVR+F DA
Sbjct: 616 TEHIQRMDKIFLNGNWVGSCENSASFVFRLRCMRRSSLIDPQVEIKRDKHHNEVRVFTDA 675
Query: 123 GRILRPLLVVENLHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVD 182
GRILRPLLVVENL+KI+ KG +++F L+ + D AWGI+ L
Sbjct: 676 GRILRPLLVVENLNKIRKPKGRSFSFHELMQQEIIEFIGVEEEEDIQCAWGIRHLFES-- 733
Query: 183 KKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
+ YTHCELD SFLLGLSCGIIPFANH+ ARRVLYQ++KHSQQAIG
Sbjct: 734 EGAISSYTHCELDPSFLLGLSCGIIPFANHNFARRVLYQSEKHSQQAIG 782
>D2WKI1_MAIZE (tr|D2WKI1) DNA-directed RNA polymerase OS=Zea mays PE=2 SV=1
Length = 1094
Score = 225 bits (573), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 118/229 (51%), Positives = 146/229 (63%), Gaps = 6/229 (2%)
Query: 7 DSRF---STQGRLEMLDTH-GENCGLVKNLAITGLVSTEILEPLIDILFDCGMDKLVDDT 62
D+R+ S G+L + T GENCGLVKNLA+T +VS+ +++PLI+ CGM KL D
Sbjct: 556 DARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTAIVSSRVMQPLIESFISCGMSKLNDIP 615
Query: 63 HTKLDEKYKVFLNGEWVGVCEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADA 122
+ K+FLNG WVG CE+S FV QVEIKRD+ EVR+F DA
Sbjct: 616 TEHIQRMDKIFLNGNWVGSCENSASFVFRLRCMRRSSLIDPQVEIKRDKHHNEVRVFTDA 675
Query: 123 GRILRPLLVVENLHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVD 182
GRILRPLLVVENL+KI+ KG +++F L+ + D AWGI+ L
Sbjct: 676 GRILRPLLVVENLNKIRKPKGRSFSFHELMQQEIIEFIGVEEEEDIQCAWGIRHLFES-- 733
Query: 183 KKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
+ YTHCELD SFLLGLSCGIIPFANH+ ARRVLYQ++KHSQQAIG
Sbjct: 734 EGAISSYTHCELDPSFLLGLSCGIIPFANHNFARRVLYQSEKHSQQAIG 782
>D2WKI0_MAIZE (tr|D2WKI0) DNA-directed RNA polymerase OS=Zea mays PE=2 SV=1
Length = 1229
Score = 225 bits (573), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 116/229 (50%), Positives = 142/229 (62%), Gaps = 6/229 (2%)
Query: 7 DSRFSTQGRLE----MLDTHGENCGLVKNLAITGLVSTEILEPLIDILFDCGMDKLVDDT 62
D+R+ E M GENCGLVKNLA+T +VS+ +++PLI+ CGM KL D
Sbjct: 556 DARYPNPSYWEKLCFMSTPDGENCGLVKNLAVTAIVSSRVMQPLIESFISCGMSKLNDIP 615
Query: 63 HTKLDEKYKVFLNGEWVGVCEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADA 122
+ K+FLNG WVG CE+S FV QVEIKRD+ EVR+F DA
Sbjct: 616 TEHIQRMDKIFLNGNWVGSCENSASFVFRLRCMRRSSLIDPQVEIKRDKHHNEVRVFTDA 675
Query: 123 GRILRPLLVVENLHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVD 182
GRILRPLLVVENL+KI+ KG +++F L+ + D AWGI+ L
Sbjct: 676 GRILRPLLVVENLNKIRKPKGRSFSFHELMQQEIIEFIGVEEEEDIQCAWGIRHLFES-- 733
Query: 183 KKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
+ YTHCELD SFLLGLSCGIIPFANH+ ARRVLYQ++KHSQQAIG
Sbjct: 734 EGAISSYTHCELDPSFLLGLSCGIIPFANHNFARRVLYQSEKHSQQAIG 782
>D2D1U0_9CARY (tr|D2D1U0) DNA-directed RNA polymerase (Fragment) OS=Heliosperma
macranthum GN=RPD2b PE=3 SV=1
Length = 479
Score = 223 bits (568), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 112/188 (59%), Positives = 131/188 (69%)
Query: 44 EPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGVCEDSNLFVAEXXXXXXXXXXXX 103
E L+ + +CGM+ LVDDT + L K KV ++GEWVG+C +S+ FV E
Sbjct: 7 ERLLKKMVNCGMETLVDDTCSSLTGKAKVLMDGEWVGICGNSSTFVEELRRQRRRNQFLN 66
Query: 104 QVEIKRDEQQKEVRIFADAGRILRPLLVVENLHKIKAFKGGNYTFQSLLDKXXXXXXXXX 163
QVEIK+D Q EVRIF DAGRILRPLLVVENL KIK KG +++FQ+LLDK
Sbjct: 67 QVEIKQDVQNTEVRIFCDAGRILRPLLVVENLRKIKLLKGDDFSFQTLLDKGILELIGVE 126
Query: 164 XXXDCSTAWGIKFLVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQ 223
DC TAW IK+L G K KYTHCELDMSFLLG+SCGIIPFANHDHARRVLYQ++
Sbjct: 127 EEEDCCTAWEIKYLFVGDKGKGLEKYTHCELDMSFLLGVSCGIIPFANHDHARRVLYQSE 186
Query: 224 KHSQQAIG 231
KHS QAIG
Sbjct: 187 KHSGQAIG 194
>D2D1U1_9CARY (tr|D2D1U1) DNA-directed RNA polymerase (Fragment) OS=Heliosperma
macranthum GN=RPD2b PE=3 SV=1
Length = 479
Score = 223 bits (568), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 112/188 (59%), Positives = 131/188 (69%)
Query: 44 EPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGVCEDSNLFVAEXXXXXXXXXXXX 103
E L+ + +CGM+ LVDDT + L K KV ++GEWVG+C +S+ FV E
Sbjct: 7 ERLLKKMVNCGMETLVDDTCSSLTGKAKVLMDGEWVGICGNSSTFVEELRRQRRRNQFLN 66
Query: 104 QVEIKRDEQQKEVRIFADAGRILRPLLVVENLHKIKAFKGGNYTFQSLLDKXXXXXXXXX 163
QVEIK+D Q EVRIF DAGRILRPLLVVENL KIK KG +++FQ+LLDK
Sbjct: 67 QVEIKQDVQNTEVRIFCDAGRILRPLLVVENLRKIKLLKGDDFSFQTLLDKGILELIGVE 126
Query: 164 XXXDCSTAWGIKFLVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQ 223
DC TAW IK+L G K KYTHCELDMSFLLG+SCGIIPFANHDHARRVLYQ++
Sbjct: 127 EEEDCCTAWEIKYLFVGDKGKGLEKYTHCELDMSFLLGVSCGIIPFANHDHARRVLYQSE 186
Query: 224 KHSQQAIG 231
KHS QAIG
Sbjct: 187 KHSGQAIG 194
>Q259Y6_ORYSA (tr|Q259Y6) DNA-directed RNA polymerase OS=Oryza sativa
GN=B0414F07.4 PE=3 SV=1
Length = 1343
Score = 222 bits (565), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 120/249 (48%), Positives = 152/249 (61%), Gaps = 24/249 (9%)
Query: 7 DSRF---STQGRLEMLDTH-GENCGLVKNLAITGLVSTEILEPLIDILFDCGMDKLVDDT 62
D+R+ S G+L + T GENCGLVKNLA+T VS+ + PLID CGM+KL +
Sbjct: 646 DARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTATVSSRVAPPLIDRFISCGMNKLHEIP 705
Query: 63 HTKLDEKYKVFLNGEWVGVCEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADA 122
++ K+FLNG+WVG C D FV QVEIK D+ Q+EVR+F+DA
Sbjct: 706 TEEVPRMDKIFLNGDWVGSCSDPASFVLRLRCMRRSGLIDPQVEIKWDKHQREVRVFSDA 765
Query: 123 GRILRPLLVVENLHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVD 182
GRILRPLLVVENL+KI+ KG +Y+FQ L+ + D +AWGI+ L +
Sbjct: 766 GRILRPLLVVENLNKIRRPKGSSYSFQWLMQQEIIEFIGVEEEEDIRSAWGIRNLFESEE 825
Query: 183 KKQPLK--------------------YTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
+ +K YTHCELD+SFLLGLSCGIIPFANH+ ARRVLYQ+
Sbjct: 826 EAPMVKMNKAEDVFNVKRKIGGEVSGYTHCELDLSFLLGLSCGIIPFANHNFARRVLYQS 885
Query: 223 QKHSQQAIG 231
+KHSQQAIG
Sbjct: 886 EKHSQQAIG 894
>D2D1S3_9CARY (tr|D2D1S3) DNA-directed RNA polymerase (Fragment) OS=Heliosperma
macranthum GN=RPD2a PE=3 SV=1
Length = 475
Score = 221 bits (564), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 110/182 (60%), Positives = 127/182 (69%)
Query: 50 LFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGVCEDSNLFVAEXXXXXXXXXXXXQVEIKR 109
+ +CGM+ LVDDT T L+ K KV ++GEW G+C +S+ FV E QVEIK+
Sbjct: 13 MVNCGMETLVDDTCTSLNGKAKVLIDGEWAGICGNSSTFVEELRRQRRRNQFLNQVEIKQ 72
Query: 110 DEQQKEVRIFADAGRILRPLLVVENLHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCS 169
D Q EVRIF DAGRILRPLLVVENL KIK KG ++FQ+LLDK DC
Sbjct: 73 DIQNAEVRIFCDAGRILRPLLVVENLRKIKLLKGDEFSFQTLLDKGILELIGVEEEEDCR 132
Query: 170 TAWGIKFLVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQA 229
TAW IK+L G K KYTHCELDMSFLLG+SCGIIPFANHDHARRVLYQ++KHS QA
Sbjct: 133 TAWEIKYLFTGEKGKGLEKYTHCELDMSFLLGVSCGIIPFANHDHARRVLYQSEKHSGQA 192
Query: 230 IG 231
IG
Sbjct: 193 IG 194
>D2D1U3_9CARY (tr|D2D1U3) DNA-directed RNA polymerase (Fragment) OS=Heliosperma
veselskyi subsp. veselskyi GN=RPD2b PE=3 SV=1
Length = 474
Score = 221 bits (564), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 113/188 (60%), Positives = 131/188 (69%)
Query: 44 EPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGVCEDSNLFVAEXXXXXXXXXXXX 103
E L+ + +CGM+ LVDDT + L K KV ++GEWVG+C +S+ FV E
Sbjct: 7 ERLLKKMVNCGMETLVDDTCSSLTGKAKVLMDGEWVGICGNSSTFVEELRRQRRRNQLLN 66
Query: 104 QVEIKRDEQQKEVRIFADAGRILRPLLVVENLHKIKAFKGGNYTFQSLLDKXXXXXXXXX 163
QVEIK+D Q EVRIF DAGRILRPLLVVENL KIK KG +Y+FQ+LLDK
Sbjct: 67 QVEIKQDVQNTEVRIFCDAGRILRPLLVVENLRKIKLLKGDDYSFQTLLDKGILELIGVE 126
Query: 164 XXXDCSTAWGIKFLVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQ 223
DC TAW IK+L G K KYTHCELDMSFLLG+SCGIIPFANHDHARRVLYQ++
Sbjct: 127 EEEDCCTAWEIKYLFMGDKGKGLEKYTHCELDMSFLLGVSCGIIPFANHDHARRVLYQSE 186
Query: 224 KHSQQAIG 231
KHS QAIG
Sbjct: 187 KHSGQAIG 194
>D2D1S5_9CARY (tr|D2D1S5) DNA-directed RNA polymerase (Fragment) OS=Heliosperma
veselskyi subsp. veselskyi GN=RPD2a PE=3 SV=1
Length = 475
Score = 220 bits (561), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 109/182 (59%), Positives = 127/182 (69%)
Query: 50 LFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGVCEDSNLFVAEXXXXXXXXXXXXQVEIKR 109
+ +CGM+ LVDDT T L+ K KV ++GEW G+C +S+ FV E QVEIK+
Sbjct: 13 MVNCGMETLVDDTCTSLNGKAKVLIDGEWAGICGNSSTFVEELRRQRRRNQFLNQVEIKQ 72
Query: 110 DEQQKEVRIFADAGRILRPLLVVENLHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCS 169
D Q EVRIF DAGRILRPLLVVENL KIK KG ++FQ+LLDK DC
Sbjct: 73 DVQNAEVRIFCDAGRILRPLLVVENLRKIKLLKGDEFSFQTLLDKGILELIGVEEEEDCR 132
Query: 170 TAWGIKFLVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQA 229
TAW IK+L G K KYTHCELD+SFLLG+SCGIIPFANHDHARRVLYQ++KHS QA
Sbjct: 133 TAWEIKYLFTGEKGKGLEKYTHCELDLSFLLGVSCGIIPFANHDHARRVLYQSEKHSGQA 192
Query: 230 IG 231
IG
Sbjct: 193 IG 194
>D2D1S4_9CARY (tr|D2D1S4) DNA-directed RNA polymerase (Fragment) OS=Heliosperma
pusillum GN=RPD2a PE=3 SV=1
Length = 475
Score = 220 bits (560), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 109/182 (59%), Positives = 127/182 (69%)
Query: 50 LFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGVCEDSNLFVAEXXXXXXXXXXXXQVEIKR 109
+ +CGM+ LVDDT T L+ K KV ++GEW G+C +S+ FV E QVEIK+
Sbjct: 13 MVNCGMETLVDDTCTSLNGKAKVLIDGEWAGICGNSSTFVEELRRQRRRNQFLNQVEIKQ 72
Query: 110 DEQQKEVRIFADAGRILRPLLVVENLHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCS 169
D Q EVRIF DAGRILRPLLVVENL KIK KG ++FQ+LLDK DC
Sbjct: 73 DVQNAEVRIFCDAGRILRPLLVVENLRKIKLLKGDEFSFQTLLDKGILELIGVEEEEDCR 132
Query: 170 TAWGIKFLVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQA 229
TAW IK+L G K KYTHCELD+SFLLG+SCGIIPFANHDHARRVLYQ++KHS QA
Sbjct: 133 TAWEIKYLFTGDKGKGLEKYTHCELDLSFLLGVSCGIIPFANHDHARRVLYQSEKHSGQA 192
Query: 230 IG 231
IG
Sbjct: 193 IG 194
>Q6YYK5_ORYSJ (tr|Q6YYK5) DNA-directed RNA polymerase OS=Oryza sativa subsp.
japonica GN=OJ1590_E05.24 PE=3 SV=1
Length = 1136
Score = 214 bits (546), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 120/229 (52%), Positives = 144/229 (62%), Gaps = 4/229 (1%)
Query: 7 DSRF---STQGRLEMLDTH-GENCGLVKNLAITGLVSTEILEPLIDILFDCGMDKLVDDT 62
D+R+ S G+L L T GE CG VKNLAIT +VS EP +D L CGM KL +
Sbjct: 458 DARYPNPSYWGKLCFLSTPDGEKCGFVKNLAITAIVSCLAREPSVDALVSCGMKKLDELL 517
Query: 63 HTKLDEKYKVFLNGEWVGVCEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADA 122
++ K ++FLNG VGVC DS FV QVEIKRD+Q KEVRIF+D
Sbjct: 518 LQEISGKDRIFLNGNLVGVCADSVEFVLHLRSMRRRKQIDAQVEIKRDKQNKEVRIFSDP 577
Query: 123 GRILRPLLVVENLHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVD 182
GRILRPLL+VENL I K G+Y+FQ L+D+ D A+GI+ L AG +
Sbjct: 578 GRILRPLLIVENLRNIMNRKNGSYSFQELMDQNIIELIGVEEEEDIRCAYGIRHLFAGDE 637
Query: 183 KKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
+K YTHCELD SFLLGLSC IIPFANHD A+R+L QA+K SQQAIG
Sbjct: 638 EKNFSFYTHCELDPSFLLGLSCSIIPFANHDTAKRILMQAEKISQQAIG 686
>A3BQ32_ORYSJ (tr|A3BQ32) DNA-directed RNA polymerase OS=Oryza sativa subsp.
japonica GN=OsJ_26208 PE=3 SV=1
Length = 1257
Score = 214 bits (545), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 120/229 (52%), Positives = 144/229 (62%), Gaps = 4/229 (1%)
Query: 7 DSRF---STQGRLEMLDTH-GENCGLVKNLAITGLVSTEILEPLIDILFDCGMDKLVDDT 62
D+R+ S G+L L T GE CG VKNLAIT +VS EP +D L CGM KL +
Sbjct: 579 DARYPNPSYWGKLCFLSTPDGEKCGFVKNLAITAIVSCLAREPSVDALVSCGMKKLDELL 638
Query: 63 HTKLDEKYKVFLNGEWVGVCEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADA 122
++ K ++FLNG VGVC DS FV QVEIKRD+Q KEVRIF+D
Sbjct: 639 LQEISGKDRIFLNGNLVGVCADSVEFVLHLRSMRRRKQIDAQVEIKRDKQNKEVRIFSDP 698
Query: 123 GRILRPLLVVENLHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVD 182
GRILRPLL+VENL I K G+Y+FQ L+D+ D A+GI+ L AG +
Sbjct: 699 GRILRPLLIVENLRNIMNRKNGSYSFQELMDQNIIELIGVEEEEDIRCAYGIRHLFAGDE 758
Query: 183 KKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
+K YTHCELD SFLLGLSC IIPFANHD A+R+L QA+K SQQAIG
Sbjct: 759 EKNFSFYTHCELDPSFLLGLSCSIIPFANHDTAKRILMQAEKISQQAIG 807
>D2D1U2_9CARY (tr|D2D1U2) DNA-directed RNA polymerase (Fragment) OS=Heliosperma
pusillum GN=RPD2b PE=3 SV=1
Length = 443
Score = 200 bits (508), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 101/161 (62%), Positives = 114/161 (70%)
Query: 71 KVFLNGEWVGVCEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLL 130
KV ++GEWVG+C +S+ FV E QVEIK+D Q EVRIF DAGRILRPLL
Sbjct: 2 KVLMDGEWVGICGNSSTFVEELRRQRRRNQLLNQVEIKQDVQNTEVRIFCDAGRILRPLL 61
Query: 131 VVENLHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVDKKQPLKYT 190
VVENL KIK KG +Y+FQ+LLDK DC TAW IK+L G K KYT
Sbjct: 62 VVENLRKIKLLKGDDYSFQTLLDKGILELIGVEEEEDCCTAWEIKYLFMGDKGKGLEKYT 121
Query: 191 HCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
HCELDMSFLLG+SCGIIPFANHDHARRVLYQ++KHS QAIG
Sbjct: 122 HCELDMSFLLGVSCGIIPFANHDHARRVLYQSEKHSGQAIG 162
>A2YRP1_ORYSI (tr|A2YRP1) DNA-directed RNA polymerase OS=Oryza sativa subsp.
indica GN=OsI_27986 PE=3 SV=1
Length = 1347
Score = 188 bits (477), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 100/188 (53%), Positives = 120/188 (63%)
Query: 44 EPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGVCEDSNLFVAEXXXXXXXXXXXX 103
EP +D L CGM KL + ++ K ++FLNG VGVC DS FV
Sbjct: 683 EPSVDALVSCGMKKLDELLLQEISGKDRIFLNGNLVGVCADSVEFVLHLRSMRRRKQIDA 742
Query: 104 QVEIKRDEQQKEVRIFADAGRILRPLLVVENLHKIKAFKGGNYTFQSLLDKXXXXXXXXX 163
QVEIKRD+Q KEVRIF+D GRILRPLL+VENL I K G+Y+FQ L+D+
Sbjct: 743 QVEIKRDKQNKEVRIFSDPGRILRPLLIVENLRNIMNRKNGSYSFQELMDQNIIELIGVE 802
Query: 164 XXXDCSTAWGIKFLVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQ 223
D A+GI+ L AG ++K YTHCELD SFLLGLSC IIPFANHD A+R+L QA+
Sbjct: 803 EEEDIRCAYGIRHLFAGDEEKNFSFYTHCELDPSFLLGLSCSIIPFANHDTAKRILMQAE 862
Query: 224 KHSQQAIG 231
K SQQAIG
Sbjct: 863 KISQQAIG 870
>C5YHJ3_SORBI (tr|C5YHJ3) DNA-directed RNA polymerase OS=Sorghum bicolor
GN=Sb07g004600 PE=3 SV=1
Length = 1251
Score = 188 bits (477), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 111/229 (48%), Positives = 139/229 (60%), Gaps = 4/229 (1%)
Query: 7 DSRF---STQGRLEMLDTH-GENCGLVKNLAITGLVSTEILEPLIDILFDCGMDKLVDDT 62
D+R+ S G+L L T GE CG VKNLA+T +VS+ + +PLID CGM KL D +
Sbjct: 574 DARYPNPSFWGKLCFLSTPDGEKCGFVKNLAVTAVVSSVVRKPLIDTFVSCGMKKLDDIS 633
Query: 63 HTKLDEKYKVFLNGEWVGVCEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADA 122
+ K ++FLNG +GVC D + QVEIKRD+ KEVR+ D
Sbjct: 634 LQDISGKDRIFLNGSLLGVCADPHELTLRLRSLRRSKLIDPQVEIKRDKHHKEVRVLCDP 693
Query: 123 GRILRPLLVVENLHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVD 182
GRILRPLLVVENL +I K G Y+FQ L+D+ D A GI+ L +G
Sbjct: 694 GRILRPLLVVENLRRITRPKDGLYSFQELIDQNIVELIGVEEEEDIQCASGIRHLFSGEK 753
Query: 183 KKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
+ + YTHCELD SFLLGLSC +IPFANHD+ +RVL QA+K SQQAIG
Sbjct: 754 EDRSSGYTHCELDPSFLLGLSCSLIPFANHDNGKRVLMQAEKISQQAIG 802
>Q1L6W2_GINBI (tr|Q1L6W2) DNA-directed RNA polymerase (Fragment) OS=Ginkgo biloba
GN=RPD2 PE=2 SV=1
Length = 651
Score = 176 bits (445), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/216 (43%), Positives = 126/216 (58%), Gaps = 7/216 (3%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
GENCGLVKNLA+TGLVS E P++DIL +CG+ KL + L +F+NGEWVG
Sbjct: 5 GENCGLVKNLAVTGLVSLHSAEDPILDILNECGITKLDQISSFNLKGAANIFINGEWVGA 64
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVENLH----- 136
+D + V + EIKRD++Q E+RIF+DAGRILRPL +V +
Sbjct: 65 YDDPDFLVEKLRDLRRKQRIHPHXEIKRDKKQNEIRIFSDAGRILRPLFIVRDQRLCISQ 124
Query: 137 -KIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVDKKQPLKYTHCELD 195
+I+ FK F+ L+++ D A G+ L + + +THCELD
Sbjct: 125 KQIENFKKRGNPFKYLMERGIIEILGVEEEEDTKIACGVDILRMAENNRSYPSFTHCELD 184
Query: 196 MSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
SFLL LS G IPF+NH+ A R LYQ++KHS+QAIG
Sbjct: 185 PSFLLSLSAGFIPFSNHNLATRTLYQSEKHSKQAIG 220
>B9FCT0_ORYSJ (tr|B9FCT0) DNA-directed RNA polymerase OS=Oryza sativa subsp.
japonica GN=OsJ_16357 PE=3 SV=1
Length = 1185
Score = 155 bits (391), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 84/191 (43%), Positives = 112/191 (58%), Gaps = 4/191 (2%)
Query: 7 DSRF---STQGRLEMLDTH-GENCGLVKNLAITGLVSTEILEPLIDILFDCGMDKLVDDT 62
D+R+ S G+L + T GENCGLVKNLA+T VS+ + PLID CGM+KL +
Sbjct: 555 DARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTATVSSRVAPPLIDRFISCGMNKLHEIP 614
Query: 63 HTKLDEKYKVFLNGEWVGVCEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADA 122
++ K+FLNG+WVG C D FV QVEIKRD+ Q+EVR+F+DA
Sbjct: 615 TEEVPRMDKIFLNGDWVGSCSDPASFVLRLRCMRRSGLIDPQVEIKRDKHQREVRVFSDA 674
Query: 123 GRILRPLLVVENLHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVD 182
GRILRPLLVVENL+KI+ KG +Y+FQ L+ + D +AWGI+ L +
Sbjct: 675 GRILRPLLVVENLNKIRRPKGSSYSFQWLMQQEIIEFIGVEEEEDIRSAWGIRNLFESEE 734
Query: 183 KKQPLKYTHCE 193
+ +K E
Sbjct: 735 EAPMVKMNKAE 745
>B8AV78_ORYSI (tr|B8AV78) DNA-directed RNA polymerase OS=Oryza sativa subsp.
indica GN=OsI_17620 PE=3 SV=1
Length = 1177
Score = 151 bits (382), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 83/191 (43%), Positives = 111/191 (58%), Gaps = 4/191 (2%)
Query: 7 DSRF---STQGRLEMLDTH-GENCGLVKNLAITGLVSTEILEPLIDILFDCGMDKLVDDT 62
D+R+ S G+L + T GENCGLVKNLA+T VS+ + PLID CGM+KL +
Sbjct: 555 DARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTATVSSRVAPPLIDRFISCGMNKLHEIP 614
Query: 63 HTKLDEKYKVFLNGEWVGVCEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADA 122
++ K+FLNG+WVG C D FV QVEIK D+ Q+EVR+F+DA
Sbjct: 615 TEEVPRMDKIFLNGDWVGSCSDPASFVLRLRCMRRSGLIDPQVEIKWDKHQREVRVFSDA 674
Query: 123 GRILRPLLVVENLHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVD 182
GRILRPLLVVENL+KI+ KG +Y+FQ L+ + D +AWGI+ L +
Sbjct: 675 GRILRPLLVVENLNKIRRPKGSSYSFQWLMQQEIIEFIGVEEEEDIRSAWGIRNLFESEE 734
Query: 183 KKQPLKYTHCE 193
+ +K E
Sbjct: 735 EAPMVKMNKAE 745
>A9RJY4_PHYPA (tr|A9RJY4) DNA-directed RNA polymerase OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_104732 PE=3 SV=1
Length = 906
Score = 138 bits (347), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 86/225 (38%), Positives = 117/225 (52%), Gaps = 14/225 (6%)
Query: 21 THGENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWV 79
T G++CGLVKN+++TG++S+ E PL+ IL D GM L + + L + KVFLNG+WV
Sbjct: 254 TDGDDCGLVKNISLTGILSSNTEEEPLMAILLDHGMRYLEEILPSSLADTDKVFLNGKWV 313
Query: 80 GVCEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN----- 134
G ++S V + E+ +D+ KEVRI+ D GRILRPLLVV+N
Sbjct: 314 GTLDNSQDLVNILRAHRRKGAVHEETEVVKDDHLKEVRIYTDGGRILRPLLVVQNQCLVL 373
Query: 135 ----LHKI----KAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVDKKQP 186
L KI K K +Q+LL A G L
Sbjct: 374 SKRHLKKINMDMKTGKTAKECWQALLADGVVEYLGVEEEEGAMVALGSDDLAKARGCDGA 433
Query: 187 LKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
L Y+HCE+D S+L+GL IPF H+ A R L+Q+ KH +QAIG
Sbjct: 434 LVYSHCEIDSSYLMGLGASTIPFLEHNQASRNLFQSDKHCKQAIG 478
>D2D1T0_9CARY (tr|D2D1T0) DNA-directed RNA polymerase (Fragment) OS=Heliosperma
pusillum GN=RPD2a PE=3 SV=1
Length = 380
Score = 130 bits (328), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 63/99 (63%), Positives = 71/99 (71%)
Query: 133 ENLHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVDKKQPLKYTHC 192
ENL KIK KG ++FQ+LLDK DC TAW IK+L G K KYTHC
Sbjct: 1 ENLRKIKLLKGDEFSFQTLLDKGILELIGVEEEEDCRTAWEIKYLFTGEKGKGLEKYTHC 60
Query: 193 ELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
ELD+SFLLG+SCGIIPFANHDHARRVLYQ++KHS QAIG
Sbjct: 61 ELDLSFLLGVSCGIIPFANHDHARRVLYQSEKHSGQAIG 99
>D2D1S9_9CARY (tr|D2D1S9) DNA-directed RNA polymerase (Fragment) OS=Heliosperma
pusillum GN=RPD2a PE=3 SV=1
Length = 380
Score = 130 bits (328), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 63/99 (63%), Positives = 71/99 (71%)
Query: 133 ENLHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVDKKQPLKYTHC 192
ENL KIK KG ++FQ+LLDK DC TAW IK+L G K KYTHC
Sbjct: 1 ENLRKIKLLKGDEFSFQTLLDKGILELIGVEEEEDCRTAWEIKYLFTGEKGKGLEKYTHC 60
Query: 193 ELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
ELD+SFLLG+SCGIIPFANHDHARRVLYQ++KHS QAIG
Sbjct: 61 ELDLSFLLGVSCGIIPFANHDHARRVLYQSEKHSGQAIG 99
>D2D1T1_9CARY (tr|D2D1T1) DNA-directed RNA polymerase (Fragment) OS=Heliosperma
tommasinii GN=RPD2a PE=3 SV=1
Length = 380
Score = 130 bits (328), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 63/99 (63%), Positives = 71/99 (71%)
Query: 133 ENLHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVDKKQPLKYTHC 192
ENL KIK KG ++FQ+LLDK DC TAW IK+L G K KYTHC
Sbjct: 1 ENLRKIKLLKGDEFSFQTLLDKGILELIGVEEEEDCRTAWEIKYLFTGEKGKGLEKYTHC 60
Query: 193 ELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
ELD+SFLLG+SCGIIPFANHDHARRVLYQ++KHS QAIG
Sbjct: 61 ELDLSFLLGVSCGIIPFANHDHARRVLYQSEKHSGQAIG 99
>D2D1S8_9CARY (tr|D2D1S8) DNA-directed RNA polymerase (Fragment) OS=Heliosperma
pusillum GN=RPD2a PE=3 SV=1
Length = 376
Score = 125 bits (313), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 60/95 (63%), Positives = 68/95 (71%)
Query: 137 KIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVDKKQPLKYTHCELDM 196
KIK KG ++FQ+LLDK DC TAW IK+L G K KYTHCELD+
Sbjct: 1 KIKLLKGDEFSFQTLLDKGILELIGVEEEEDCRTAWEIKYLFTGEKGKGLEKYTHCELDL 60
Query: 197 SFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
SFLLG+SCGIIPFANHDHARRVLYQ++KHS QAIG
Sbjct: 61 SFLLGVSCGIIPFANHDHARRVLYQSEKHSGQAIG 95
>A9TK27_PHYPA (tr|A9TK27) DNA-directed RNA polymerase OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_146741 PE=3 SV=1
Length = 1238
Score = 125 bits (313), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 83/240 (34%), Positives = 123/240 (51%), Gaps = 19/240 (7%)
Query: 10 FSTQGRLEMLDTH-GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLD 67
+S GR+ T G CGL+K+LA+T +VS++ E P++ +L DCGM L + T +
Sbjct: 571 YSYWGRICPTQTSDGAECGLIKSLALTCVVSSDTPEEPVLHVLSDCGMHSLEEITPLTIS 630
Query: 68 EKYKVFLNGEWVGVCEDSN---LFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGR 124
K+F+NG WVG+ D N VA ++E+ RD + K V I DAGR
Sbjct: 631 MAEKIFVNGRWVGIFYDYNATLAIVATLRQLRREQLLHGEIEVARDPKTKAVHIHTDAGR 690
Query: 125 ILRPLLVV---------ENLHKIKAF---KGGNYTFQSLLDKXXXXXXXXXXXXDCSTAW 172
+LRPLL+V ++L ++A + + LL++ A
Sbjct: 691 LLRPLLIVKEQKLAMSKQHLKTLRAMSKQESAEACWNFLLEQQVVELLGTEEEEGALIAL 750
Query: 173 GIKFL-VAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
L A D PL YTH E+D+S++ GL +IPF +H+ A R LYQA+KH +QA+G
Sbjct: 751 NRDDLERARKDPDAPL-YTHSEIDVSYIFGLGASVIPFLDHNQASRNLYQAEKHCKQAMG 809
>Q1L6V7_9BRYO (tr|Q1L6V7) DNA-directed RNA polymerase (Fragment) OS=Sphagnum sp.
JL-2005 GN=RPD2 PE=2 SV=1
Length = 650
Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 109/217 (50%), Gaps = 13/217 (5%)
Query: 28 LVKNLAITGLVSTEILEPLID-ILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGVCEDSN 86
LVK+L++TG+VS+++ ++ +L + M+ L + L K KVF+NG WVGV D
Sbjct: 1 LVKHLSLTGIVSSDMPTDMVMCVLSEHSMENLEETNPANLQYKDKVFVNGTWVGVMIDPE 60
Query: 87 LFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN---------LHK 137
V E +VE+ RD ++EV I+ D GRILRPLL+V+N L K
Sbjct: 61 KAVNELREIRRSHHLHSEVEVVRDPVRREVFIYTDGGRILRPLLLVQNQRLVLSRQHLKK 120
Query: 138 IKA---FKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVDKKQPLKYTHCEL 194
+K G + LL + A + L + YTH E+
Sbjct: 121 LKVMMRLHGAGACWTYLLKEGVVELLGIEEEEKVMVATNGQDLEKAREYAHAPVYTHSEI 180
Query: 195 DMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
D SFLLGL +IPF H+ A R L+Q++KH +QAIG
Sbjct: 181 DSSFLLGLGAVMIPFLQHNQALRNLHQSEKHCRQAIG 217
>D2D1T7_9CARY (tr|D2D1T7) DNA-directed RNA polymerase (Fragment) OS=Heliosperma
oliverae GN=RPD2b PE=3 SV=1
Length = 363
Score = 111 bits (277), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 54/82 (65%), Positives = 59/82 (71%)
Query: 150 SLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPF 209
+LLDK DC TAW IK+L G K KYTHCELDMSFLLG+SCGIIPF
Sbjct: 1 TLLDKGILELIGVEEEEDCCTAWEIKYLFMGDKGKGLEKYTHCELDMSFLLGVSCGIIPF 60
Query: 210 ANHDHARRVLYQAQKHSQQAIG 231
ANHDHARRVLYQ++KHS QAIG
Sbjct: 61 ANHDHARRVLYQSEKHSGQAIG 82
>D2D1T8_9CARY (tr|D2D1T8) DNA-directed RNA polymerase (Fragment) OS=Heliosperma
tommasinii GN=RPD2b PE=3 SV=1
Length = 362
Score = 111 bits (277), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 54/82 (65%), Positives = 59/82 (71%)
Query: 150 SLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPF 209
+LLDK DC TAW IK+L G K KYTHCELDMSFLLG+SCGIIPF
Sbjct: 1 TLLDKGILELIGVEEEEDCCTAWEIKYLFMGDKGKGLEKYTHCELDMSFLLGVSCGIIPF 60
Query: 210 ANHDHARRVLYQAQKHSQQAIG 231
ANHDHARRVLYQ++KHS QAIG
Sbjct: 61 ANHDHARRVLYQSEKHSGQAIG 82
>Q98RY5_GUITH (tr|Q98RY5) DNA-directed RNA polymerase OS=Guillardia theta
GN=Pcgf2 PE=3 SV=1
Length = 1206
Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 112/223 (50%), Gaps = 16/223 (7%)
Query: 23 GENCGLVKNLAITGLVSTEILEPL--IDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVG 80
G +CGLVKNLA+T +++ PL I+ L + G++ L + KL +KVF+NG W+G
Sbjct: 541 GHSCGLVKNLALTAMITIGT-SPLFIIEKLENLGLESLEEYNSDKLKSSFKVFVNGCWIG 599
Query: 81 VCEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVV-------- 132
++ +++ ++ I D+ KE++IF+D+GR++RPLL++
Sbjct: 600 THKNPFALISKMKIYRRRNIFSEEISIILDDYDKEIKIFSDSGRVIRPLLIINEENIIKI 659
Query: 133 ----ENLHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVDKKQPLK 188
+ LH + + FQ LL++ C + F Q +K
Sbjct: 660 NNKQKYLHNLTDDQSIYSNFQQLLEEGILEYVDPEEEETCLISMFYNFKYLKNLHTQKIK 719
Query: 189 YTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
YTHCEL S +LG+ +IPF +H+ + R YQA +QAIG
Sbjct: 720 YTHCELHPSVILGVCASLIPFCDHNQSPRNTYQAA-MGKQAIG 761
>B3S2W9_TRIAD (tr|B3S2W9) DNA-directed RNA polymerase OS=Trichoplax adhaerens
GN=TRIADDRAFT_58512 PE=3 SV=1
Length = 1196
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 110/221 (49%), Gaps = 15/221 (6%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ GLVKNLA+ +S P+++ L + M+ L + +H+ L K+F+NG WVG+
Sbjct: 505 GQAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEVSHSALASATKIFVNGCWVGI 564
Query: 82 CEDS-NLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVENL----- 135
D L +V + RD + +E+RI+ DAGRI RPLL+VEN
Sbjct: 565 HRDPEQLMSTLRKLRRQMDVIVSEVSMVRDIRDREIRIYTDAGRICRPLLIVENQKLVLK 624
Query: 136 -HKIKAFKGGN----YTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVDKKQPLKYT 190
+ I++ K + + +Q L+ A +L AGV+ + YT
Sbjct: 625 KNHIESMKTADDYEVFGWQDLIANGIVEYVDTLEEETVMIAMTPDYLTAGVNYCR--TYT 682
Query: 191 HCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
HCE+ S +LG+ IIPF +H+ + R YQ+ +QA+G
Sbjct: 683 HCEIHPSMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMG 722
>C4V8X8_NOSCE (tr|C4V8X8) DNA-directed RNA polymerase OS=Nosema ceranae (strain
BRL01) GN=NCER_100983 PE=3 SV=1
Length = 1143
Score = 104 bits (260), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 111/224 (49%), Gaps = 19/224 (8%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNL++ +S EP+++ L +CG++ L + +H +L KVF+NG WVG+
Sbjct: 489 GQACGLVKNLSLMAYISVGSSSEPIVEFLEECGLESLEEISHLQLQNATKVFVNGVWVGI 548
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVE-------- 133
ED ++ +V I RD ++KE++I +D+GR RPL VV+
Sbjct: 549 HEDPEYLISSLRMLRRTLEIDKEVSIIRDIREKEIKIQSDSGRPCRPLFVVKNNKLCIDE 608
Query: 134 ---NLHKIKAFKGGNYTFQSL---LDKXXXXXXXXXXXXDCSTAWGIKFLVAGVDKKQPL 187
N +IK ++ L LD D + K L A D +
Sbjct: 609 AYSNKEEIKRCTWNDFIENGLIEFLDVEEEEVSMIAMSPDQLNSVK-KDLRASEDLN--I 665
Query: 188 KYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
YTHCE+ + +LG+ +IPF +H+ + R YQ+ +QA+G
Sbjct: 666 NYTHCEIHPATILGICASVIPFPDHNQSPRNTYQS-AMVKQAMG 708
>A8Q7K3_BRUMA (tr|A8Q7K3) DNA-directed RNA polymerase OS=Brugia malayi
GN=Bm1_45495 PE=3 SV=1
Length = 1185
Score = 104 bits (259), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 106/219 (48%), Gaps = 16/219 (7%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ GLVKNLA+ +S + EP+++ L + M+ L + T + + K+F+NG WVG+
Sbjct: 533 GQAVGLVKNLALMAYISVGSLPEPILEFLEEWSMENLEEVAPTAIADATKIFVNGAWVGI 592
Query: 82 CEDS-NLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------ 134
D L +V + RD + +E+RI+ DAGR+ RPLL+VEN
Sbjct: 593 HRDPEQLMTTLKKLRREMDIIVSEVSMVRDIRDREIRIYTDAGRVCRPLLIVENQKLALK 652
Query: 135 LHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAG--VDKKQPLKYTHC 192
I K +YT+ L+ A + L AG D YTHC
Sbjct: 653 RKHIDQLKDNSYTWSELVAGGVVELIDAMEEETVMLAMMPEDLKAGGYCD-----TYTHC 707
Query: 193 ELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
E+ + +LG+ IIPF +H+ + R YQ+ +QA+G
Sbjct: 708 EIHPAMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMG 745
>Q1L6W4_9TRAC (tr|Q1L6W4) DNA-directed RNA polymerase (Fragment) OS=Isoetes sp.
JL-2005 GN=RPD2 PE=2 SV=1
Length = 623
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/226 (33%), Positives = 109/226 (48%), Gaps = 33/226 (14%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
GENCGLVK++A+ +V+ E E P++D L M + L E KVFLNG+WVG+
Sbjct: 5 GENCGLVKSMAVFAIVTLETPEQPILDALLGHMMPP---EAVFPLGELVKVFLNGKWVGI 61
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
+ N Q R KE+ IF+DAGR+LRPL +V+N
Sbjct: 62 TDAENDLEQYVKRKRRGGGLDYQAICLRG---KEINIFSDAGRLLRPLFIVDNDELCITK 118
Query: 135 -----LHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVDKKQP--- 186
L + K G F+ L+ + S A I+ D K+P
Sbjct: 119 EHLFELRRKKPQDG----FEYLVKEGVIEFVGAEEEYRASIAGSIQ------DLKRPRSH 168
Query: 187 -LKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
++YTH EL + LL + +IPF NH+ + RV+ Q++KH +QAIG
Sbjct: 169 HVRYTHMELRPASLLAIGAFVIPFVNHNQSSRVMQQSRKHCRQAIG 214
>Q56NJ1_VERDA (tr|Q56NJ1) DNA-dependent RNA polymerase second largest subunit
(Fragment) OS=Verticillium dahliae GN=rpb2 PE=3 SV=1
Length = 267
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 72/257 (28%), Positives = 112/257 (43%), Gaps = 49/257 (19%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNL++ VS EP+ID + GM+ L + + KVFLNG WVGV
Sbjct: 12 GQACGLVKNLSLMCYVSVGTPAEPIIDYMIQRGMEVLEEYEPLRYPNATKVFLNGVWVGV 71
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVENLHKIKAF 141
+D + V + +V + RD + +E +IF+DAGR++RP+ VVE H
Sbjct: 72 HQDPRVLVPDVQGTRRRNVISHEVSLVRDIRDREFKIFSDAGRVMRPVFVVEQSHHGAVP 131
Query: 142 KGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWG-------IKFLVA--------------- 179
+G + L+++ + W I++L A
Sbjct: 132 QGSLVLQKDLVNEMRDQQENPPDNPEDKITWQTLAHSGIIEYLDAEEEETSMICMTPEDL 191
Query: 180 ------------------GVDKKQPLK-------YTHCELDMSFLLGLSCGIIPFANHDH 214
G +++ K YTHCE+ S +LG+ IIPF +H+
Sbjct: 192 ELYRLRKAGHEVEEDISEGPNRRLRTKIAKTTHMYTHCEIHPSMILGICASIIPFPDHNQ 251
Query: 215 ARRVLYQAQKHSQQAIG 231
+ R YQ+ +QA+G
Sbjct: 252 SPRNTYQSAM-GKQAMG 267
>A7SHD8_NEMVE (tr|A7SHD8) DNA-directed RNA polymerase OS=Nematostella vectensis
GN=v1g189883 PE=3 SV=1
Length = 1182
Score = 102 bits (253), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 111/222 (50%), Gaps = 17/222 (7%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G GLVKNLA+ +S P+++ + + M+ L + T + ++ K+F+NG WVG+
Sbjct: 521 GHAVGLVKNLALMAYISVGSQPSPILEFMEEWTMENLEEITPSAINTSTKIFVNGCWVGI 580
Query: 82 CEDSNLFVAEXXXXXXXX-XXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------ 134
D + ++ +V + RD +++E+RI++DAGRI RPLL+VEN
Sbjct: 581 HRDPDQLMSTLRKLRRRMDIIVSEVSMVRDFREREIRIYSDAGRICRPLLIVENQKLLLK 640
Query: 135 ---LHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVDKKQPL--KY 189
+ ++K + Y++Q L+ A L V+K Q Y
Sbjct: 641 KNHIDQLKEREYNEYSWQELVANGIVEYIDVNEEETVMVAMTPDEL---VEKGQAYCSTY 697
Query: 190 THCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
THCE+ S +LG+ IIPF +H+ + R YQ+ +QA+G
Sbjct: 698 THCEIHPSMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMG 738
>C9SGY6_VERA1 (tr|C9SGY6) DNA-directed RNA polymerase OS=Verticillium albo-atrum
(strain VaMs.102) GN=VDBG_04315 PE=3 SV=1
Length = 1260
Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 72/257 (28%), Positives = 112/257 (43%), Gaps = 49/257 (19%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNL++ VS EP+ID + GM+ L + + KVFLNG WVGV
Sbjct: 558 GQACGLVKNLSLMCYVSVGTPAEPIIDYMIQRGMEVLEEYEPLRYPNATKVFLNGVWVGV 617
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVENLHKIKAF 141
+D + V + +V + RD + +E +IF+DAGR++RP+ VVE H
Sbjct: 618 HQDPRVLVPDVQGTRRRNVISHEVSLVRDIRDREFKIFSDAGRVMRPVFVVEQSHHGAVP 677
Query: 142 KGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWG-------IKFLVA--------------- 179
+G + L+++ + W I++L A
Sbjct: 678 QGSLVLQKDLVNEMRDQQENPPDNPEDKITWQTLAHSGIIEYLDAEEEETSMICMTPEDL 737
Query: 180 ------------------GVDKKQPLK-------YTHCELDMSFLLGLSCGIIPFANHDH 214
G +++ K YTHCE+ S +LG+ IIPF +H+
Sbjct: 738 ELYRLRKAGHEVEEDISEGPNRRLRTKIAKTTHMYTHCEIHPSMILGICASIIPFPDHNQ 797
Query: 215 ARRVLYQAQKHSQQAIG 231
+ R YQ+ +QA+G
Sbjct: 798 SPRNTYQS-AMGKQAMG 813
>B9QBL7_TOXGO (tr|B9QBL7) DNA-directed RNA polymerase OS=Toxoplasma gondii VEG
GN=TGVEG_076350 PE=3 SV=1
Length = 1259
Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 110/221 (49%), Gaps = 15/221 (6%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ GLVKNLA+ +S + + L + G+D L + T + E+ KVF+NG WVG
Sbjct: 591 GQAVGLVKNLALMSDISVGSATNTVHEFLVEWGLDPLEEMTPDVIKERVKVFVNGSWVGC 650
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVE-------- 133
+++++ + I RD +EV+IF DAGR +RPL VV+
Sbjct: 651 FDEADVLCQTLRQLRRRCDISSETSIVRDLVNREVKIFTDAGRAMRPLFVVDEGTRDLVM 710
Query: 134 ---NLHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVDKKQPLKYT 190
+L +++ ++ L++K C A ++ + + +K+Q YT
Sbjct: 711 KRCHLEELQRRGKDEKSWGYLMEKGIIEFVDCEEEETCMIAMFVEDIRS--EKRQAFPYT 768
Query: 191 HCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
HCE+ S +LG+ IIPF +H+ + R +YQ+ +QA+G
Sbjct: 769 HCEIHPSLILGVCASIIPFPDHNQSPRNVYQS-AMGKQAMG 808
>B9PL56_TOXGO (tr|B9PL56) DNA-directed RNA polymerase OS=Toxoplasma gondii
GN=TGGT1_012000 PE=3 SV=1
Length = 1259
Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 110/221 (49%), Gaps = 15/221 (6%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ GLVKNLA+ +S + + L + G+D L + T + E+ KVF+NG WVG
Sbjct: 591 GQAVGLVKNLALMSDISVGSATNTVHEFLVEWGLDPLEEMTPDVIKERVKVFVNGSWVGC 650
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVE-------- 133
+++++ + I RD +EV+IF DAGR +RPL VV+
Sbjct: 651 FDEADVLCQTLRQLRRRCDISSETSIVRDLVNREVKIFTDAGRAMRPLFVVDEGTRDLVM 710
Query: 134 ---NLHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVDKKQPLKYT 190
+L +++ ++ L++K C A ++ + + +K+Q YT
Sbjct: 711 KRCHLEELQRRGKDEKSWGYLMEKGIIEFVDCEEEETCMIAMFVEDIRS--EKRQAFPYT 768
Query: 191 HCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
HCE+ S +LG+ IIPF +H+ + R +YQ+ +QA+G
Sbjct: 769 HCEIHPSLILGVCASIIPFPDHNQSPRNVYQS-AMGKQAMG 808
>B6KB61_TOXGO (tr|B6KB61) DNA-directed RNA polymerase OS=Toxoplasma gondii ME49
GN=TGME49_058210 PE=3 SV=1
Length = 1259
Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 110/221 (49%), Gaps = 15/221 (6%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ GLVKNLA+ +S + + L + G+D L + T + E+ KVF+NG WVG
Sbjct: 591 GQAVGLVKNLALMSDISVGSATNTVHEFLVEWGLDPLEEMTPDVIKERVKVFVNGSWVGC 650
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVE-------- 133
+++++ + I RD +EV+IF DAGR +RPL VV+
Sbjct: 651 FDEADVLCQTLRQLRRRCDISSETSIVRDLVNREVKIFTDAGRAMRPLFVVDEGTRDLVM 710
Query: 134 ---NLHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVDKKQPLKYT 190
+L +++ ++ L++K C A ++ + + +K+Q YT
Sbjct: 711 KRCHLEELQRRGKDEKSWGYLMEKGIIEFVDCEEEETCMIAMFVEDIRS--EKRQAFPYT 768
Query: 191 HCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
HCE+ S +LG+ IIPF +H+ + R +YQ+ +QA+G
Sbjct: 769 HCEIHPSLILGVCASIIPFPDHNQSPRNVYQS-AMGKQAMG 808
>Q6Q268_ESCCA (tr|Q6Q268) DNA-directed RNA polymerase (Fragment) OS=Eschscholzia
californica GN=RPB2 PE=3 SV=1
Length = 539
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 111/225 (49%), Gaps = 20/225 (8%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ V+ P+++IL D G + + + + + KVFLNG WVG+
Sbjct: 5 GQACGLVKNLALMVSVTVGSAANPILEILNDFGTEGFEEISPATISQATKVFLNGCWVGI 64
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN---LHKI 138
++++ V +V I RD + KE+RI+ D GR RPL +VEN L K
Sbjct: 65 HRNADVLVNNLRLLRRRVLVNTEVGITRDTRLKELRIYTDYGRCCRPLFIVENQRLLIKR 124
Query: 139 KAFK----------GGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVDKKQ--P 186
K + GG ++ L+ K + + I L + + K+
Sbjct: 125 KDIRVIQQRENPDEGG---WRDLVAKGYVEYIDTEEEENTMISMTINDLASVFNPKEAYS 181
Query: 187 LKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
+ YTHCE+ S +LG+ IIPF +H+ + R YQ+ +QA+G
Sbjct: 182 VTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAM-GKQAMG 225
>A4RQU3_OSTLU (tr|A4RQU3) DNA-directed RNA polymerase OS=Ostreococcus lucimarinus
(strain CCE9901) GN=OSTLU_13673 PE=3 SV=1
Length = 1174
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 107/225 (47%), Gaps = 17/225 (7%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ GLVKNLA+ LVS EP+++ L + M+ L + + + + E K+FLNG WVGV
Sbjct: 513 GQAVGLVKNLALMALVSVGSPSEPILEFLDEWTMENLEEISPSLIAESTKIFLNGVWVGV 572
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVENLHKIKAF 141
+ V V + D + KE+R++ D GR RPL +VE+ K+K
Sbjct: 573 HRNPADLVRTLRKLRRQCDIDSSVSVVHDIRLKELRLYTDYGRCTRPLFIVEDDQKLKIK 632
Query: 142 KG----------GNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAG---VDKKQ--P 186
K YT+ L+ + I LVAG V++
Sbjct: 633 KQHIELLTEKDVTGYTWNELVTSGFIEYVDTEEEETTMISMTIDDLVAGRHAVEQNTGVA 692
Query: 187 LKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
+ YTHCE+ S +LG+ IIPF +H+ + R YQ+ +QA+G
Sbjct: 693 INYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS-AMGKQAMG 736
>B4K015_DROGR (tr|B4K015) DNA-directed RNA polymerase OS=Drosophila grimshawi
GN=GH19704 PE=3 SV=1
Length = 1175
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 103/220 (46%), Gaps = 12/220 (5%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G GLVKNLA+ +S P+++ L + M+ L + + + + K+F+NG WVG+
Sbjct: 517 GAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGI 576
Query: 82 CEDSNLFVAEXXXXXXXX-XXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------ 134
D +A +V + RD + +E+RI+ DAGRI RPLL+VEN
Sbjct: 577 HRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGTLLLK 636
Query: 135 ---LHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVDKKQPLKYTH 191
+ +K NY++Q L+ A L D YTH
Sbjct: 637 KTHVEMLKERDYNNYSWQVLVASGVVEYIDTLEEETVMIAMSPYDLKQDKDYAYCTTYTH 696
Query: 192 CELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
CE+ + +LG+ IIPF +H+ + R YQ+ +QA+G
Sbjct: 697 CEIHPAMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMG 735
>B4R0H5_DROSI (tr|B4R0H5) DNA-directed RNA polymerase OS=Drosophila simulans
GN=GD18948 PE=3 SV=1
Length = 1176
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 103/220 (46%), Gaps = 12/220 (5%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G GLVKNLA+ +S P+++ L + M+ L + + + + K+F+NG WVG+
Sbjct: 518 GAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGI 577
Query: 82 CEDSNLFVAEXXXXXXXX-XXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------ 134
D +A +V + RD + +E+RI+ DAGRI RPLL+VEN
Sbjct: 578 HRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLK 637
Query: 135 ---LHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVDKKQPLKYTH 191
+ +K NY++Q L+ A L D YTH
Sbjct: 638 KTHVEMLKERDYNNYSWQVLVASGVVEYIDTLEEETVMIAMSPYDLKQDKDYAYCTTYTH 697
Query: 192 CELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
CE+ + +LG+ IIPF +H+ + R YQ+ +QA+G
Sbjct: 698 CEIHPAMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMG 736
>B3LYR3_DROAN (tr|B3LYR3) DNA-directed RNA polymerase OS=Drosophila ananassae
GN=GF16238 PE=3 SV=1
Length = 1176
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 103/220 (46%), Gaps = 12/220 (5%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G GLVKNLA+ +S P+++ L + M+ L + + + + K+F+NG WVG+
Sbjct: 518 GAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGI 577
Query: 82 CEDSNLFVAEXXXXXXXX-XXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------ 134
D +A +V + RD + +E+RI+ DAGRI RPLL+VEN
Sbjct: 578 HRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLK 637
Query: 135 ---LHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVDKKQPLKYTH 191
+ +K NY++Q L+ A L D YTH
Sbjct: 638 KTHVEMLKERDYNNYSWQVLVASGVVEYIDTLEEETVMIAMSPYDLKQDKDYAYCTTYTH 697
Query: 192 CELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
CE+ + +LG+ IIPF +H+ + R YQ+ +QA+G
Sbjct: 698 CEIHPAMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMG 736
>B4N9I3_DROWI (tr|B4N9I3) DNA-directed RNA polymerase OS=Drosophila willistoni
GN=GK12191 PE=3 SV=1
Length = 1176
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 103/220 (46%), Gaps = 12/220 (5%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G GLVKNLA+ +S P+++ L + M+ L + + + + K+F+NG WVG+
Sbjct: 518 GAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGI 577
Query: 82 CEDSNLFVAEXXXXXXXX-XXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------ 134
D +A +V + RD + +E+RI+ DAGRI RPLL+VEN
Sbjct: 578 HRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLK 637
Query: 135 ---LHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVDKKQPLKYTH 191
+ +K NY++Q L+ A L D YTH
Sbjct: 638 KTHVEMLKERDYNNYSWQVLVASGVVEYIDTLEEETVMIAMSPYDLKQDKDYAYCTTYTH 697
Query: 192 CELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
CE+ + +LG+ IIPF +H+ + R YQ+ +QA+G
Sbjct: 698 CEIHPAMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMG 736
>B4M040_DROVI (tr|B4M040) DNA-directed RNA polymerase OS=Drosophila virilis
GN=RpII140 PE=3 SV=1
Length = 1176
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 103/220 (46%), Gaps = 12/220 (5%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G GLVKNLA+ +S P+++ L + M+ L + + + + K+F+NG WVG+
Sbjct: 518 GAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGI 577
Query: 82 CEDSNLFVAEXXXXXXXX-XXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------ 134
D +A +V + RD + +E+RI+ DAGRI RPLL+VEN
Sbjct: 578 HRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGTLLLK 637
Query: 135 ---LHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVDKKQPLKYTH 191
+ +K NY++Q L+ A L D YTH
Sbjct: 638 KTHVEMLKERDYNNYSWQVLVASGVVEYIDTLEEETVMIAMSPYDLKQDKDYAYCTTYTH 697
Query: 192 CELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
CE+ + +LG+ IIPF +H+ + R YQ+ +QA+G
Sbjct: 698 CEIHPAMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMG 736
>Q298X6_DROPS (tr|Q298X6) DNA-directed RNA polymerase OS=Drosophila pseudoobscura
pseudoobscura GN=GA16485 PE=3 SV=2
Length = 1176
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 103/220 (46%), Gaps = 12/220 (5%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G GLVKNLA+ +S P+++ L + M+ L + + + + K+F+NG WVG+
Sbjct: 518 GAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGI 577
Query: 82 CEDSNLFVAEXXXXXXXX-XXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------ 134
D +A +V + RD + +E+RI+ DAGRI RPLL+VEN
Sbjct: 578 HRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLK 637
Query: 135 ---LHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVDKKQPLKYTH 191
+ +K NY++Q L+ A L D YTH
Sbjct: 638 KTHVEMLKERDYNNYSWQVLVASGVVEYIDTLEEETVMIAMSPYDLKQDKDYAYCTTYTH 697
Query: 192 CELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
CE+ + +LG+ IIPF +H+ + R YQ+ +QA+G
Sbjct: 698 CEIHPAMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMG 736
>B4G4U0_DROPE (tr|B4G4U0) DNA-directed RNA polymerase OS=Drosophila persimilis
GN=GL24239 PE=3 SV=1
Length = 1176
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 103/220 (46%), Gaps = 12/220 (5%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G GLVKNLA+ +S P+++ L + M+ L + + + + K+F+NG WVG+
Sbjct: 518 GAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGI 577
Query: 82 CEDSNLFVAEXXXXXXXX-XXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------ 134
D +A +V + RD + +E+RI+ DAGRI RPLL+VEN
Sbjct: 578 HRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLK 637
Query: 135 ---LHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVDKKQPLKYTH 191
+ +K NY++Q L+ A L D YTH
Sbjct: 638 KTHVEMLKERDYNNYSWQVLVASGVVEYIDTLEEETVMIAMSPYDLKQDKDYAYCTTYTH 697
Query: 192 CELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
CE+ + +LG+ IIPF +H+ + R YQ+ +QA+G
Sbjct: 698 CEIHPAMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMG 736
>B4PTC0_DROYA (tr|B4PTC0) DNA-directed RNA polymerase OS=Drosophila yakuba
GN=GE24221 PE=3 SV=1
Length = 1176
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 103/220 (46%), Gaps = 12/220 (5%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G GLVKNLA+ +S P+++ L + M+ L + + + + K+F+NG WVG+
Sbjct: 518 GAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGI 577
Query: 82 CEDSNLFVAEXXXXXXXX-XXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------ 134
D +A +V + RD + +E+RI+ DAGRI RPLL+VEN
Sbjct: 578 HRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLK 637
Query: 135 ---LHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVDKKQPLKYTH 191
+ +K NY++Q L+ A L D YTH
Sbjct: 638 KTHVEMLKERDYNNYSWQVLVASGVVEYIDTLEEETVMIAMSPYDLKQDKDYAYCTTYTH 697
Query: 192 CELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
CE+ + +LG+ IIPF +H+ + R YQ+ +QA+G
Sbjct: 698 CEIHPAMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMG 736
>B4KDW5_DROMO (tr|B4KDW5) DNA-directed RNA polymerase OS=Drosophila mojavensis
GN=GI23040 PE=3 SV=1
Length = 1176
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 103/220 (46%), Gaps = 12/220 (5%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G GLVKNLA+ +S P+++ L + M+ L + + + + K+F+NG WVG+
Sbjct: 518 GAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGI 577
Query: 82 CEDSNLFVAEXXXXXXXX-XXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------ 134
D +A +V + RD + +E+RI+ DAGRI RPLL+VEN
Sbjct: 578 HRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGTLLLK 637
Query: 135 ---LHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVDKKQPLKYTH 191
+ +K NY++Q L+ A L D YTH
Sbjct: 638 KTHVEMLKERDYNNYSWQVLVASGVVEYIDTLEEETVMIAMSPYDLKQDKDYAYCTTYTH 697
Query: 192 CELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
CE+ + +LG+ IIPF +H+ + R YQ+ +QA+G
Sbjct: 698 CEIHPAMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMG 736
>B4HF52_DROSE (tr|B4HF52) DNA-directed RNA polymerase OS=Drosophila sechellia
GN=GM24152 PE=3 SV=1
Length = 1176
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 103/220 (46%), Gaps = 12/220 (5%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G GLVKNLA+ +S P+++ L + M+ L + + + + K+F+NG WVG+
Sbjct: 518 GAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGI 577
Query: 82 CEDSNLFVAEXXXXXXXX-XXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------ 134
D +A +V + RD + +E+RI+ DAGRI RPLL+VEN
Sbjct: 578 HRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLK 637
Query: 135 ---LHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVDKKQPLKYTH 191
+ +K NY++Q L+ A L D YTH
Sbjct: 638 KTHVEMLKERDYNNYSWQVLVASGVVEYIDTLEEETVMIAMSPYDLKQDKDYAYCTTYTH 697
Query: 192 CELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
CE+ + +LG+ IIPF +H+ + R YQ+ +QA+G
Sbjct: 698 CEIHPAMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMG 736
>B3P0M0_DROER (tr|B3P0M0) DNA-directed RNA polymerase OS=Drosophila erecta
GN=GG16840 PE=3 SV=1
Length = 1176
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 103/220 (46%), Gaps = 12/220 (5%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G GLVKNLA+ +S P+++ L + M+ L + + + + K+F+NG WVG+
Sbjct: 518 GAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGI 577
Query: 82 CEDSNLFVAEXXXXXXXX-XXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------ 134
D +A +V + RD + +E+RI+ DAGRI RPLL+VEN
Sbjct: 578 HRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLK 637
Query: 135 ---LHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVDKKQPLKYTH 191
+ +K NY++Q L+ A L D YTH
Sbjct: 638 KTHVEMLKERDYNNYSWQVLVASGVVEYIDTLEEETVMIAMSPYDLKQDKDYAYCTTYTH 697
Query: 192 CELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
CE+ + +LG+ IIPF +H+ + R YQ+ +QA+G
Sbjct: 698 CEIHPAMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMG 736
>C3Y5U9_BRAFL (tr|C3Y5U9) DNA-directed RNA polymerase OS=Branchiostoma floridae
GN=BRAFLDRAFT_126222 PE=3 SV=1
Length = 1104
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 110/235 (46%), Gaps = 29/235 (12%)
Query: 16 LEMLDTHGENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFL 74
+ M+ +G+ GLVKNLA+ +S P+++ L + M+ L + + + K+F+
Sbjct: 534 ISMVHDNGQAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEVAPSAIANATKIFV 593
Query: 75 NGEWVGVCEDS-NLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVE 133
NG WVGV D L +V + RD +++E+RIF DAGRI RPLL+VE
Sbjct: 594 NGCWVGVHRDPEQLMNTLKKLRRQMDIIVSEVSMVRDIREREIRIFTDAGRICRPLLIVE 653
Query: 134 ---------NLHKIKAFKGGNYTFQSL--------LDKXXXXXXXXXXXXDCSTAWGIKF 176
++ +K + NY++Q L +D D G+ +
Sbjct: 654 KQKLLLKKHHVDMLKEREYNNYSWQDLVAGGVVEYIDTLEEETVMLAMTPDDLQDKGVAY 713
Query: 177 LVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
YTHCE+ S +LG+ IIPF +H+ + R YQ+ +QA+G
Sbjct: 714 CST---------YTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMG 758
>Q1KLM3_9APHY (tr|Q1KLM3) DNA-directed RNA polymerase (Fragment) OS=Fistulina
antarctica GN=rpb2 PE=3 SV=1
Length = 690
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 79/246 (32%), Positives = 114/246 (46%), Gaps = 42/246 (17%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 130 GQACGLVKNLALMACISVGSYSAPVIDFLEEWGLESLXENAHSST-PCTKVFVNGVWMGV 188
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN----LHK 137
D +V + RD ++KE+RIF DAGR+ RPL +VEN L K
Sbjct: 189 HRDPANLAKXIRKLRRKDDISPEVSVVRDVREKELRIFTDAGRVCRPLFIVENQQLLLQK 248
Query: 138 --IKAFKGG----NYTFQ----------SLLD-KXXXXXXXXXXXXDCSTAW----GIKF 176
I+ G TFQ LLD + D T+ GI+
Sbjct: 249 KHIQWLNAGVKDDGSTFQWEQLIKDGIIELLDAEEEETVMISMTPEDLETSRLQSSGIET 308
Query: 177 -----------LVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKH 225
L AG++ +THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 309 QDEEDFDPAARLKAGINTH---TWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS-AM 364
Query: 226 SQQAIG 231
+QA+G
Sbjct: 365 GKQAMG 370
>D7FHZ3_ECTSI (tr|D7FHZ3) Putative uncharacterized protein OS=Ectocarpus
siliculosus GN=Esi_0115_0051 PE=4 SV=1
Length = 1277
Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 101/218 (46%), Gaps = 12/218 (5%)
Query: 23 GENCGLVKNLAITGLVSTEI-LEPLIDILFDCGMDKLVDDTHTKLDEK--YKVFLNGEWV 79
G+ GLVKNLA+ +S L P+++ L + M+ L + + + KVF+NG WV
Sbjct: 608 GQAVGLVKNLALMAYISVGCSLSPILEFLEEWAMENLDEIAPHMIAQTNCTKVFVNGNWV 667
Query: 80 GVCEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVENLH--- 136
GV D N V +V + RD + +E+R++ DAGR+ RPL VVEN
Sbjct: 668 GVHRDPNRLVQTLVHQRRALDIDVEVSVVRDIKGRELRLYTDAGRVCRPLFVVENNRLRI 727
Query: 137 ---KIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVDKKQPLKYTHCE 193
I NY + +L+ + A K L YTHCE
Sbjct: 728 RKKHINDLHDPNYGWTNLMQQGVVEYIDTEEEETTMVAMEPKDLEESGGYSS--TYTHCE 785
Query: 194 LDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
+ S +LG+ IIPF +H+ + R YQ+ +QA+G
Sbjct: 786 IHPSMILGVCASIIPFPDHNQSPRNTYQSAM-GKQAMG 822
>D0NLW9_PHYIN (tr|D0NLW9) DNA-directed RNA polymerase OS=Phytophthora infestans
T30-4 GN=PITG_13404 PE=3 SV=1
Length = 1202
Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 103/219 (47%), Gaps = 16/219 (7%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ GLVKNLA+ +S + P+++ L + + L + + K+F+NG WVGV
Sbjct: 532 GQAVGLVKNLALMAYISVGSPQAPILEFLEEWATENLEEIKPQIIPHSTKIFVNGNWVGV 591
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
+ N + +V + RD KE+RI+ DAGR+ RPL +VE+
Sbjct: 592 HREPNELIRTLRSLRRCVDIDAEVSVIRDLMNKELRIYTDAGRVCRPLFIVEDNQLLLQK 651
Query: 135 --LHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVDKKQPLKYTHC 192
+ K++ K NY + +LL C A K + G +THC
Sbjct: 652 EQVVKLQNHKITNYRWHNLLTDGVVELIDTEEEEVCMIAMEPKDVGTGSQ-----IHTHC 706
Query: 193 ELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
E+ S +LG+ IIPF +H+ + R YQ+ +QA+G
Sbjct: 707 EIHPSMILGICASIIPFPDHNQSPRNTYQSAM-GKQAMG 744
>Q01GR3_OSTTA (tr|Q01GR3) DNA-directed RNA polymerase OS=Ostreococcus tauri
GN=Ot01g01700 PE=3 SV=1
Length = 999
Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 106/225 (47%), Gaps = 17/225 (7%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ GLVKNLA+ LVS EP+++ L + M+ L + + + + E K+FLNG WVGV
Sbjct: 359 GQAVGLVKNLALMALVSVGSPSEPILEFLDEWTMENLEEISPSLIAESTKIFLNGVWVGV 418
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVENLHKIKAF 141
D V V + D + KE+R++ D GR RPL +V++ K++
Sbjct: 419 HRDPADLVRTLRKLRRQCDVDSSVSVVHDIRLKELRLYTDYGRCTRPLFIVDDDQKLRIK 478
Query: 142 KG----------GNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAG---VDKKQ--P 186
K Y++ L+ + I L A D+K
Sbjct: 479 KQHIELLTEKDVTGYSWNELVTSGFIEYVDTEEEETTMISMTIDDLAAARQSADRKTGVA 538
Query: 187 LKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
++YTHCE+ S +LG+ IIPF +H+ + R YQ+ +QA+G
Sbjct: 539 IRYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS-AMGKQAMG 582
>Q27548_CRAGI (tr|Q27548) DNA-directed RNA polymerase (Fragment) OS=Crassostrea
gigas PE=2 SV=1
Length = 859
Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 107/220 (48%), Gaps = 13/220 (5%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G GLVKNLA+ +S P+++ L + M+ L + + + + + K+F+NG WVG+
Sbjct: 324 GSAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEVSPSAIQDATKIFVNGCWVGI 383
Query: 82 CEDS-NLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------ 134
D L +V + RD + +E+RI+ DAGRI RPLL+VEN
Sbjct: 384 HRDPEQLMNTLRKLRREMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENQKLLLK 443
Query: 135 ---LHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVDKKQPLKYTH 191
+ ++K + NY++Q L+ A L + D + YTH
Sbjct: 444 QSHIKQLKQREYNNYSWQDLVASGVVEYIDPLEEESIMLAMTPDDL-SDKDVQYCSTYTH 502
Query: 192 CELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
CE+ + +LG+ IIPF +H+ + R YQ+ +QA+G
Sbjct: 503 CEIHPAMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMG 541
>Q2I5S7_UMBRA (tr|Q2I5S7) DNA-directed RNA polymerase (Fragment) OS=Umbelopsis
ramanniana GN=RPB2 PE=3 SV=1
Length = 717
Score = 98.2 bits (243), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 108/241 (44%), Gaps = 34/241 (14%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S PLI L + M+ L + + + + + K+F+NG WVG+
Sbjct: 128 GQACGLVKNLALMSYISVGSAAAPLILFLEEWAMENLEELSASNIPDATKIFVNGVWVGI 187
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVENLHKIKAF 141
D + +V I RD ++KE+R++ DAGR RPL +VE+ ++K
Sbjct: 188 HRDPGELITSLKQMRRSVDISPEVSIVRDIREKELRMYTDAGRCCRPLFIVED-QQLKLT 246
Query: 142 K---------GGNYTFQSLLDK---XXXXXXXXXXXXDCSTAWGIKFLVAGVDKKQPLK- 188
K NY +Q L+ C T + + +PL+
Sbjct: 247 KDHVALLQDPDSNYRWQDLISDGIIEYIDAEEEETAMICMTPEDLAESRYSAEYGKPLQS 306
Query: 189 ------------------YTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAI 230
+THCE+ S +LG+ IIPF +H+ + R YQ+ +QA+
Sbjct: 307 DRDVASRLKTQQSGYSHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS-AMGKQAM 365
Query: 231 G 231
G
Sbjct: 366 G 366
>Q207H1_GANTS (tr|Q207H1) DNA-directed RNA polymerase (Fragment) OS=Ganoderma
tsugae GN=rpb2 PE=3 SV=1
Length = 883
Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 112/243 (46%), Gaps = 36/243 (14%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNL++ +S L P+I+ L + G++ L ++ H KVF+NG W+GV
Sbjct: 304 GQACGLVKNLSLMSCISVGTLSAPVIEFLEEWGLESLEENAHAS-TPCTKVFVNGVWMGV 362
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D V+ +V + RD +++E+R++ DAGR+ RPL +VEN
Sbjct: 363 HRDPVKLVSTLRKLRRKDDINCEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLLIQK 422
Query: 135 -----LHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXD---CSTAWGI---KFLVAGVDK 183
L + K +Y + SLL C T + + AG+D
Sbjct: 423 KHIESLVRAKEDPTLSYNWDSLLKDGVIELLDAEEEETVMICMTPEDLENSRLQAAGIDP 482
Query: 184 ------------KQPLK---YTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQ 228
K P +THCE+ S +LG+ IIPF +H+ + R YQ+ +Q
Sbjct: 483 HADEENDPSARLKAPTSAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS-AMGKQ 541
Query: 229 AIG 231
A+G
Sbjct: 542 AMG 544
>A7J5A8_9LECA (tr|A7J5A8) DNA-directed RNA polymerase (Fragment) OS=Megalospora
tuberculosa GN=RPB2 PE=3 SV=1
Length = 718
Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 75/263 (28%), Positives = 107/263 (40%), Gaps = 57/263 (21%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S EP++D L GM+ L + T+ KVF+NG WVGV
Sbjct: 135 GQACGLVKNLALMCYISVGSPAEPIVDYLIQRGMEILEEYEPTRSPNATKVFVNGVWVGV 194
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVENLHKIKAF 141
D L V+ + + RD + +E +IF DAGR+ RPL VV N K+
Sbjct: 195 HHDPALLVSNVQELRRTNIIPHEASLVRDIRDREFKIFTDAGRVCRPLFVVNN--DFKSD 252
Query: 142 KGGNYTFQSLLDKXXXXXXXXXXXXD----CSTAWGIKFLV------------------- 178
G+ + + D T+ G + LV
Sbjct: 253 NAGSLVLTKEMVQKVEDERDVVIAMDPEERAGTSIGWQGLVYARAIQYVDAEEEETIMIV 312
Query: 179 -------------AGVDKKQPL-----------------KYTHCELDMSFLLGLSCGIIP 208
AG D QP +THCE+ S +LG+ IIP
Sbjct: 313 MTPEDLEISRQVQAGYDAPQPSADAPNSRVKAAVNPTAHTWTHCEIHPSMILGICASIIP 372
Query: 209 FANHDHARRVLYQAQKHSQQAIG 231
F +H+ + R YQ+ +QA+G
Sbjct: 373 FPDHNQSPRNTYQS-AMGKQAMG 394
>Q4N2K9_THEPA (tr|Q4N2K9) DNA-directed RNA polymerase OS=Theileria parva
GN=TP04_0340 PE=3 SV=1
Length = 1190
Score = 97.8 bits (242), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 99/216 (45%), Gaps = 10/216 (4%)
Query: 23 GENCGLVKNLAITGLVSTEILEPLI-DILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ GLVKNLA+ +S L I D L + GMD L + + + ++ K+FLNG WVGV
Sbjct: 536 GQAVGLVKNLALMCYISVGSLSSTILDFLLEFGMDSLDEISPILIKDRVKIFLNGTWVGV 595
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVENLHKIKAF 141
+ V + I RD E++IF DAGR +RPL +VEN +
Sbjct: 596 FNQPDSLVNVLLELRRKGNISSETSIVRDIMSNEIKIFTDAGRSMRPLYIVENNRLLITK 655
Query: 142 KGGNY------TFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVDKKQPLKYTHCELD 195
K + T+ LL+ C A LV + YTHCE+
Sbjct: 656 KHADMIENRQLTWSGLLETGVVEYIDCEEEEICMIAMFPDDLVNNNNYCN--SYTHCEIH 713
Query: 196 MSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
S +LG+ IIPF + + + R YQ+ +QA+G
Sbjct: 714 PSMILGVCASIIPFPDQNQSPRNTYQS-AMGKQAMG 748
>D4NXR7_9AGAR (tr|D4NXR7) RNA polymerase II second largest subunit (Fragment)
OS=Cortinarius sp. Trestrail s.n. GN=rpb2 PE=3 SV=1
Length = 240
Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 105/235 (44%), Gaps = 36/235 (15%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S I P+I+ L + G++ L + +H+ K+F+NG W+GV
Sbjct: 6 GQACGLVKNLALMACISVGSIAAPVIEFLEEWGLESLEEHSHS-FAPSTKIFVNGVWIGV 64
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVENLHKI--- 138
D V ++ + RD ++KE+R++ DAGR+ RPL +VEN H I
Sbjct: 65 HRDPANLVKTLKKLRRKDDISPEISVVRDIREKELRVYTDAGRVCRPLFIVENQHLILQK 124
Query: 139 --------------------KAFKGGNYTFQSLLDKXXXXXXXXXXXXDCS--TAWGIKF 176
+ KGG ++ + S G++
Sbjct: 125 KHIRWLNNGVNDEGEEFKWDRLIKGGIIELLDAEEEETVMISMTPEDLENSRLQRTGVEL 184
Query: 177 LV--AGVDKKQPLK-------YTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
V D LK +THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 185 QVNEGEFDPAARLKAGTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 239
>D4NXR6_COROR (tr|D4NXR6) RNA polymerase II second largest subunit (Fragment)
OS=Cortinarius orellanus GN=rpb2 PE=3 SV=1
Length = 240
Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 105/235 (44%), Gaps = 36/235 (15%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S I P+I+ L + G++ L + +H+ K+F+NG W+GV
Sbjct: 6 GQACGLVKNLALMACISVGSIAAPVIEFLEEWGLESLEEHSHS-FAPSTKIFVNGVWIGV 64
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVENLHKI--- 138
D V ++ + RD ++KE+R++ DAGR+ RPL +VEN H I
Sbjct: 65 HRDPANLVKTLKKLRRKDDISPEISVVRDIREKELRVYTDAGRVCRPLFIVENQHLILQK 124
Query: 139 --------------------KAFKGGNYTFQSLLDKXXXXXXXXXXXXDCS--TAWGIKF 176
+ KGG ++ + S G++
Sbjct: 125 KHIRWLNNGVNDEGEEFKWDRLIKGGIIELLDAEEEETVMISMTPEDLENSRLQRTGVEL 184
Query: 177 LV--AGVDKKQPLK-------YTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
V D LK +THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 185 QVNEGEFDPAARLKAGTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 239
>B8C598_THAPS (tr|B8C598) DNA-directed RNA polymerase OS=Thalassiosira pseudonana
GN=RPB21 PE=3 SV=1
Length = 1196
Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 102/223 (45%), Gaps = 15/223 (6%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKY--KVFLNGEWV 79
G+ GLVKN+A+ ++T + P+++ L + + L D + + E K+F+NG WV
Sbjct: 523 GQAVGLVKNMALMAYITTGTSQVPVMEFLEEFSTENLTDILPSVIAEPNTCKIFVNGNWV 582
Query: 80 GVCEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVENL---- 135
G+ D V +V I RD + EVRI+ DAGRI RPL +V +
Sbjct: 583 GIHRDPKQLVHTFRSLRRMIDIDAEVSIVRDIPESEVRIYTDAGRICRPLFIVTDQELAI 642
Query: 136 --HKIKAFKG-----GNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVDKKQPLK 188
H I +G T+ LL + A K L V +
Sbjct: 643 KKHHISQLQGVSPDQKKLTWTDLLMEGLVEYVDTEEEETTMIAMEPKDLDMTVGEPYSTT 702
Query: 189 YTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
YTHCE+ S +LG+ IIPF +H+ + R YQ+ +QA+G
Sbjct: 703 YTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS-AMGKQAMG 744
>D6WZU5_TRICA (tr|D6WZU5) Putative uncharacterized protein OS=Tribolium castaneum
GN=TcasGA2_TC011771 PE=4 SV=1
Length = 1175
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 102/220 (46%), Gaps = 12/220 (5%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G GLVKNLA+ +S P+++ L + M+ L + + + K+F+NG WVG+
Sbjct: 517 GAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIANATKIFVNGCWVGI 576
Query: 82 CEDSNLFVAEXXXXXXXX-XXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------ 134
D +A +V + RD + +E+RI+ DAGRI RPLL+VEN
Sbjct: 577 HRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGTLLLK 636
Query: 135 ---LHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVDKKQPLKYTH 191
+ +K + NY +Q L+ A L + YTH
Sbjct: 637 KRHIDMLKEREYNNYGWQVLVASGVVEYIDTLEEETVMIAMSPDDLRQEKEYAYCTTYTH 696
Query: 192 CELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
CE+ + +LG+ IIPF +H+ + R YQ+ +QA+G
Sbjct: 697 CEIHPAMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMG 735
>Q4U9X1_THEAN (tr|Q4U9X1) DNA-directed RNA polymerase OS=Theileria annulata
GN=TA07925 PE=3 SV=1
Length = 1223
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 99/216 (45%), Gaps = 10/216 (4%)
Query: 23 GENCGLVKNLAITGLVSTEILEPLI-DILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ GLVKNLA+ +S L I D L + GMD L + + + ++ K+FLNG WVGV
Sbjct: 569 GQAVGLVKNLALMCYISVGSLSSTILDFLLEFGMDSLDEISPILIKDRVKIFLNGTWVGV 628
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVENLHKIKAF 141
+ V + I RD E++IF D+GR +RPL +VEN +
Sbjct: 629 FNQPDSLVNVLLELRRKGNISSETSIVRDIMSNEIKIFTDSGRSMRPLYIVENNRLLITK 688
Query: 142 KGGNY------TFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVDKKQPLKYTHCELD 195
+ N T+ L++ C A LV + YTHCE+
Sbjct: 689 RHANMIENNQLTWSGLMETGVVEYIDCEEEEICMIAMFPDDLVNNNNYCN--SYTHCEIH 746
Query: 196 MSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
S +LG+ IIPF + + + R YQ+ +QA+G
Sbjct: 747 PSMILGVCASIIPFPDQNQSPRNTYQS-AMGKQAMG 781
>Q9UVA3_AGABI (tr|Q9UVA3) DNA-directed RNA polymerase (Fragment) OS=Agaricus
bisporus GN=RPB2 PE=3 SV=1
Length = 914
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 110/247 (44%), Gaps = 43/247 (17%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S P+I+ L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 322 GQACGLVKNLALMSCISVGSYSAPVIEFLEEWGLESLEENAHST-SPCTKVFVNGVWMGV 380
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D V +V + RD ++KE+RI+ DAGR+ RPL +VEN
Sbjct: 381 HRDPANLVKTIKKLRRKDDISPEVSVVRDIREKELRIYTDAGRVCRPLFIVENQQLLLGK 440
Query: 135 -----LHKIKAFKGGNYTFQSLLD---------KXXXXXXXXXXXXDCSTAWGIKFLVAG 180
L+ +G Y ++ L+ + D + + AG
Sbjct: 441 RHIRWLNSGSDDEGNEYKWEQLIKGGVIELLDAEEEETVMISMTPEDLENS---RLQAAG 497
Query: 181 VDK----------------KQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQK 224
VD +THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 498 VDPHANDGDFDPAARLKAGTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS-A 556
Query: 225 HSQQAIG 231
++QA+G
Sbjct: 557 MAKQAMG 563
>A1YID1_9FUNG (tr|A1YID1) DNA-directed RNA polymerase (Fragment) OS=Basidiobolus
ranarum GN=RPB2 PE=3 SV=1
Length = 883
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 106/247 (42%), Gaps = 43/247 (17%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S P++++L D M+ L + + + K+F+NG WVG+
Sbjct: 322 GQACGLVKNLALMSYISVGNPSAPVVEVLADWAMESLEQFSANNIADATKIFVNGVWVGI 381
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVENLH----- 136
D + +V I RD + KE+R + DAGR+ RPL VVEN
Sbjct: 382 HRDPGNLIETMRRFRRRVDISPEVSIVRDIRDKEIRFYTDAGRVCRPLYVVENQRITLRK 441
Query: 137 ------KIKAFKGGNYTFQSLL--------------------------DKXXXXXXXXXX 164
+++ + G + +Q L+ +
Sbjct: 442 EHVVALQMREYDGEPFGWQDLVVNGIVEYLDAEEEEVSMICMTPEDLSESRMYSKLGYIP 501
Query: 165 XXDCSTAWGIKFLVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQK 224
+ A +K A + +THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 502 EREVDVASRVKSSAALITH----TWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS-A 556
Query: 225 HSQQAIG 231
+QA+G
Sbjct: 557 MGKQAMG 563
>Q1L6W0_9TRAC (tr|Q1L6W0) DNA-directed RNA polymerase (Fragment) OS=Lycopodium
sp. JL-2005 GN=RPD2 PE=2 SV=1
Length = 510
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 82/163 (50%), Gaps = 11/163 (6%)
Query: 78 WVGVCEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVENLH- 136
W G ++ V +VEI RD KEV+I+ D+GRILRPLL V+ H
Sbjct: 3 WKGWHQNPETLVETLRKLRRCGHISXEVEIARDPIYKEVKIYTDSGRILRPLLXVDKQHL 62
Query: 137 --------KIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVDKKQPLK 188
K KA K + F+ LL + + A ++ L +K+ +
Sbjct: 63 LITKKHIAKAKALKSES-AFKFLLQEGVVELLGVDEEEEALVALNVEXLEVS-NKRHSVH 120
Query: 189 YTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
YTHCEL SF+LGL +IPF NH+ + RV+ QAQKH + AIG
Sbjct: 121 YTHCELHPSFILGLGASVIPFPNHNQSSRVMQQAQKHGKXAIG 163
>Q207G4_9APHY (tr|Q207G4) DNA-directed RNA polymerase (Fragment) OS=Spongipellis
pachyodon GN=rpb2 PE=3 SV=1
Length = 901
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 113/240 (47%), Gaps = 33/240 (13%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNL++ +S P+I+ L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 313 GQACGLVKNLSLMSCISVGSFSGPVIEFLEEWGLESLEENVHSPTPTT-KVFVNGVWMGV 371
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVENLH----- 136
D V +V + RD +++E+RI+ DAGR+ RPL +VE+
Sbjct: 372 HRDPVNLVKTIKKLRRKDDISPEVSVVRDTRERELRIYTDAGRVCRPLFIVEDEQLAIKK 431
Query: 137 ---KIKAFKGGNYTFQSLLDKXXXX---XXXXXXXXDCSTAWGI---KFLVAGVDKK--- 184
++ K N+ + ++ K C T + + AG+D++
Sbjct: 432 KHIRMLEDKDSNFAWDDMIKKGIIELLDAEEEETAMICMTPEDLEASRLAGAGMDQEDES 491
Query: 185 --QPLK-----------YTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
P K +THCE+ S +LG+ IIPF +H+ + R YQ+ +QA+G
Sbjct: 492 EFDPSKRLRTTGSSIHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMG 550
>Q873T2_9AGAR (tr|Q873T2) DNA-directed RNA polymerase (Fragment)
OS=Henningsomyces candidus PE=3 SV=2
Length = 848
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 111/248 (44%), Gaps = 44/248 (17%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S L P+I+ L + G++ L D+ H+ + KVF+NG W+GV
Sbjct: 298 GQACGLVKNLALMACISVGSLSAPVIEFLEEWGLESLEDNAHSTV-PCTKVFVNGVWMGV 356
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVENLHKIKAF 141
D V +V + RD +++E+R++ DAGR+ RPL +VEN +
Sbjct: 357 HRDPGNLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLVLQK 416
Query: 142 K------------GGNYTFQSLLD---------KXXXXXXXXXXXXDCSTAWGIKFLVAG 180
K G + ++SL+ + D T+ + +G
Sbjct: 417 KHVKWLGQGTDDQGSKFLWESLIKTGIVELLDAEEEETVMISMTPEDLETS---RLQQSG 473
Query: 181 VDK-----------------KQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQ 223
D +THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 474 ADPHTHEEEEFDPAARLKAGSNSHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS- 532
Query: 224 KHSQQAIG 231
+QA+G
Sbjct: 533 AMGKQAMG 540
>Q1L5A5_9ERIC (tr|Q1L5A5) DNA-directed RNA polymerase (Fragment) OS=Linanthus
californicus GN=RPB2 PE=3 SV=1
Length = 733
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 108/225 (48%), Gaps = 19/225 (8%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ ++ P+++ L + G + + + + + K+F+NG WVG+
Sbjct: 62 GQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGI 121
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D ++ V +V + RD + KE+RI+ D GR RPL +VEN
Sbjct: 122 HRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVENQRLLIKK 181
Query: 135 -----LHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLV-AGVDKKQPLK 188
L + ++ + G + L+ K + I LV A +KK+
Sbjct: 182 RDIQALQQRESPEDGGW--HDLVSKGYIEYIDTEEEETTMISMTINDLVSARANKKEAYS 239
Query: 189 --YTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
YTHCE+ S +LG+ IIPF +H+ + R YQ+ +QA+G
Sbjct: 240 DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMG 283
>Q5U7W2_9HOMO (tr|Q5U7W2) DNA-directed RNA polymerase (Fragment) OS=Climacodon
septentrionalis GN=RPB2 PE=3 SV=1
Length = 886
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/238 (29%), Positives = 109/238 (45%), Gaps = 31/238 (13%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNL++ +S L P+I+ L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 308 GQACGLVKNLSLMSCISVGSLSAPVIEFLEEWGLESLEENAHSA-TPCTKVFVNGVWMGV 366
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN--LHKIK 139
D V +V + RD +++E+R++ DAGR+ RPL +VEN L K
Sbjct: 367 HRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLTITK 426
Query: 140 AF------KGGNYTFQSLLDKXXXXXXXXXXXXD---CSTAWGIKFLVAGVDKKQ----- 185
K Y + L+ C T ++ G+D Q
Sbjct: 427 KHISQLSDKESGYKWDDLIKGGVIELLDAEEEETVMICMTPEDLELARNGIDPLQQDAAD 486
Query: 186 ------------PLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
K+THCE+ S +LG+ IIPF +H+ + R YQ+ +QA+G
Sbjct: 487 IDMSVRLKTAQTAHKFTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMG 543
>Q2I5U4_9FUNG (tr|Q2I5U4) RNA polymerase II second largest subunit (Fragment)
OS=Polychytrium aggregatum GN=RPB2 PE=3 SV=1
Length = 504
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 106/231 (45%), Gaps = 31/231 (13%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNL++ V+ +P+++ L + GM+ + + + + KVFLNG WVG+
Sbjct: 63 GQACGLVKNLSLMSYVTVGSSSQPVMEFLEEWGMENIEETHGSSMTAATKVFLNGVWVGI 122
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVE----NLHK 137
D + + +V + RD +++E+R++ DAGRI RPL VVE L
Sbjct: 123 HRDPEVLSSSLKGLRRRLDVKPEVSVVRDVRERELRLYTDAGRISRPLFVVEEGKQRLML 182
Query: 138 IKAF-----KGGNYTFQSLLDKXXXX---XXXXXXXXDCST----------AWGIKFLVA 179
+A G T+ LL C T A GI+
Sbjct: 183 TRAIVQELSDAGELTWSRLLSDGYVEYIDTEEEETTMICMTPEDLAVSRRHALGIQEEEK 242
Query: 180 GVDKKQPLK--------YTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
++ LK +THCE+ S +LG+ IIPF +H+ + R +YQ+
Sbjct: 243 VIEMSARLKSTSLYTDTWTHCEIHPSMILGICASIIPFPDHNQSPRNVYQS 293
>B0WKE9_CULQU (tr|B0WKE9) DNA-directed RNA polymerase OS=Culex quinquefasciatus
GN=CpipJ_CPIJ007655 PE=3 SV=1
Length = 1176
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 102/220 (46%), Gaps = 12/220 (5%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G GLVKNLA+ +S P+++ L + M+ L + + + + K+F+NG WVG+
Sbjct: 518 GAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGI 577
Query: 82 CEDSNLFVAEXXXXXXXX-XXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------ 134
D +A +V + RD + +E+RI+ DAGRI RPLL+VEN
Sbjct: 578 HRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLR 637
Query: 135 ---LHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVDKKQPLKYTH 191
+ +K NY +Q L+ A L + YTH
Sbjct: 638 KNHVDMLKERDYNNYGWQVLVASGVVEYIDTLEEETVMIAMTPYDLKQDKEYAYCTTYTH 697
Query: 192 CELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
CE+ + +LG+ IIPF +H+ + R YQ+ +QA+G
Sbjct: 698 CEIHPAMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMG 736
>Q7QAK7_ANOGA (tr|Q7QAK7) DNA-directed RNA polymerase (Fragment) OS=Anopheles
gambiae GN=AGAP003648 PE=3 SV=3
Length = 1175
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 102/220 (46%), Gaps = 12/220 (5%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G GLVKNLA+ +S P+++ L + M+ L + + + + K+F+NG WVG+
Sbjct: 517 GAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGI 576
Query: 82 CEDSNLFVAEXXXXXXXX-XXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------ 134
D +A +V + RD + +E+RI+ DAGRI RPLL+VEN
Sbjct: 577 HRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLR 636
Query: 135 ---LHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVDKKQPLKYTH 191
+ +K NY +Q L+ A L + YTH
Sbjct: 637 KNHIDMLKDRDYNNYGWQVLVASGVVEYIDTLEEETVMIAMTPYDLKQDKEYAYCTTYTH 696
Query: 192 CELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
CE+ + +LG+ IIPF +H+ + R YQ+ +QA+G
Sbjct: 697 CEIHPAMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMG 735
>A9Q153_9AGAR (tr|A9Q153) RNA polymerase II second largest subunit (Fragment)
OS=Termitomyces microcarpus GN=RPB2 PE=3 SV=1
Length = 357
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 106/236 (44%), Gaps = 41/236 (17%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S P+++ L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 126 GQACGLVKNLALMSCISVGSYSAPVVEFLEEWGLESLEENAHST-TPCTKVFVNGVWMGV 184
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D V +V + RD ++KE+R++ DAGR+ RPL +VEN
Sbjct: 185 HRDPANLVKTIKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVENQQLALEK 244
Query: 135 -----LHKIKAFKGGNYTFQSLLD---------KXXXXXXXXXXXXDCSTAWGIKFLVAG 180
L K G Y ++SL+ + D T+ + +G
Sbjct: 245 KHVRWLSNRKDDNGAEYKWESLVKGGVVELLDAEEEETVMISMTPEDLETS---RLQQSG 301
Query: 181 V--------DKKQPLK-------YTHCELDMSFLLGLSCGIIPFANHDHARRVLYQ 221
V D LK +THCE+ S +LG+ IIPF +H+ + R YQ
Sbjct: 302 VNPAVNEDFDPAARLKAGINSHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 357
>A3QV04_9HYPO (tr|A3QV04) RNA polymerase II second largest subunit (Fragment)
OS=Neonectria ramulariae GN=RPB2 PE=3 SV=1
Length = 379
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 106/250 (42%), Gaps = 50/250 (20%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNL++ VS EPLI+ + + GM+ + + + K+F+NG WVGV
Sbjct: 129 GQACGLVKNLSLMCYVSVGSPSEPLIEFMINRGMEVVEEYEPLRYPHATKIFVNGTWVGV 188
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVV--ENLHKIK 139
+D V + +V + RD + +E ++F+DAGR++RP+ V E+ H
Sbjct: 189 HQDPKHLVGQVLDTRRKSYLQYEVSLVRDIRDREFKVFSDAGRVMRPVFTVQQEDDHDTG 248
Query: 140 AFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAW-------GIKFLVA------------- 179
KG + L++K W I++L A
Sbjct: 249 IAKGQLVLTKDLVNKLAKEQSEPSDDPASKIGWEGLIRAGAIEYLDAEEEETAMICMTPE 308
Query: 180 ------------------GVDKKQPLK---------YTHCELDMSFLLGLSCGIIPFANH 212
G D + LK YTHCE+ S +LG+ IIPF +H
Sbjct: 309 DLDFYRLQKAGIAVEEDMGDDPNRRLKTKTNPTTHMYTHCEIHPSMILGICASIIPFPDH 368
Query: 213 DHARRVLYQA 222
+ + R YQ+
Sbjct: 369 NQSPRNTYQS 378
>A3QRQ8_9HOMO (tr|A3QRQ8) RNA polymerase II second largest subunit (Fragment)
OS=Lactarius quieticolor GN=RPB2 PE=3 SV=1
Length = 241
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/239 (28%), Positives = 109/239 (45%), Gaps = 40/239 (16%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 4 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSST-LTTKVFVNGVWMGV 62
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE+
Sbjct: 63 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVEDQQLVLQK 122
Query: 135 -----LHKIKAFKGGNYTFQSL--------LDKXXXXXXXX-XXXXDCSTA----WGIKF 176
L++ +G ++ +Q L LD D TA GI+
Sbjct: 123 KHVRWLNQGTTDEGEDFKWQHLAKSGVIEMLDAEEEETVMICMTPEDLETARLQGRGIQS 182
Query: 177 LVA-------------GVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
+ + K P +THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 183 IASNNADFDPAARLKPSPGKSSPHIWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 241
>B7QNH8_IXOSC (tr|B7QNH8) DNA-directed RNA polymerase OS=Ixodes scapularis
GN=IscW_ISCW015181 PE=3 SV=1
Length = 1142
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 105/228 (46%), Gaps = 29/228 (12%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G GLVKNLA+ +S P+++ L + M+ L + + + E K+F+NG WVG+
Sbjct: 517 GHAVGLVKNLALMSYISVGSQPSPILEFLEEWSMENLEEIAPSAIAEATKIFVNGCWVGI 576
Query: 82 CEDSN-LFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------ 134
D + L +V + RD + +E+RI+ DAGRI RPLL+VE+
Sbjct: 577 HRDPDQLMNTLRKLRRQMDIIVSEVSMVRDIRDREIRIYTDAGRICRPLLIVEDQKLLLK 636
Query: 135 ---LHKIKAFKGGNYTFQSL--------LDKXXXXXXXXXXXXDCSTAWGIKFLVAGVDK 183
+ +K + NY++Q L +D D G +
Sbjct: 637 RRHIDSLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLSMTPDDLQDKGFAYCST---- 692
Query: 184 KQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
YTHCE+ S +LG+ IIPF +H+ + R YQ+ +QA+G
Sbjct: 693 -----YTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMG 734
>Q207G5_9APHY (tr|Q207G5) DNA-directed RNA polymerase (Fragment) OS=Sparassis
crispa GN=rpb2 PE=3 SV=1
Length = 900
Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 110/248 (44%), Gaps = 41/248 (16%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNL++ +S L P+I+ L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 309 GQACGLVKNLSLMACISVGSLSAPVIEFLEEWGLESLEENAHSAT-PCTKVFVNGVWMGV 367
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVENLHKI--- 138
D V +V + RD +++E+R++ DAGR+ RPL +VEN +
Sbjct: 368 HRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLLLTK 427
Query: 139 -------------KAFKGGNYTFQSLLDKXXXXXXXXXXXXD---CSTAWGI---KFLVA 179
KA G Y + +L+ C T + + +
Sbjct: 428 KHIDLLNRSAEEEKALPGSGYKWDNLIKSGVIELLDAEEEETVMICMTPEDLDNSRLQSS 487
Query: 180 GVDK----------------KQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQ 223
GVD +THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 488 GVDPHANDEDFDPAARLKAVTNAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS- 546
Query: 224 KHSQQAIG 231
+QA+G
Sbjct: 547 AMGKQAMG 554
>A3QUZ8_9HYPO (tr|A3QUZ8) RNA polymerase II second largest subunit (Fragment)
OS=Neonectria ramulariae GN=RPB2 PE=3 SV=1
Length = 378
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 106/250 (42%), Gaps = 50/250 (20%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNL++ VS EPLI+ + + GM+ + + + K+F+NG WVGV
Sbjct: 129 GQACGLVKNLSLMCYVSVVSPSEPLIEFMINRGMEVVEEYEPLRYPHATKIFVNGTWVGV 188
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVV--ENLHKIK 139
+D V + +V + RD + +E ++F+DAGR++RP+ V E+ H
Sbjct: 189 HQDPKHLVGQVLDTRRKSYLQYEVSLVRDIRDREFKVFSDAGRVMRPVFTVQQEDDHDTG 248
Query: 140 AFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAW-------GIKFLVA------------- 179
KG + L++K W I++L A
Sbjct: 249 IAKGQLVLTKDLVNKLAKEQSEPSDDPASKIGWEGLIRAGAIEYLDAEEEETAMICMTPE 308
Query: 180 ------------------GVDKKQPLK---------YTHCELDMSFLLGLSCGIIPFANH 212
G D + LK YTHCE+ S +LG+ IIPF +H
Sbjct: 309 DLDFYRLQKAGIAVEEDMGDDPNRRLKTKTNPTTHMYTHCEIHPSMILGICASIIPFPDH 368
Query: 213 DHARRVLYQA 222
+ + R YQ+
Sbjct: 369 NQSPRNTYQS 378
>A3QV34_9HYPO (tr|A3QV34) RNA polymerase II second largest subunit (Fragment)
OS=Neonectria sp. CBS 119528 GN=RPB2 PE=3 SV=1
Length = 381
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 106/250 (42%), Gaps = 50/250 (20%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNL++ VS EPLI+ + + GM+ + + + K+F+NG WVGV
Sbjct: 129 GQACGLVKNLSLMCYVSVGSPSEPLIEFMINRGMEVVEEYEPLRYPHATKIFVNGTWVGV 188
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVV--ENLHKIK 139
+D V + +V + RD + +E ++F+DAGR++RP+ V E+ H
Sbjct: 189 HQDPKHLVGQVLDTRRKSYLQYEVSLVRDIRDREFKVFSDAGRVMRPVFTVQQEDDHDTG 248
Query: 140 AFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAW-------GIKFLVA------------- 179
KG + L++K W I++L A
Sbjct: 249 IAKGQLVLTKDLVNKLAKEQSEPSDDPASKIGWEGLIRAGAIEYLDAEEEETAMICMTPE 308
Query: 180 ------------------GVDKKQPLK---------YTHCELDMSFLLGLSCGIIPFANH 212
G D + LK YTHCE+ S +LG+ IIPF +H
Sbjct: 309 DLDFYRLQKAGIAVEEDMGDDPNRRLKTKTNPTTHMYTHCEIHPSMILGICASIIPFPDH 368
Query: 213 DHARRVLYQA 222
+ + R YQ+
Sbjct: 369 NQSPRNTYQS 378
>A3QV33_9HYPO (tr|A3QV33) RNA polymerase II second largest subunit (Fragment)
OS=Nectria hederae GN=RPB2 PE=3 SV=1
Length = 381
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 106/250 (42%), Gaps = 50/250 (20%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNL++ VS EPLI+ + + GM+ + + + K+F+NG WVGV
Sbjct: 129 GQACGLVKNLSLMCYVSVGSPSEPLIEFMINRGMEVVEEYEPLRYPHATKIFVNGTWVGV 188
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVV--ENLHKIK 139
+D V + +V + RD + +E ++F+DAGR++RP+ V E+ H
Sbjct: 189 HQDPKHLVGQVLDTRRKSYLQYEVSLVRDIRDREFKVFSDAGRVMRPVFTVQQEDDHDTG 248
Query: 140 AFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAW-------GIKFLVA------------- 179
KG + L++K W I++L A
Sbjct: 249 IAKGQLVLTKDLVNKLAKEQSEPSDDPASKIGWEGLIRAGAIEYLDAEEEETAMICMTPE 308
Query: 180 ------------------GVDKKQPLK---------YTHCELDMSFLLGLSCGIIPFANH 212
G D + LK YTHCE+ S +LG+ IIPF +H
Sbjct: 309 DLDFYRLQKAGIAVEEDMGDDPNRRLKTKTNPTTHMYTHCEIHPSMILGICASIIPFPDH 368
Query: 213 DHARRVLYQA 222
+ + R YQ+
Sbjct: 369 NQSPRNTYQS 378
>A3QV14_9HYPO (tr|A3QV14) RNA polymerase II second largest subunit (Fragment)
OS=Neonectria coccinea GN=RPB2 PE=3 SV=1
Length = 381
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 106/250 (42%), Gaps = 50/250 (20%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNL++ VS EPLI+ + + GM+ + + + K+F+NG WVGV
Sbjct: 129 GQACGLVKNLSLMCYVSVGSPSEPLIEFMINRGMEVVEEYEPLRYPHATKIFVNGTWVGV 188
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVV--ENLHKIK 139
+D V + +V + RD + +E ++F+DAGR++RP+ V E+ H
Sbjct: 189 HQDPKHLVGQVLDTRRKSYLQYEVSLVRDIRDREFKVFSDAGRVMRPVFTVQQEDDHDTG 248
Query: 140 AFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAW-------GIKFLVA------------- 179
KG + L++K W I++L A
Sbjct: 249 IAKGQLVLTKDLVNKLAKEQSEPSDDPASKIGWEGLIRAGAIEYLDAEEEETAMICMTPE 308
Query: 180 ------------------GVDKKQPLK---------YTHCELDMSFLLGLSCGIIPFANH 212
G D + LK YTHCE+ S +LG+ IIPF +H
Sbjct: 309 DLDFYRLQKAGIAVEEDMGDDPNRRLKTKTNPTTHMYTHCEIHPSMILGICASIIPFPDH 368
Query: 213 DHARRVLYQA 222
+ + R YQ+
Sbjct: 369 NQSPRNTYQS 378
>A3QV08_9HYPO (tr|A3QV08) RNA polymerase II second largest subunit (Fragment)
OS=Neonectria sp. CBS 208.30 GN=RPB2 PE=3 SV=1
Length = 381
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 106/250 (42%), Gaps = 50/250 (20%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNL++ VS EPLI+ + + GM+ + + + K+F+NG WVGV
Sbjct: 129 GQACGLVKNLSLMCYVSVGSPSEPLIEFMINRGMEVVEEYEPLRYPHATKIFVNGTWVGV 188
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVV--ENLHKIK 139
+D V + +V + RD + +E ++F+DAGR++RP+ V E+ H
Sbjct: 189 HQDPKHLVGQVLDTRRKSYLQYEVSLVRDIRDREFKVFSDAGRVMRPVFTVQQEDDHDTG 248
Query: 140 AFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAW-------GIKFLVA------------- 179
KG + L++K W I++L A
Sbjct: 249 IAKGQLVLTKDLVNKLAKEQSEPSDDPASKIGWEGLIRAGAIEYLDAEEEETAMICMTPE 308
Query: 180 ------------------GVDKKQPLK---------YTHCELDMSFLLGLSCGIIPFANH 212
G D + LK YTHCE+ S +LG+ IIPF +H
Sbjct: 309 DLDFYRLQKAGIAVEEDMGDDPNRRLKTKTNPTTHMYTHCEIHPSMILGICASIIPFPDH 368
Query: 213 DHARRVLYQA 222
+ + R YQ+
Sbjct: 369 NQSPRNTYQS 378
>A3QV03_9HYPO (tr|A3QV03) RNA polymerase II second largest subunit (Fragment)
OS=Neonectria sp. CBS 125.24 GN=RPB2 PE=3 SV=1
Length = 381
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 106/250 (42%), Gaps = 50/250 (20%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNL++ VS EPLI+ + + GM+ + + + K+F+NG WVGV
Sbjct: 129 GQACGLVKNLSLMCYVSVGSPSEPLIEFMINRGMEVVEEYEPLRYPHATKIFVNGTWVGV 188
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVV--ENLHKIK 139
+D V + +V + RD + +E ++F+DAGR++RP+ V E+ H
Sbjct: 189 HQDPKHLVGQVLDTRRKSYLQYEVSLVRDIRDREFKVFSDAGRVMRPVFTVQQEDDHDTG 248
Query: 140 AFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAW-------GIKFLVA------------- 179
KG + L++K W I++L A
Sbjct: 249 IAKGQLVLTKDLVNKLAKEQSEPSDDPASKIGWEGLIRAGAIEYLDAEEEETAMICMTPE 308
Query: 180 ------------------GVDKKQPLK---------YTHCELDMSFLLGLSCGIIPFANH 212
G D + LK YTHCE+ S +LG+ IIPF +H
Sbjct: 309 DLDFYRLQKAGIAVEEDMGDDPNRRLKTKTNPTTHMYTHCEIHPSMILGICASIIPFPDH 368
Query: 213 DHARRVLYQA 222
+ + R YQ+
Sbjct: 369 NQSPRNTYQS 378
>A3QUZ7_9HYPO (tr|A3QUZ7) RNA polymerase II second largest subunit (Fragment)
OS=Neonectria coccinea var. faginata GN=RPB2 PE=3 SV=1
Length = 381
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 106/250 (42%), Gaps = 50/250 (20%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNL++ VS EPLI+ + + GM+ + + + K+F+NG WVGV
Sbjct: 129 GQACGLVKNLSLMCYVSVGSPSEPLIEFMINRGMEVVEEYEPLRYPHATKIFVNGTWVGV 188
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVV--ENLHKIK 139
+D V + +V + RD + +E ++F+DAGR++RP+ V E+ H
Sbjct: 189 HQDPKHLVGQVLDTRRKSYLQYEVSLVRDIRDREFKVFSDAGRVMRPVFTVQQEDDHDTG 248
Query: 140 AFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAW-------GIKFLVA------------- 179
KG + L++K W I++L A
Sbjct: 249 IAKGQLVLTKDLVNKLAKEQSEPSDDPASKIGWEGLIRAGAIEYLDAEEEETAMICMTPE 308
Query: 180 ------------------GVDKKQPLK---------YTHCELDMSFLLGLSCGIIPFANH 212
G D + LK YTHCE+ S +LG+ IIPF +H
Sbjct: 309 DLDFYRLQKAGIAVEEDMGDDPNRRLKTKTNPTTHMYTHCEIHPSMILGICASIIPFPDH 368
Query: 213 DHARRVLYQA 222
+ + R YQ+
Sbjct: 369 NQSPRNTYQS 378
>Q2I5T7_9FUNG (tr|Q2I5T7) DNA-directed RNA polymerase (Fragment) OS=Basidiobolus
ranarum GN=RPB2 PE=3 SV=1
Length = 720
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 105/247 (42%), Gaps = 43/247 (17%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S P++++L D M+ L + + + K+F+NG WVG+
Sbjct: 128 GQACGLVKNLALMSYISVGNPSAPVVEVLADWAMESLEQFSANNIADATKIFVNGVWVGI 187
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVENLH----- 136
D + +V I RD + KE+R + DAGR+ RPL VVEN
Sbjct: 188 HRDPGNLIETMRRFRRRVDISPEVSIVRDIRDKEIRFYTDAGRVCRPLYVVENQRITLRK 247
Query: 137 ------KIKAFKGGNYTFQSLL--------------------------DKXXXXXXXXXX 164
+++ + G + +Q L+ +
Sbjct: 248 EHVVALQMREYDGEPFGWQDLVVNGIVEYLDAEEEEVSMICMTPEDLAESRMYSKLGYIP 307
Query: 165 XXDCSTAWGIKFLVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQK 224
+ A +K A + +THCE+ S +LG IIPF +H+ + R YQ+
Sbjct: 308 EREADIASRVKSSAALITH----TWTHCEIHPSMILGTCASIIPFPDHNQSPRNTYQS-A 362
Query: 225 HSQQAIG 231
+QA+G
Sbjct: 363 MGKQAMG 369
>A3QRQ3_9HOMO (tr|A3QRQ3) RNA polymerase II second largest subunit (Fragment)
OS=Lactarius flexuosus GN=RPB2 PE=3 SV=1
Length = 245
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 108/242 (44%), Gaps = 43/242 (17%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 4 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSST-LTTKVFVNGVWMGV 62
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE+
Sbjct: 63 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVEDQQLVLQK 122
Query: 135 -----LHKIKAFKGGNYTFQSL--------LD----------------KXXXXXXXXXXX 165
L++ +G ++ +Q L LD +
Sbjct: 123 KHVRWLNQGTTDEGEDFKWQHLAKSGVIEMLDAEEEETVMICMTPEDLETARLQGRGMPS 182
Query: 166 XDCSTAWGIKFLVAGVDKKQPLK-----YTHCELDMSFLLGLSCGIIPFANHDHARRVLY 220
+ A G F A K P K +THCE+ S +LG+ IIPF +H+ + R Y
Sbjct: 183 TTTNNANGADFDPAARLKPSPGKSSPHIWTHCEIHPSMILGICASIIPFPDHNQSPRNTY 242
Query: 221 QA 222
Q+
Sbjct: 243 QS 244
>A9BK63_9CRYP (tr|A9BK63) DNA-directed RNA polymerase OS=Cryptophyta GN=HAN_1g51
PE=3 SV=1
Length = 1222
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 109/230 (47%), Gaps = 22/230 (9%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G +CGLV+NLA++ V+ P+++ L + ++ L D KL YK+F+NG W+G+
Sbjct: 550 GHSCGLVRNLALSAFVTIGSSTLPIMEFLEEFKIENLSDVKLEKLKFSYKIFVNGCWIGI 609
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVV-ENLHK--- 137
+ V ++ I D ++KE+RI D+GRI RPL+V+ E L K
Sbjct: 610 HDKPLNLVKNLRKGRRLGFLREEISISFDIKEKEIRISTDSGRICRPLIVLNEKLSKNTN 669
Query: 138 ---IKAF-------------KGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGV 181
IK F +++F LL + C + +K
Sbjct: 670 GTEIKTFLPLLKKSHLSKIKNDPSFSFHDLLKEGIVEFIDAEEEEICLISMFLKETFQKK 729
Query: 182 DKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
+ ++YTHCE+ S +LG+ IPF++H+ + R YQA +QAIG
Sbjct: 730 FRSLNIEYTHCEIHPSLILGVCGSFIPFSDHNQSPRNTYQAA-MGKQAIG 778
>D5JBY4_9HOMO (tr|D5JBY4) RNA polymerase II second largest subunit (Fragment)
OS=Lactarius aff. gerardii K.Das4062 GN=rpb2 PE=3 SV=1
Length = 241
Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 106/237 (44%), Gaps = 38/237 (16%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 4 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSSTI-TTKVFVNGVWMGV 62
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE+
Sbjct: 63 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVESQSLVLQK 122
Query: 135 -----LHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXD---CSTAWGIKF---------- 176
L++ +G ++ +Q L C T ++
Sbjct: 123 KHVRWLNQGHTDEGEDFKWQHLAKSGVIEMLDAEEEETVMICMTPEDLETQGRTHSSAKD 182
Query: 177 -----------LVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
L + K P ++THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 183 TNDPDFDPAARLKPTLGKSAPHEWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 239
>Q06CV3_9AGAR (tr|Q06CV3) RNA polymerase II second largest subunit (Fragment)
OS=Leucoagaricus barssii GN=rpb2 PE=3 SV=1
Length = 363
Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 103/238 (43%), Gaps = 42/238 (17%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S P+I+ L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 129 GQACGLVKNLALMSCISVGSYSAPVIEFLEEWGLESLEENAHST-SPCTKVFVNGVWMGV 187
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVENLHKIKAF 141
D V +V + RD ++KE+RI+ DAGR+ RPL +VEN +
Sbjct: 188 HRDPQNLVKTIKKLRRKDDISPEVSVVRDIREKELRIYTDAGRVCRPLFIVENQQLLLQK 247
Query: 142 K------------GGNYTFQSLLD---------KXXXXXXXXXXXXDCSTAWGIKFLVAG 180
K G Y ++ L+ + D + + AG
Sbjct: 248 KHIRWINNGCDDEGNEYKWEQLIKGGVIELLDAEEEETVMISMTPEDLENS---RLQAAG 304
Query: 181 VDK----------------KQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
VD +THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 305 VDPHANDGDFDPAARLKAGTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 362
>Q27S75_9AGAR (tr|Q27S75) DNA-directed RNA polymerase (Fragment) OS=Macrolepiota
dolichaula GN=rpb2 PE=3 SV=1
Length = 882
Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 110/247 (44%), Gaps = 43/247 (17%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S P+I+ L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 305 GQACGLVKNLALMSCISVGSYSAPVIEFLEEWGLESLEENAHSTTPCT-KVFVNGVWMGV 363
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVENLHKI--- 138
D V +V + RD ++KE+RI+ DAGR+ RPL +VEN +
Sbjct: 364 HRDPANLVKTIKKLRRKDDISPEVSVVRDIREKELRIYTDAGRVCRPLFIVENQQLLLQK 423
Query: 139 -------KAF--KGGNYTFQSLLD---------KXXXXXXXXXXXXDCSTAWGIKFLVAG 180
+F +G Y ++ L+ + D + + AG
Sbjct: 424 KHIRWLNSSFDEEGNEYKWEQLIKGGVIELLDAEEEETVMISMTPEDLENS---RLQAAG 480
Query: 181 VDK----------------KQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQK 224
VD +THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 481 VDPHANDGDFDPAARLKAGTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS-A 539
Query: 225 HSQQAIG 231
+QA+G
Sbjct: 540 MGKQAMG 546
>Q1KLL7_9AGAR (tr|Q1KLL7) DNA-directed RNA polymerase (Fragment) OS=Hemimycena
gracilis GN=rpb2 PE=3 SV=1
Length = 689
Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 114/246 (46%), Gaps = 42/246 (17%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S P+I+ L + G++ L ++ H++ + KVF+NG W+GV
Sbjct: 129 GQACGLVKNLALMSCISVGSYSAPVIEFLEEWGLESLEENAHSQ-NPCTKVFVNGVWMGV 187
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVENLH----- 136
D V +V + RD +++E+R++ADAGR+ RPL +VEN
Sbjct: 188 HRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYADAGRVCRPLFIVENQQLALQK 247
Query: 137 ------------KIKAFKGGNYTFQSLLD----KXXXXXXXXXXXXDCSTAW-------- 172
+ + FK G+ + +++ + D T+
Sbjct: 248 KHVRWITEGKDDQGEQFKWGDLVRRGIVELLDAEEEETVMISMTPEDLETSRLQQQGMNQ 307
Query: 173 -------GIKFLVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKH 225
L AG++ +THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 308 DEDEDFDPAARLKAGINSH---TWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS-AM 363
Query: 226 SQQAIG 231
+QA+G
Sbjct: 364 GKQAMG 369
>A3QRQ4_9HOMO (tr|A3QRQ4) RNA polymerase II second largest subunit (Fragment)
OS=Lactarius lignyotus GN=RPB2 PE=3 SV=1
Length = 244
Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 107/241 (44%), Gaps = 42/241 (17%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 5 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSST-LTTKVFVNGVWMGV 63
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE+
Sbjct: 64 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVEDQQLVLQK 123
Query: 135 -----LHKIKAFKGGNYTFQSL--------LDKXXXXXXXX-XXXXDCSTAW-------- 172
L++ A G + +Q L LD D TA
Sbjct: 124 KHVRWLNQGTADDGEEFKWQHLAKSGVIEMLDAEEEETVMICMTPEDLETARLQGRGMPS 183
Query: 173 ------GIKF-----LVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQ 221
G F L + K P +THCE+ S +LG+ IIPF +H+ + R YQ
Sbjct: 184 TTDNTNGADFDPAARLKPTLGKSSPHIWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 243
Query: 222 A 222
+
Sbjct: 244 S 244
>Q873V7_9AGAR (tr|Q873V7) DNA-directed RNA polymerase (Fragment)
OS=Chondrostereum purpureum PE=3 SV=2
Length = 770
Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 112/247 (45%), Gaps = 43/247 (17%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S P+I+ L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 313 GQACGLVKNLALMSCISVGSFSAPVIEFLEEWGLESLEENAHSSTPFT-KVFVNGVWMGV 371
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVENLHKI--- 138
D V +V + RD ++KE+R++ DAGR+ RPL +VEN +
Sbjct: 372 HRDPANLVKTIKKLRRRDDISHEVSVVRDIREKELRLYTDAGRVCRPLFIVENQQLVLQK 431
Query: 139 --------------KAFKGGNYTFQSLLD----KXXXXXXXXXXXXDCSTAWGIKFLVAG 180
+ FK N L++ + D ++ + +G
Sbjct: 432 KHVNWIAAGQDDTGEPFKWQNLVKSGLIELLDAEEEETVMISMTPEDLESS---RLQQSG 488
Query: 181 VDKKQP---------LK-------YTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQK 224
+ + P LK +THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 489 ISTQDPDAEFDPAARLKAGINAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS-A 547
Query: 225 HSQQAIG 231
+QA+G
Sbjct: 548 MGKQAMG 554
>Q5S3M6_GRIFR (tr|Q5S3M6) DNA-directed RNA polymerase (Fragment) OS=Grifola
frondosa GN=RPB2 PE=3 SV=1
Length = 719
Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 113/243 (46%), Gaps = 36/243 (14%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNL++ +S L P+I+ L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 135 GQACGLVKNLSLMSCISVGSLSAPVIEFLEEWGLESLEENAHSAT-PCTKVFVNGVWMGV 193
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVENL------ 135
D V +V + RD +++E+R++ DAGR+ RPL +VEN
Sbjct: 194 HRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLLLQK 253
Query: 136 -HKIKAFKGGN----YTFQSLLDKXXXXXXXXXXXXD---CSTAWGI---KFLVAGVDK- 183
H K KG + Y + +L+ C T + + +GVD
Sbjct: 254 KHIEKLVKGKDDELGYKWDNLIKDGVIELLDAEEEETVMICMTPDDLENSRLQASGVDPH 313
Query: 184 ------------KQPLK---YTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQ 228
K P +THCE+ S +LG+ IIPF +H+ + R YQ+ +Q
Sbjct: 314 ANEGEFDPGARLKAPTNAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAM-GKQ 372
Query: 229 AIG 231
A+G
Sbjct: 373 AMG 375
>Q1L6E5_9MYRT (tr|Q1L6E5) DNA-directed RNA polymerase (Fragment) OS=Callistemon
subulatus GN=RPB2 PE=3 SV=1
Length = 952
Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 110/224 (49%), Gaps = 16/224 (7%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ ++ P+++ L + G + + + + + K+F+NG WVG+
Sbjct: 416 GQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPVVIPQATKIFVNGCWVGI 475
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVE-------- 133
D ++ V +V + RD + KE+RI+ D GR RPL +VE
Sbjct: 476 HRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKK 535
Query: 134 -NLHKIKAFKGG--NYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLV-AGVDKKQPLK- 188
++H ++ +GG + + L+ K + I LV A ++ ++
Sbjct: 536 KDIHALQLREGGPDDVGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLNPEEAYSE 595
Query: 189 -YTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
YTHCE+ S +LG+ IIPF +H+ + R YQ+ +QA+G
Sbjct: 596 TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMG 638
>D5JC34_9HOMO (tr|D5JC34) RNA polymerase II second largest subunit (Fragment)
OS=Lactarius cf. gerardii var. fagicola
D.E.Desjardin3564 GN=rpb2 PE=3 SV=1
Length = 242
Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 105/238 (44%), Gaps = 39/238 (16%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 4 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSSTI-TTKVFVNGVWMGV 62
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE+
Sbjct: 63 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVESQQLVLQK 122
Query: 135 -----LHKIKAFKGGNYTFQSL--------LDKXXXXXXXXXXXXDCSTAWGIKFLVAGV 181
L++ G ++ +Q L LD + G A
Sbjct: 123 KHVRWLNQGSTDDGEDFKWQHLAKSGVIEMLDAEEEETVMICMTPEDLETQGRTHSSAKN 182
Query: 182 D-----------------KKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
D K P ++THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 183 DTNDPDFDPAARLKPTLGKSAPHEWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 240
>D5JBY0_9HOMO (tr|D5JBY0) RNA polymerase II second largest subunit (Fragment)
OS=Lactarius cf. gerardii var. fagicola J.Nuytinck07-029
GN=rpb2 PE=3 SV=1
Length = 242
Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 105/238 (44%), Gaps = 39/238 (16%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 4 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSSTI-TTKVFVNGVWMGV 62
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE+
Sbjct: 63 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVESQQLVLQK 122
Query: 135 -----LHKIKAFKGGNYTFQSL--------LDKXXXXXXXXXXXXDCSTAWGIKFLVAGV 181
L++ G ++ +Q L LD + G A
Sbjct: 123 KHVRWLNQGSTDDGEDFKWQHLAKSGVIEMLDAEEEETVMICMTPEDLETQGRTHSSAKN 182
Query: 182 D-----------------KKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
D K P ++THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 183 DTNDPDFDPAARLKPTLGKSAPHEWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 240
>D2W225_NAEGR (tr|D2W225) DNA-directed RNA polymerase OS=Naegleria gruberi
GN=NAEGRDRAFT_59892 PE=3 SV=1
Length = 1233
Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 108/229 (47%), Gaps = 23/229 (10%)
Query: 23 GENCGLVKNLAITGLVSTEILEPLIDILFD-CGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G CGLVKNLA+ ++ + I + D G++KL + + L++ KVFLNG W+GV
Sbjct: 569 GGACGLVKNLALMSYITVGTDKTHISKMLDELGINKLHELDESDLNKYTKVFLNGMWMGV 628
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVENLHK---- 137
+ V QV I RD +++EVRI+ D+GR RPL +V+ H
Sbjct: 629 HHTPDELVKHLRVLRRTGAVDMQVSIVRDVREREVRIWCDSGRCARPLFIVDRDHDTLFI 688
Query: 138 ----IKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLV-------AGVDKK-- 184
++A + + +LL++ A + LV G +K
Sbjct: 689 KNQHVQALRENTMNWDNLLEQGLVELIDTEEEESIMIAMDFRELVEKRSSANEGKSRKGG 748
Query: 185 --QPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
QP YTH E+ S +LG+ IIPF +H+ + R YQ+ +QA+G
Sbjct: 749 SRQP--YTHAEIHPSMILGILGSIIPFPDHNQSPRNTYQS-AMGKQAMG 794
>A3QRT0_9HOMO (tr|A3QRT0) RNA polymerase II second largest subunit (Fragment)
OS=Russula nigricans GN=RPB2 PE=3 SV=1
Length = 240
Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 69/238 (28%), Positives = 105/238 (44%), Gaps = 39/238 (16%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 4 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSST-LTTKVFVNGVWMGV 62
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVENLHKIKAF 141
D + +V I RD +++E+R++ D GR+ RPL +VE+ +
Sbjct: 63 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVEDQQLVLQK 122
Query: 142 K------------GGNYTFQ--------SLLDKXXXXXXXX-XXXXDCSTA------WGI 174
K G Y +Q LLD + TA +
Sbjct: 123 KHVRWLTQGTTDDGEEYKWQHLTKSGVIELLDAEEEETVMICMTPEELETARLHGRGMAV 182
Query: 175 KFLVAGVDKKQPLK----------YTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
VA D LK +THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 183 PTPVADFDPAARLKPSSENSAPHIWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 240
>Q5U7W9_COPCM (tr|Q5U7W9) DNA-directed RNA polymerase (Fragment) OS=Coprinus
comatus GN=RPB2 PE=3 SV=1
Length = 699
Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 109/247 (44%), Gaps = 43/247 (17%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S P+I+ L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 118 GQACGLVKNLALMSCISVGSYSAPVIEFLEEWGLESLEENAHSSTPCT-KVFVNGVWMGV 176
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D V +V + RD ++KE+RI+ DAGR+ RPL +VEN
Sbjct: 177 HRDPANLVKTIKKLRRKDDISPEVSVVRDIREKELRIYTDAGRVCRPLFIVENQQLLLQK 236
Query: 135 -----LHKIKAFKGGNYTFQSLLD---------KXXXXXXXXXXXXDCSTAWGIKFLVAG 180
L+ +G Y ++ L+ + D + + AG
Sbjct: 237 KHIRWLNNGYNDEGEEYKWEQLIKGGVIELLDAEEEETVMISMTPEDLENS---RLQAAG 293
Query: 181 VDK----------------KQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQK 224
VD +THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 294 VDTHANDGEFDPAARLKAGTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAM 353
Query: 225 HSQQAIG 231
+QA+G
Sbjct: 354 -GKQAMG 359
>A3QRS4_9HOMO (tr|A3QRS4) RNA polymerase II second largest subunit (Fragment)
OS=Russula aeruginea GN=RPB2 PE=4 SV=1
Length = 240
Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 105/239 (43%), Gaps = 40/239 (16%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 3 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSST-LTTKVFVNGVWMGV 61
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVENLHKIKAF 141
D + +V I RD +++E+R++ D GR+ RPL +VE+ +
Sbjct: 62 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVEDQQLVLQK 121
Query: 142 K------------GGNYTFQ--------SLLDKXXXXXXXXXXXXD-------------C 168
K G ++ +Q LLD +
Sbjct: 122 KHVRWLTQGTTDDGEDFKWQHLTKSGVIELLDAEEEETVMICMMPEELETARLHGRGMLS 181
Query: 169 STAWGIKF-----LVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
ST F L ++ P +THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 182 STKTAADFDPAARLKPSLENSAPHVWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 240
>A3QRQ9_9HOMO (tr|A3QRQ9) RNA polymerase II second largest subunit (Fragment)
OS=Lactarius citriolens GN=RPB2 PE=4 SV=1
Length = 244
Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 108/242 (44%), Gaps = 43/242 (17%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 3 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSST-LTTKVFVNGVWMGV 61
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE+
Sbjct: 62 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVEDQQLVLQK 121
Query: 135 -----LHKIKAFKGGNYTFQSL--------LDKXXXXXXXX-XXXXDCSTAW-------- 172
L++ +G ++ +Q L LD D TA
Sbjct: 122 KHVRWLNQGTTDEGEDFKWQHLAKSGVIEMLDAEEEETVMICMTPEDLETARLQGRGMPS 181
Query: 173 -------GIKFLVAGVDKKQPLK-----YTHCELDMSFLLGLSCGIIPFANHDHARRVLY 220
G F A K P K +THCE+ S +LG+ IIPF +H+ + R Y
Sbjct: 182 ATNIGANGADFDPAARLKPSPGKSAPHIWTHCEIHPSMILGICASIIPFPDHNQSPRNTY 241
Query: 221 QA 222
Q+
Sbjct: 242 QS 243
>A3QRR2_9HOMO (tr|A3QRR2) RNA polymerase II second largest subunit (Fragment)
OS=Lactarius subsericatus GN=RPB2 PE=3 SV=1
Length = 240
Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 106/237 (44%), Gaps = 38/237 (16%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 4 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSST-LTTKVFVNGVWMGV 62
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE+
Sbjct: 63 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVEDQQLVLQK 122
Query: 135 -----LHKIKAFKGGNYTFQSL--------LDKXXXXXXXX-XXXXDCSTA----WGIKF 176
L++ G ++ +Q L LD D TA GI
Sbjct: 123 RHVRWLNQGTTDDGEDFKWQHLTKSGVIEMLDAEEEETVMICMTPEDLETARLQGRGILN 182
Query: 177 LVAG-----------VDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
A K P +THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 183 TTAADFDPAARLKPTPGKSSPHIWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 239
>D5JC59_9HOMO (tr|D5JC59) RNA polymerase II second largest subunit (Fragment)
OS=Lactarius aff. uyedae G.Gates/D.Ratkowsky17-02-05
GN=rpb2 PE=3 SV=1
Length = 245
Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 107/241 (44%), Gaps = 42/241 (17%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 4 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSSTI-TTKVFVNGVWMGV 62
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE
Sbjct: 63 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVEAQQLVLQK 122
Query: 135 -----LHKIKAFKGGNYTFQSL--------LDKXXXXXXXXXXXXD--------CSTAWG 173
L++ G ++ +Q L LD + T G
Sbjct: 123 KHVRWLNQGNTDDGEDFKWQHLTKSGVIEMLDAEEEETVMICMTPEDLEAPRLQGRTQSG 182
Query: 174 IKF------------LVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQ 221
+K L + K P ++THCE+ S +LG+ IIPF +H+ + R YQ
Sbjct: 183 VKTDTNDPDFDPAARLKPTLGKSAPHEWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 242
Query: 222 A 222
+
Sbjct: 243 S 243
>D5JBX4_9HOMO (tr|D5JBX4) RNA polymerase II second largest subunit (Fragment)
OS=Lactarius baliophaeus GN=rpb2 PE=3 SV=1
Length = 245
Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 105/241 (43%), Gaps = 42/241 (17%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 4 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSST-LTTKVFVNGVWMGV 62
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE+
Sbjct: 63 HRDPTNLIETLKKLRRRDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVEDQQLVLQK 122
Query: 135 -----LHKIKAFKGGNYTFQSLL-----------------------DKXXXXXXXXXXXX 166
L++ +G ++ +Q L D
Sbjct: 123 KHLRWLNQGTTDEGEDFKWQHLTKSGVIEMLDAEEEETVMICMTPEDLETARIQGRGMPP 182
Query: 167 DCSTAWGIKF-----LVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQ 221
+ A F L + K P +THCE+ S +LG+ IIPF +H+ + R YQ
Sbjct: 183 PTTNANSADFDPAARLKPTLGKSSPHIWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 242
Query: 222 A 222
+
Sbjct: 243 S 243
>D5JBY7_9HOMO (tr|D5JBY7) RNA polymerase II second largest subunit (Fragment)
OS=Lactarius atrovelutinus GN=rpb2 PE=3 SV=1
Length = 241
Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 105/237 (44%), Gaps = 38/237 (16%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 4 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSSTI-TTKVFVNGVWMGV 62
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE
Sbjct: 63 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVEAQQLVLQK 122
Query: 135 -----LHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXD---CSTAWGIKF---------- 176
L++ +G ++ +Q L C T ++
Sbjct: 123 KHVRWLNQGHTDEGEDFKWQHLAKSGVIEMLDAEEEETVMICMTPEDLETQGRTHSSAKD 182
Query: 177 -----------LVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
L + K P ++THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 183 TNDPDFDPAARLKPTLGKSAPHEWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 239
>Q1ANE9_9BRYO (tr|Q1ANE9) RNA polymerase II second largest subunit (Fragment)
OS=Sphagnum sp. JL-2005 GN=RPB2 PE=2 SV=1
Length = 704
Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 103/225 (45%), Gaps = 20/225 (8%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ ++ + P+++ L + + + + + K+F+NG WVG+
Sbjct: 12 GQACGLVKNLALMAYITVGSAVNPILEFLEEWSTENFEEISPAVIPNSTKIFVNGSWVGI 71
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D L V +V + RD + KE+R++ D GR RPL +VE
Sbjct: 72 HRDPELLVRTLRQLRRQVDVNTEVGVVRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKK 131
Query: 135 -----LHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVDKKQP--- 186
L + +A + G Y L+ K + I LV + +
Sbjct: 132 SDVRALQQKEATESGWY---DLVSKGFIEYVDTEEEETTMISMTIADLVNARNNPEASFS 188
Query: 187 LKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
+ YTHCE+ S +LG+ IIPF +H+ + R YQ+ +QA+G
Sbjct: 189 VTYTHCEIHPSMILGVCGSIIPFPDHNQSPRNTYQS-AMGKQAMG 232
>D5JC12_9HOMO (tr|D5JC12) RNA polymerase II second largest subunit (Fragment)
OS=Lactarius aff. gerardii D.Stubbe07-390 GN=rpb2 PE=3
SV=1
Length = 241
Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 105/237 (44%), Gaps = 38/237 (16%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 4 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSSTI-TTKVFVNGVWMGV 62
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE
Sbjct: 63 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVEAQSLVLQK 122
Query: 135 -----LHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXD---CSTAWGIKF---------- 176
L++ +G ++ +Q L C T ++
Sbjct: 123 KHVRWLNQGHTDEGEDFKWQHLAKSGVIEMLDAEEEETVMICMTPEDLETQGRTNSSAKD 182
Query: 177 -----------LVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
L + K P ++THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 183 TTDPDFDPAARLKPTLGKSAPHEWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 239
>D5JC03_9HOMO (tr|D5JC03) RNA polymerase II second largest subunit (Fragment)
OS=Lactarius aff. gerardii H.T.Le317 GN=rpb2 PE=3 SV=1
Length = 241
Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 105/237 (44%), Gaps = 38/237 (16%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 4 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSSTI-TTKVFVNGVWMGV 62
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE
Sbjct: 63 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVEAQSLVLQK 122
Query: 135 -----LHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXD---CSTAWGIKF---------- 176
L++ +G ++ +Q L C T ++
Sbjct: 123 KHVRWLNQGHTDEGEDFKWQHLAKSGVIEMLDAEEEETVMICMTPEDLETQGRTNSSAKD 182
Query: 177 -----------LVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
L + K P ++THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 183 TTDPDFDPAARLKPTLGKSAPHEWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 239
>D5JBZ6_9HOMO (tr|D5JBZ6) RNA polymerase II second largest subunit (Fragment)
OS=Lactarius aff. gerardii A.Verbeken/R.Walleyn04-088
GN=rpb2 PE=3 SV=1
Length = 241
Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 105/237 (44%), Gaps = 38/237 (16%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 4 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSSTI-TTKVFVNGVWMGV 62
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE
Sbjct: 63 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVEAQSLVLQK 122
Query: 135 -----LHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXD---CSTAWGIKF---------- 176
L++ +G ++ +Q L C T ++
Sbjct: 123 KHVRWLNQGHTDEGEDFKWQHLAKSGVIEMLDAEEEETVMICMTPEDLETQGRTNSSAKD 182
Query: 177 -----------LVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
L + K P ++THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 183 TTDPDFDPAARLKPTLGKSAPHEWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 239
>A3QUZ2_9HYPO (tr|A3QUZ2) RNA polymerase II second largest subunit (Fragment)
OS=Neonectria ditissima GN=RPB2 PE=3 SV=1
Length = 381
Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 106/250 (42%), Gaps = 50/250 (20%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNL++ VS EPLI+ + + GM+ + + + K+F+NG WVGV
Sbjct: 129 GQACGLVKNLSLMCYVSVGSPSEPLIEFMINRGMEVVEEYEPLRYPHATKIFVNGTWVGV 188
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVV--ENLHKIK 139
+D V + +V + RD + +E ++F+DAGR++RP+ V E+ H+
Sbjct: 189 HQDPKHLVGQVLDTRRKSYLQYEVSLVRDIRDREFKVFSDAGRVMRPVFTVQQEDDHETG 248
Query: 140 AFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAW-------GIKFLVA------------- 179
KG + L++K W I++L A
Sbjct: 249 IAKGQLVLTKDLVNKLAKEQSEPSDDPASKIGWEGLIRAGAIEYLDAEEEETAMICMTPE 308
Query: 180 ------------GVD-------------KKQPLK--YTHCELDMSFLLGLSCGIIPFANH 212
VD K P YTHCE+ S +LG+ IIPF +H
Sbjct: 309 DLDFYRLQKAGIAVDEDIGDNPNGRLKTKTNPTTHMYTHCEIHPSMILGICASIIPFPDH 368
Query: 213 DHARRVLYQA 222
+ + R YQ+
Sbjct: 369 NQSPRNTYQS 378
>Q5S3L6_9AGAR (tr|Q5S3L6) DNA-directed RNA polymerase (Fragment) OS=Xerula
radicata GN=RPB2 PE=3 SV=1
Length = 669
Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 72/247 (29%), Positives = 115/247 (46%), Gaps = 43/247 (17%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S P+I+ L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 113 GQACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSTTPFT-KVFVNGVWMGV 171
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D V +V + RD ++KE+R++ DAGR+ RPL +VE+
Sbjct: 172 HRDPANLVNTIKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVEDQQLALQK 231
Query: 135 -----LHKIKAFKGGNYTFQS--------LLDKXXXXXXXXXXXXD------------CS 169
+ + K +GG Y ++ LLD + +
Sbjct: 232 KHVKWILQGKDDEGGEYKWEQLIKTGIVELLDAEEEETVMISMTPEDLETSRLQQNGLDA 291
Query: 170 TAWGIKF-----LVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQK 224
TA +F L AG++ +THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 292 TANDGEFDPAARLKAGINAH---TWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS-A 347
Query: 225 HSQQAIG 231
+QA+G
Sbjct: 348 MGKQAMG 354
>Q2I5S2_9FUNG (tr|Q2I5S2) DNA-directed RNA polymerase (Fragment) OS=Synchytrium
macrosporum GN=RPB2 PE=3 SV=1
Length = 710
Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 109/230 (47%), Gaps = 22/230 (9%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNL++ +S + LI+ L + M++ + + +++++ K+F+NG W+G+
Sbjct: 130 GQACGLVKNLSLMATISVGSPHDHLIEFLDEEAMERFTEVSASQIEDACKIFINGSWIGI 189
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVENLHK---- 137
D + V ++ I D + KE+RIFADAGRI RPL +V++ +
Sbjct: 190 HRDPAMIVQYLRELRRGSSIPREMSIVWDVRDKEIRIFADAGRIQRPLFIVDDQEQRLKW 249
Query: 138 ------IKAFKGGNYTFQ--SLLDKXXXXXXXXXXXXDCSTAWGIKFLVA-----GVDKK 184
++ F + F+ +D+ A L D +
Sbjct: 250 SLKPEVVQDFHANQHNFEWDEFVDRGVIELLDTEEEETVMIAMTPHDLSVHRSHMAEDYE 309
Query: 185 QPL---KYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
+ +YTHCE+ S +LG+ IIPF +H+ R YQ+ +QA+G
Sbjct: 310 GEVNIHRYTHCEIHPSMILGVCASIIPFPDHNQPPRNTYQSAM-GKQAMG 358
>D5JBX9_9HOMO (tr|D5JBX9) RNA polymerase II second largest subunit (Fragment)
OS=Lactarius cyanescens GN=rpb2 PE=3 SV=1
Length = 245
Score = 94.7 bits (234), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 103/241 (42%), Gaps = 42/241 (17%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 4 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSST-LTTKVFVNGVWMGV 62
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE+
Sbjct: 63 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVEDQQLVLQK 122
Query: 135 -----LHKIKAFKGGNYTFQSLL-----------------------DKXXXXXXXXXXXX 166
L++ G + +Q L D
Sbjct: 123 KHVRWLNQGTTDDGEEFKWQHLAKSGVIEMLDAEEEETVMICMTPEDLETARLQGRGMPS 182
Query: 167 DCSTAWGIKF-----LVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQ 221
A G F L + K P +THCE+ S +LG+ IIPF +H+ + R YQ
Sbjct: 183 TADNANGADFDPAARLKPTLGKSSPHIWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 242
Query: 222 A 222
+
Sbjct: 243 S 243
>D5JBZ1_9HOMO (tr|D5JBZ1) RNA polymerase II second largest subunit (Fragment)
OS=Lactarius aff. gerardii M.Christensen04-259 GN=rpb2
PE=3 SV=1
Length = 241
Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 105/237 (44%), Gaps = 38/237 (16%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 4 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSSTI-TTKVFVNGVWMGV 62
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE
Sbjct: 63 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVEAQSLVLQK 122
Query: 135 -----LHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXD---CSTAWGIKF---------- 176
L++ +G ++ +Q L C T ++
Sbjct: 123 KHVRWLNQGHTDEGEDFKWQHLAKSGVIEMLDAEEEETVMICMTPEDLETQGRTNSSAKD 182
Query: 177 -----------LVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
L + K P ++THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 183 TADPDFDPAARLKPTLGKSAPHEWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 239
>Q2HXY8_9AGAR (tr|Q2HXY8) RNA polymerase II second largest subunit (Fragment)
OS=Nolanea sericea GN=RPB2 PE=3 SV=2
Length = 358
Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 106/234 (45%), Gaps = 36/234 (15%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S P+I+ L + G++ L ++ H++ KVF+NG W+GV
Sbjct: 126 GQACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSQ-TPCTKVFVNGVWMGV 184
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVENLHKIKAF 141
D V +V + RD ++KE+R++ DAGR+ RPL +VEN +
Sbjct: 185 HRDPANLVKTIKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVENQQLVLQK 244
Query: 142 K------------GGNYTFQSLLD---------KXXXXXXXXXXXXDCSTAW----GIKF 176
K G Y ++ L+ + D T+ G+
Sbjct: 245 KHIRWLSEGSNDDGEEYKWEQLIKGGVVELLDAEEEETVMISMTPEDLGTSRLQQSGVDT 304
Query: 177 LV--AGVDKKQPLK-------YTHCELDMSFLLGLSCGIIPFANHDHARRVLYQ 221
V A D LK +THCE+ S +LG+ IIPF +H+ + R YQ
Sbjct: 305 TVNDAEFDPAARLKAGINSHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 358
>D5JBX7_9HOMO (tr|D5JBX7) RNA polymerase II second largest subunit (Fragment)
OS=Lactarius aff. gerardii D.Stubbe06-247 GN=rpb2 PE=3
SV=1
Length = 240
Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 105/236 (44%), Gaps = 37/236 (15%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 4 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSSTI-TTKVFVNGVWMGV 62
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE+
Sbjct: 63 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVESQSLVLQK 122
Query: 135 -----LHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXD---CSTAWGIKF---------- 176
L++ G ++ +Q L C T ++
Sbjct: 123 KHVRWLNQGHNDDGEDFKWQHLAKSGVIEMLDAEEEETVMICMTPEDLETQGRNSSAKDT 182
Query: 177 ----------LVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
L + K P ++THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 183 NDPDFDPAARLKPTLGKSAPHEWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 238
>D5JBX6_9HOMO (tr|D5JBX6) RNA polymerase II second largest subunit (Fragment)
OS=Lactarius aff. gerardii D.Stubbe06-230 GN=rpb2 PE=3
SV=1
Length = 240
Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 105/236 (44%), Gaps = 37/236 (15%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 4 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSSTI-TTKVFVNGVWMGV 62
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE+
Sbjct: 63 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVESQSLVLQK 122
Query: 135 -----LHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXD---CSTAWGIKF---------- 176
L++ G ++ +Q L C T ++
Sbjct: 123 KHVRWLNQGHNDDGEDFKWQHLAKSGVIEMLDAEEEETVMICMTPEDLETQGRNSSAKDT 182
Query: 177 ----------LVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
L + K P ++THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 183 NDPDFDPAARLKPTLGKSAPHEWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 238
>B4DHJ3_HUMAN (tr|B4DHJ3) DNA-directed RNA polymerase OS=Homo sapiens PE=2 SV=1
Length = 1167
Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 109/225 (48%), Gaps = 23/225 (10%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G GLVKNLA+ +S P+++ L + M+ L + + + + K+F+NG WVG+
Sbjct: 510 GHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGI 569
Query: 82 CEDS-NLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVE------- 133
+D L +V + RD +++E+RI+ DAGRI RPLL+VE
Sbjct: 570 HKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLK 629
Query: 134 --NLHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVDKKQP----- 186
++ ++K + NY++Q L+ D + + D ++
Sbjct: 630 KRHIDQLKEREYNNYSWQDLV------ASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYC 683
Query: 187 LKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
YTHCE+ S +LG+ IIPF +H+ + R YQ+ +QA+G
Sbjct: 684 STYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMG 727
>C9J2Y9_HUMAN (tr|C9J2Y9) DNA-directed RNA polymerase OS=Homo sapiens GN=POLR2B
PE=3 SV=2
Length = 1167
Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 109/225 (48%), Gaps = 23/225 (10%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G GLVKNLA+ +S P+++ L + M+ L + + + + K+F+NG WVG+
Sbjct: 510 GHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGI 569
Query: 82 CEDS-NLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVE------- 133
+D L +V + RD +++E+RI+ DAGRI RPLL+VE
Sbjct: 570 HKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLK 629
Query: 134 --NLHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVDKKQP----- 186
++ ++K + NY++Q L+ D + + D ++
Sbjct: 630 KRHIDQLKEREYNNYSWQDLV------ASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYC 683
Query: 187 LKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
YTHCE+ S +LG+ IIPF +H+ + R YQ+ +QA+G
Sbjct: 684 STYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMG 727
>D5JC70_9HOMO (tr|D5JC70) RNA polymerase II second largest subunit (Fragment)
OS=Lactarius aff. ochrogalactus G.Gates07-02-04 GN=rpb2
PE=3 SV=1
Length = 245
Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 106/241 (43%), Gaps = 42/241 (17%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 4 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSSTI-TTKVFVNGVWMGV 62
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE+
Sbjct: 63 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVESQQLVLQK 122
Query: 135 -----LHKIKAFKGGNYTFQSL--------LDKXXXXXXXXXXXXD--------CSTAWG 173
L++ G ++ +Q L LD + T G
Sbjct: 123 KHVRWLNQGSTDDGEDFKWQHLAKSGVIEMLDAEEEETVMICMTPEDLEAPRLQGRTQSG 182
Query: 174 IKFLVAGVD------------KKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQ 221
K D K P ++THCE+ S +LG+ IIPF +H+ + R YQ
Sbjct: 183 AKNATNDPDFDPAARLKPTLGKSAPHEWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 242
Query: 222 A 222
+
Sbjct: 243 S 243
>D5JC66_9HOMO (tr|D5JC66) RNA polymerase II second largest subunit (Fragment)
OS=Lactarius aff. ochrogalactus G.Gates29-01-02 GN=rpb2
PE=3 SV=1
Length = 245
Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 106/241 (43%), Gaps = 42/241 (17%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 4 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSSTI-TTKVFVNGVWMGV 62
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE+
Sbjct: 63 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVESQQLVLQK 122
Query: 135 -----LHKIKAFKGGNYTFQSL--------LDKXXXXXXXXXXXXD--------CSTAWG 173
L++ G ++ +Q L LD + T G
Sbjct: 123 KHVRWLNQGSTDDGEDFKWQHLAKSGVIEMLDAEEEETVMICMTPEDLEAPRLQGRTQSG 182
Query: 174 IKFLVAGVD------------KKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQ 221
K D K P ++THCE+ S +LG+ IIPF +H+ + R YQ
Sbjct: 183 AKNATNDPDFDPAARLKPTLGKSAPHEWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 242
Query: 222 A 222
+
Sbjct: 243 S 243
>D5JC60_9HOMO (tr|D5JC60) RNA polymerase II second largest subunit (Fragment)
OS=Lactarius aff. ochrogalactus P.Leonard35607 GN=rpb2
PE=3 SV=1
Length = 245
Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 106/241 (43%), Gaps = 42/241 (17%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 4 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSSTI-TTKVFVNGVWMGV 62
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE+
Sbjct: 63 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVESQQLVLQK 122
Query: 135 -----LHKIKAFKGGNYTFQSL--------LDKXXXXXXXXXXXXD--------CSTAWG 173
L++ G ++ +Q L LD + T G
Sbjct: 123 KHVRWLNQGSTDDGEDFKWQHLAKSGVIEMLDAEEEETVMICMTPEDLEAPRLQGRTQSG 182
Query: 174 IKFLVAGVD------------KKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQ 221
K D K P ++THCE+ S +LG+ IIPF +H+ + R YQ
Sbjct: 183 AKNATNDPDFDPAARLKPTLGKSAPHEWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 242
Query: 222 A 222
+
Sbjct: 243 S 243
>Q1KLA0_9AGAR (tr|Q1KLA0) RNA polymerase II second largest subunit (Fragment)
OS=Rhodocybe mundula GN=rpb2 PE=3 SV=1
Length = 423
Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 111/247 (44%), Gaps = 43/247 (17%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S P+I+ L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 130 GQACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSS-TPCTKVFVNGVWMGV 188
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVENLHKIKAF 141
D V +V I RD ++KE+R++ DAGR+ RPL +VEN I
Sbjct: 189 HRDPANLVKTLKKLRRKDDISPEVSIVRDIREKELRLYTDAGRVCRPLFIVENQELILKK 248
Query: 142 K------------GGNYTFQSLLD---------KXXXXXXXXXXXXDCSTAWGIKFLVAG 180
K G Y ++ L+ + D T+ + +G
Sbjct: 249 KHVRWLNNGVDDSGEEYKWEHLVKGGVVELLDAEEEETVMISMTPEDLETS---RLQQSG 305
Query: 181 VDKKQ------PL----------KYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQK 224
+ +Q P +THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 306 IHPEQNDSDFDPAARLKAGINSHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAM 365
Query: 225 HSQQAIG 231
+QA+G
Sbjct: 366 -GKQAMG 371
>D5JC42_9HOMO (tr|D5JC42) RNA polymerase II second largest subunit (Fragment)
OS=Lactarius montoyae GN=rpb2 PE=3 SV=1
Length = 245
Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 107/241 (44%), Gaps = 42/241 (17%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 4 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSST-LTTKVFVNGVWMGV 62
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE+
Sbjct: 63 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVEDQQLVLQK 122
Query: 135 -----LHKIKAFKGGNYTFQSL--------LDKXXXXXXXX-XXXXDCSTAW-------- 172
L++ G ++ +Q L LD D TA
Sbjct: 123 KHVRWLNQGTTDDGEDFKWQHLAKSGVIEMLDAEEEETVMICMTPEDLETARLQGRGMPS 182
Query: 173 ------GIKF-----LVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQ 221
G F L + K P +THCE+ S +LG+ IIPF +H+ + R YQ
Sbjct: 183 XTDNTNGADFDPAARLKPTLGKSSPHIWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 242
Query: 222 A 222
+
Sbjct: 243 S 243
>D5JC61_9HOMO (tr|D5JC61) RNA polymerase II second largest subunit (Fragment)
OS=Lactarius aff. uyedae H.T.Le457 GN=rpb2 PE=3 SV=1
Length = 243
Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 107/241 (44%), Gaps = 42/241 (17%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 4 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSSTI-TTKVFVNGVWMGV 62
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE+
Sbjct: 63 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVESQQLVLQK 122
Query: 135 -----LHKIKAFKGGNYTFQSL--------LDKXXXXXXXXXXXXD--------CSTAWG 173
L++ G ++ +Q L LD + T G
Sbjct: 123 KHVRWLNQGSTDDGEDFKWQHLTKSGVIEMLDAEEEETVMICMTPEDLEAPRLQGRTQSG 182
Query: 174 IKF------------LVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQ 221
K L + K P ++THCE+ S +LG+ IIPF +H+ + R YQ
Sbjct: 183 AKTDTNDPDFDPAARLKPTLGKSAPHEWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 242
Query: 222 A 222
+
Sbjct: 243 S 243
>D5JC50_9HOMO (tr|D5JC50) RNA polymerase II second largest subunit (Fragment)
OS=Lactarius picinus GN=rpb2 PE=3 SV=1
Length = 245
Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 107/241 (44%), Gaps = 42/241 (17%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 4 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSST-LTTKVFVNGVWMGV 62
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE+
Sbjct: 63 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVEDQQLVLQK 122
Query: 135 -----LHKIKAFKGGNYTFQSL--------LDKXXXXXXXX-XXXXDCSTAW-------- 172
L++ G ++ +Q L LD D TA
Sbjct: 123 KHVRWLNQGTTDDGEDFKWQHLAKSGVIEMLDAEEEETVMICMTPEDLETARLQGRGMPS 182
Query: 173 ------GIKF-----LVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQ 221
G F L + K P +THCE+ S +LG+ IIPF +H+ + R YQ
Sbjct: 183 TTDNTNGADFDPAARLKPTLGKSAPHIWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 242
Query: 222 A 222
+
Sbjct: 243 S 243
>B4DR40_HUMAN (tr|B4DR40) DNA-directed RNA polymerase OS=Homo sapiens PE=2 SV=1
Length = 1083
Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 109/225 (48%), Gaps = 23/225 (10%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G GLVKNLA+ +S P+++ L + M+ L + + + + K+F+NG WVG+
Sbjct: 426 GHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGI 485
Query: 82 CEDS-NLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVE------- 133
+D L +V + RD +++E+RI+ DAGRI RPLL+VE
Sbjct: 486 HKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLK 545
Query: 134 --NLHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVDKKQP----- 186
++ ++K + NY++Q L+ D + + D ++
Sbjct: 546 KRHIDQLKEREYNNYSWQDLV------ASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYC 599
Query: 187 LKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
YTHCE+ S +LG+ IIPF +H+ + R YQ+ +QA+G
Sbjct: 600 STYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMG 643
>A7XIK9_CORMI (tr|A7XIK9) RNA polymerase II subunit (Fragment) OS=Cordyceps
militaris GN=RPB2 PE=3 SV=1
Length = 271
Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 112/260 (43%), Gaps = 52/260 (20%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNL++ VS EPLID + + GM+ + + + K+F+NG WVGV
Sbjct: 12 GQACGLVKNLSLMCYVSVGSPAEPLIDFMINRGMEVIEEYEPLRYPHATKIFVNGTWVGV 71
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVE--NLHKIK 139
+D V + +V + RD + +E +IF+DAGR++RP+ V+ N +
Sbjct: 72 HQDPKHLVDQVFDTRRKSYLQYEVSLIRDIRDQEFKIFSDAGRVMRPVFTVQQKNDPETG 131
Query: 140 AFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAW-------GIKFLVA------------- 179
KG + L++K + W I++L A
Sbjct: 132 LEKGQLGLTKDLVNKLAQEQADPPDDSELKMGWEVLIKAGAIEYLDAEEEETSMICMTPE 191
Query: 180 -------------------GVDKKQPLK---------YTHCELDMSFLLGLSCGIIPFAN 211
G D + LK YTHCE+ S +LG+ IIPF +
Sbjct: 192 DLELYRLQKAGLSVDDDHEGGDLNKRLKTKTNPTTHMYTHCEIHPSMILGICASIIPFPD 251
Query: 212 HDHARRVLYQAQKHSQQAIG 231
H+ + R YQ+ +QA+G
Sbjct: 252 HNQSPRNTYQS-AMGKQAMG 270
>D2H8J2_AILME (tr|D2H8J2) DNA-directed RNA polymerase (Fragment) OS=Ailuropoda
melanoleuca GN=PANDA_006563 PE=3 SV=1
Length = 1168
Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 109/225 (48%), Gaps = 23/225 (10%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G GLVKNLA+ +S P+++ L + M+ L + + + + K+F+NG WVG+
Sbjct: 511 GHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGI 570
Query: 82 CEDS-NLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVE------- 133
+D L +V + RD +++E+RI+ DAGRI RPLL+VE
Sbjct: 571 HKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLK 630
Query: 134 --NLHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVDKKQP----- 186
++ ++K + NY++Q L+ D + + D ++
Sbjct: 631 KRHIDQLKEREYNNYSWQDLV------ASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYC 684
Query: 187 LKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
YTHCE+ S +LG+ IIPF +H+ + R YQ+ +QA+G
Sbjct: 685 STYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMG 728
>A5PJW8_BOVIN (tr|A5PJW8) DNA-directed RNA polymerase OS=Bos taurus GN=POLR2B
PE=2 SV=1
Length = 1174
Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 109/225 (48%), Gaps = 23/225 (10%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G GLVKNLA+ +S P+++ L + M+ L + + + + K+F+NG WVG+
Sbjct: 517 GHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGI 576
Query: 82 CEDS-NLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVE------- 133
+D L +V + RD +++E+RI+ DAGRI RPLL+VE
Sbjct: 577 HKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLK 636
Query: 134 --NLHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVDKKQP----- 186
++ ++K + NY++Q L+ D + + D ++
Sbjct: 637 KRHIDQLKEREYNNYSWQDLV------ASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYC 690
Query: 187 LKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
YTHCE+ S +LG+ IIPF +H+ + R YQ+ +QA+G
Sbjct: 691 STYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMG 734
>C9J4M6_HUMAN (tr|C9J4M6) DNA-directed RNA polymerase OS=Homo sapiens GN=POLR2B
PE=3 SV=2
Length = 1099
Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 109/225 (48%), Gaps = 23/225 (10%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G GLVKNLA+ +S P+++ L + M+ L + + + + K+F+NG WVG+
Sbjct: 442 GHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGI 501
Query: 82 CEDS-NLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVE------- 133
+D L +V + RD +++E+RI+ DAGRI RPLL+VE
Sbjct: 502 HKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLK 561
Query: 134 --NLHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVDKKQP----- 186
++ ++K + NY++Q L+ D + + D ++
Sbjct: 562 KRHIDQLKEREYNNYSWQDLV------ASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYC 615
Query: 187 LKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
YTHCE+ S +LG+ IIPF +H+ + R YQ+ +QA+G
Sbjct: 616 STYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMG 659
>B4DH29_HUMAN (tr|B4DH29) DNA-directed RNA polymerase OS=Homo sapiens PE=2 SV=1
Length = 1099
Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 109/225 (48%), Gaps = 23/225 (10%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G GLVKNLA+ +S P+++ L + M+ L + + + + K+F+NG WVG+
Sbjct: 442 GHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGI 501
Query: 82 CEDS-NLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVE------- 133
+D L +V + RD +++E+RI+ DAGRI RPLL+VE
Sbjct: 502 HKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLK 561
Query: 134 --NLHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVDKKQP----- 186
++ ++K + NY++Q L+ D + + D ++
Sbjct: 562 KRHIDQLKEREYNNYSWQDLV------ASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYC 615
Query: 187 LKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
YTHCE+ S +LG+ IIPF +H+ + R YQ+ +QA+G
Sbjct: 616 STYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMG 659
>D5JC53_9HOMO (tr|D5JC53) RNA polymerase II second largest subunit (Fragment)
OS=Lactarius aff. ochrogalactus P.Leonard34204 GN=rpb2
PE=3 SV=1
Length = 245
Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 108/244 (44%), Gaps = 48/244 (19%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 4 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSSTI-TTKVFVNGVWMGV 62
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE+
Sbjct: 63 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVESQQLVLQK 122
Query: 135 -----LHKIKAFKGGNYTFQSL--------LD-----------------------KXXXX 158
L++ G ++ +Q L LD +
Sbjct: 123 KHVRWLNQGSTDDGEDFKWQHLAKSGVIEMLDAEEEETVMICMTPEDLEAPRLQGRTQSG 182
Query: 159 XXXXXXXXDCSTAWGIKFLVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRV 218
D A +K ++ K P ++THCE+ S +LG+ IIPF +H+ + R
Sbjct: 183 AKNATNDPDFDPAARLKPILG---KSAPHEWTHCEIHPSMILGICASIIPFPDHNQSPRN 239
Query: 219 LYQA 222
YQ+
Sbjct: 240 TYQS 243
>D5JC39_9HOMO (tr|D5JC39) RNA polymerase II second largest subunit (Fragment)
OS=Lactarius cf. gerardii A.E.Franco-Molano27-6-89
GN=rpb2 PE=3 SV=1
Length = 241
Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 107/240 (44%), Gaps = 44/240 (18%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 4 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSSTI-TTKVFVNGVWMGV 62
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE
Sbjct: 63 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVEAQSLVLQK 122
Query: 135 -----LHKIKAFKGGNYTFQSL--------LDKX-------------------XXXXXXX 162
L++ +G ++ +Q L LD
Sbjct: 123 KHVRWLNQGHTDEGEDFKWQHLAKSGVIEMLDAEEEETVMICMTPEDLETQGRTNSSAKD 182
Query: 163 XXXXDCSTAWGIKFLVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
D A +K ++ K P ++THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 183 TNDPDFDPAARLKPILG---KSAPHEWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 239
>D5JC31_9HOMO (tr|D5JC31) RNA polymerase II second largest subunit (Fragment)
OS=Lactarius cf. gerardii A.Verbeken05-373 GN=rpb2 PE=3
SV=1
Length = 241
Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 107/240 (44%), Gaps = 44/240 (18%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 4 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSSTI-TTKVFVNGVWMGV 62
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE
Sbjct: 63 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVEAQSLVLQK 122
Query: 135 -----LHKIKAFKGGNYTFQSL--------LDKX-------------------XXXXXXX 162
L++ +G ++ +Q L LD
Sbjct: 123 KHVRWLNQGHTDEGEDFKWQHLAKSGVIEMLDAEEEETVMICMTPEDLETQGRTNSSAKD 182
Query: 163 XXXXDCSTAWGIKFLVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
D A +K ++ K P ++THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 183 TNDPDFDPAARLKPILG---KSAPHEWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 239
>D5JC21_9HOMO (tr|D5JC21) RNA polymerase II second largest subunit (Fragment)
OS=Lactarius cf. gerardii var. subrubescens
R.E.Halling6918 GN=rpb2 PE=3 SV=1
Length = 241
Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 107/240 (44%), Gaps = 44/240 (18%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 4 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSSTI-TTKVFVNGVWMGV 62
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE
Sbjct: 63 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVEAQSLVLQK 122
Query: 135 -----LHKIKAFKGGNYTFQSL--------LDKX-------------------XXXXXXX 162
L++ +G ++ +Q L LD
Sbjct: 123 KHVRWLNQGHTDEGEDFKWQHLAKSGVIEMLDAEEEETVMICMTPEDLETQGRTNSSAKD 182
Query: 163 XXXXDCSTAWGIKFLVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
D A +K ++ K P ++THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 183 TNDPDFDPAARLKPILG---KSAPHEWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 239
>D5JC19_9HOMO (tr|D5JC19) RNA polymerase II second largest subunit (Fragment)
OS=Lactarius cf. gerardii A.Verbeken05-236 GN=rpb2 PE=3
SV=1
Length = 241
Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 107/240 (44%), Gaps = 44/240 (18%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 4 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSSTI-TTKVFVNGVWMGV 62
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE
Sbjct: 63 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVEAQSLVLQK 122
Query: 135 -----LHKIKAFKGGNYTFQSL--------LDKX-------------------XXXXXXX 162
L++ +G ++ +Q L LD
Sbjct: 123 KHVRWLNQGHTDEGEDFKWQHLAKSGVIEMLDAEEEETVMICMTPEDLETQGRTNSSAKD 182
Query: 163 XXXXDCSTAWGIKFLVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
D A +K ++ K P ++THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 183 TNDPDFDPAARLKPILG---KSAPHEWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 239
>D5JC18_9HOMO (tr|D5JC18) RNA polymerase II second largest subunit (Fragment)
OS=Lactarius cf. gerardii A.Verbeken04-199 GN=rpb2 PE=3
SV=1
Length = 241
Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 107/240 (44%), Gaps = 44/240 (18%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 4 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSSTI-TTKVFVNGVWMGV 62
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE
Sbjct: 63 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVEAQSLVLQK 122
Query: 135 -----LHKIKAFKGGNYTFQSL--------LDKX-------------------XXXXXXX 162
L++ +G ++ +Q L LD
Sbjct: 123 KHVRWLNQGHTDEGEDFKWQHLAKSGVIEMLDAEEEETVMICMTPEDLETQGRTNSSAKD 182
Query: 163 XXXXDCSTAWGIKFLVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
D A +K ++ K P ++THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 183 TNDPDFDPAARLKPILG---KSAPHEWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 239
>D5JC17_9HOMO (tr|D5JC17) RNA polymerase II second largest subunit (Fragment)
OS=Lactarius cf. gerardii A.Verbeken05-309 GN=rpb2 PE=3
SV=1
Length = 241
Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 107/240 (44%), Gaps = 44/240 (18%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 4 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSSTI-TTKVFVNGVWMGV 62
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE
Sbjct: 63 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVEAQSLVLQK 122
Query: 135 -----LHKIKAFKGGNYTFQSL--------LDKX-------------------XXXXXXX 162
L++ +G ++ +Q L LD
Sbjct: 123 KHVRWLNQGHTDEGEDFKWQHLAKSGVIEMLDAEEEETVMICMTPEDLETQGRTNSSAKD 182
Query: 163 XXXXDCSTAWGIKFLVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
D A +K ++ K P ++THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 183 TNDPDFDPAARLKPILG---KSAPHEWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 239
>D5JC16_9HOMO (tr|D5JC16) RNA polymerase II second largest subunit (Fragment)
OS=Lactarius cf. gerardii A.Verbeken04-216 GN=rpb2 PE=3
SV=1
Length = 241
Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 107/240 (44%), Gaps = 44/240 (18%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 4 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSSTI-TTKVFVNGVWMGV 62
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE
Sbjct: 63 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVEAQSLVLQK 122
Query: 135 -----LHKIKAFKGGNYTFQSL--------LDKX-------------------XXXXXXX 162
L++ +G ++ +Q L LD
Sbjct: 123 KHVRWLNQGHTDEGEDFKWQHLAKSGVIEMLDAEEEETVMICMTPEDLETQGRTNSSAKD 182
Query: 163 XXXXDCSTAWGIKFLVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
D A +K ++ K P ++THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 183 TNDPDFDPAARLKPILG---KSAPHEWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 239
>D5JC15_9HOMO (tr|D5JC15) RNA polymerase II second largest subunit (Fragment)
OS=Lactarius cf. gerardii A.Verbeken05-375 GN=rpb2 PE=3
SV=1
Length = 241
Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 107/240 (44%), Gaps = 44/240 (18%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 4 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSSTI-TTKVFVNGVWMGV 62
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE
Sbjct: 63 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVEAQSLVLQK 122
Query: 135 -----LHKIKAFKGGNYTFQSL--------LDKX-------------------XXXXXXX 162
L++ +G ++ +Q L LD
Sbjct: 123 KHVRWLNQGHTDEGEDFKWQHLAKSGVIEMLDAEEEETVMICMTPEDLETQGRTNSSAKD 182
Query: 163 XXXXDCSTAWGIKFLVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
D A +K ++ K P ++THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 183 TNDPDFDPAARLKPILG---KSAPHEWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 239
>D5JC14_9HOMO (tr|D5JC14) RNA polymerase II second largest subunit (Fragment)
OS=Lactarius cf. gerardii A.Verbeken05-355 GN=rpb2 PE=3
SV=1
Length = 241
Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 107/240 (44%), Gaps = 44/240 (18%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 4 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSSTI-TTKVFVNGVWMGV 62
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE
Sbjct: 63 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVEAQSLVLQK 122
Query: 135 -----LHKIKAFKGGNYTFQSL--------LDKX-------------------XXXXXXX 162
L++ +G ++ +Q L LD
Sbjct: 123 KHVRWLNQGHTDEGEDFKWQHLAKSGVIEMLDAEEEETVMICMTPEDLETQGRTNSSAKD 182
Query: 163 XXXXDCSTAWGIKFLVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
D A +K ++ K P ++THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 183 TNDPDFDPAARLKPILG---KSAPHEWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 239
>D5JC13_9HOMO (tr|D5JC13) RNA polymerase II second largest subunit (Fragment)
OS=Lactarius cf. gerardii A.Verbeken05-235 GN=rpb2 PE=3
SV=1
Length = 241
Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 107/240 (44%), Gaps = 44/240 (18%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 4 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSSTI-TTKVFVNGVWMGV 62
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE
Sbjct: 63 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVEAQSLVLQK 122
Query: 135 -----LHKIKAFKGGNYTFQSL--------LDKX-------------------XXXXXXX 162
L++ +G ++ +Q L LD
Sbjct: 123 KHVRWLNQGHTDEGEDFKWQHLAKSGVIEMLDAEEEETVMICMTPEDLETQGRTNSSAKD 182
Query: 163 XXXXDCSTAWGIKFLVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
D A +K ++ K P ++THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 183 TNDPDFDPAARLKPILG---KSAPHEWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 239
>D5JBY3_9HOMO (tr|D5JBY3) RNA polymerase II second largest subunit (Fragment)
OS=Lactarius aff. gerardii KIINA126 GN=rpb2 PE=3 SV=1
Length = 241
Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 107/240 (44%), Gaps = 44/240 (18%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 4 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSSTI-TTKVFVNGVWMGV 62
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE
Sbjct: 63 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVEAQSLVLQK 122
Query: 135 -----LHKIKAFKGGNYTFQSL--------LDKX-------------------XXXXXXX 162
L++ +G ++ +Q L LD
Sbjct: 123 KHVRWLNQGHTDEGEDFKWQHLAKSGVIEMLDAEEEETVMICMTPEDLETQGRTNSSAKD 182
Query: 163 XXXXDCSTAWGIKFLVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
D A +K ++ K P ++THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 183 TNDPDFDPAARLKPILG---KSAPHEWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 239
>D5JC45_9HOMO (tr|D5JC45) RNA polymerase II second largest subunit (Fragment)
OS=Lactarius petersenii GN=rpb2 PE=3 SV=1
Length = 243
Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 108/244 (44%), Gaps = 48/244 (19%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 4 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSSTI-TTKVFVNGVWMGV 62
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE+
Sbjct: 63 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVESQQLVLQK 122
Query: 135 -----LHKIKAFKGGNYTFQSL--------LD-----------------------KXXXX 158
L++ G ++ +Q L LD +
Sbjct: 123 KHVRWLNQGSTDDGEDFKWQHLAKSGVIEMLDAEEEETVMICMTPEDLEAPRHQGRTQSG 182
Query: 159 XXXXXXXXDCSTAWGIKFLVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRV 218
D A +K ++ K P ++THCE+ S +LG+ IIPF +H+ + R
Sbjct: 183 AKNDTNDPDFDPAARLKPILG---KSAPHEWTHCEIHPSMILGICASIIPFPDHNQSPRN 239
Query: 219 LYQA 222
YQ+
Sbjct: 240 TYQS 243
>D5JC44_9HOMO (tr|D5JC44) RNA polymerase II second largest subunit (Fragment)
OS=Lactarius petersenii GN=rpb2 PE=3 SV=1
Length = 245
Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 108/244 (44%), Gaps = 48/244 (19%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 4 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSSTI-TTKVFVNGVWMGV 62
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE+
Sbjct: 63 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVESQQLVLQK 122
Query: 135 -----LHKIKAFKGGNYTFQSL--------LD-----------------------KXXXX 158
L++ G ++ +Q L LD +
Sbjct: 123 KHVRWLNQGSTDDGEDFKWQHLAKSGVIEMLDAEEEETVMICMTPEDLEAPRHQGRTQSG 182
Query: 159 XXXXXXXXDCSTAWGIKFLVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRV 218
D A +K ++ K P ++THCE+ S +LG+ IIPF +H+ + R
Sbjct: 183 AKNDTNDPDFDPAARLKPILG---KSAPHEWTHCEIHPSMILGICASIIPFPDHNQSPRN 239
Query: 219 LYQA 222
YQ+
Sbjct: 240 TYQS 243
>A3QV12_9HYPO (tr|A3QV12) RNA polymerase II second largest subunit (Fragment)
OS=Nectria major GN=RPB2 PE=3 SV=1
Length = 380
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 106/250 (42%), Gaps = 50/250 (20%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNL++ VS EPLI+ + + GM+ + + + K+F+NG WVGV
Sbjct: 129 GQACGLVKNLSLMCYVSVGSPSEPLIEFMINRGMEVVEEYEPLRYPHATKIFVNGTWVGV 188
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVV--ENLHKIK 139
+D V + +V + RD + +E ++F+DAGR++RP+ V E+ H+
Sbjct: 189 HQDPKHLVGQVLDTRRKSYLQYEVSLVRDIRDREFKVFSDAGRVMRPVFTVQQEDDHETG 248
Query: 140 AFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAW-------GIKFL--------------- 177
KG + L++K W I++L
Sbjct: 249 IAKGQLVLTKDLVNKLAKEQSEPSDDPASKIGWEGLIRAGAIEYLDAEEEETAMICMTPE 308
Query: 178 --------VAGV---------------DKKQPLK--YTHCELDMSFLLGLSCGIIPFANH 212
AG+ K P YTHCE+ S +LG+ IIPF +H
Sbjct: 309 DLDFYRLQKAGIAVEEDIGDNPNGRLKTKTNPTTHMYTHCEIHPSMILGICASIIPFPDH 368
Query: 213 DHARRVLYQA 222
+ + R YQ+
Sbjct: 369 NQSPRNTYQS 378
>D5JC11_9HOMO (tr|D5JC11) RNA polymerase II second largest subunit (Fragment)
OS=Lactarius aff. gerardii H.T.Le431 GN=rpb2 PE=3 SV=1
Length = 241
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 106/237 (44%), Gaps = 38/237 (16%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 4 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSSTI-TTKVFVNGVWMGV 62
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE
Sbjct: 63 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVEAQSLVLQK 122
Query: 135 -----LHKIKAFKGGNYTFQSL--------LDKXXXXXXXXXXXXD-----CSTAWGIK- 175
L++ G ++ +Q L LD + T G K
Sbjct: 123 KHVRWLNQGHTDDGEDFKWQHLAKSGVIEMLDAEEEETVMICMTPEDLETQGRTNSGAKD 182
Query: 176 ----------FLVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
L + K P ++THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 183 TNDPDFDPAARLKPTLGKSAPHEWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 239
>D5JC09_9HOMO (tr|D5JC09) RNA polymerase II second largest subunit (Fragment)
OS=Lactarius aff. gerardii H.T.Le394 GN=rpb2 PE=3 SV=1
Length = 241
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 106/237 (44%), Gaps = 38/237 (16%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 4 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSSTI-TTKVFVNGVWMGV 62
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE
Sbjct: 63 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVEAQSLVLQK 122
Query: 135 -----LHKIKAFKGGNYTFQSL--------LDKXXXXXXXXXXXXD-----CSTAWGIK- 175
L++ G ++ +Q L LD + T G K
Sbjct: 123 KHVRWLNQGHTDDGEDFKWQHLAKSGVIEMLDAEEEETVMICMTPEDLETQGRTNSGAKD 182
Query: 176 ----------FLVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
L + K P ++THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 183 TNDPDFDPAARLKPTLGKSAPHEWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 239
>A3QRS8_9HOMO (tr|A3QRS8) RNA polymerase II second largest subunit (Fragment)
OS=Russula aff. delica UE24.08.2004-20 GN=RPB2 PE=4 SV=1
Length = 242
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 107/241 (44%), Gaps = 42/241 (17%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 3 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSST-LTTKVFVNGVWMGV 61
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVENLHKIKAF 141
D + +V I RD +++E+R++ D GR+ RPL +VE+ +
Sbjct: 62 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVEDQQLVLQK 121
Query: 142 K------------GGNYTFQ--------SLLDKXXXXXXXX-XXXXDCSTAW--GIKFLV 178
K G ++ +Q LLD D TA G LV
Sbjct: 122 KHVRWLTQGTTDDGEDFKWQHLAKSGVIELLDAEEEETVMICMTPEDVETARLHGRGMLV 181
Query: 179 A-----------------GVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQ 221
+ ++ P +THCE+ S +LG+ IIPF +H+ + R YQ
Sbjct: 182 SNDKTPAAEFDPAVRIKPSLENSAPHVWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 241
Query: 222 A 222
+
Sbjct: 242 S 242
>A3QUX1_9HYPO (tr|A3QUX1) RNA polymerase II second largest subunit (Fragment)
OS=Neonectria ditissima GN=RPB2 PE=3 SV=1
Length = 381
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 106/250 (42%), Gaps = 50/250 (20%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNL++ VS EPLI+ + + GM+ + + + K+F+NG WVGV
Sbjct: 129 GQACGLVKNLSLMCYVSVGSPSEPLIEFMINRGMEVVEEYEPLRYPHATKIFVNGTWVGV 188
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVV--ENLHKIK 139
+D V + +V + RD + +E ++F+DAGR++RP+ V E+ H+
Sbjct: 189 HQDPKHLVGQVLDTRRKSYLQYEVSLVRDIRDREFKVFSDAGRVMRPVFTVQQEDDHETG 248
Query: 140 AFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAW-------GIKFL--------------- 177
KG + L++K W I++L
Sbjct: 249 IAKGQLVLTKDLVNKLAKEQSEPSDDPASKIGWEGLIRAGAIEYLDAEEEETAMICMTPE 308
Query: 178 --------VAGV---------------DKKQPLK--YTHCELDMSFLLGLSCGIIPFANH 212
AG+ K P YTHCE+ S +LG+ IIPF +H
Sbjct: 309 DLDFYRLQKAGIAVEEDIGDNPNGRLKTKTNPTTHMYTHCEIHPSMILGICASIIPFPDH 368
Query: 213 DHARRVLYQA 222
+ + R YQ+
Sbjct: 369 NQSPRNTYQS 378
>A3QRQ1_9HOMO (tr|A3QRQ1) RNA polymerase II second largest subunit (Fragment)
OS=Lactarius romagnesii GN=RPB2 PE=3 SV=1
Length = 244
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 107/241 (44%), Gaps = 42/241 (17%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 4 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSST-LTTKVFVNGVWMGV 62
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE+
Sbjct: 63 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVEDQQLVLQK 122
Query: 135 -----LHKIKAFKGGNYTFQSL--------LDKXXXXXXXX-XXXXDCSTAW-------- 172
L++ G ++ +Q L LD D TA
Sbjct: 123 KHVRWLNQGTTDDGEDFKWQHLAKSGVIEMLDAEEEETVMICMTPEDLETARLQGRGMPS 182
Query: 173 ------GIKF-----LVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQ 221
G F L + K P +THCE+ S +LG+ IIPF +H+ + R YQ
Sbjct: 183 TTDNTNGADFDPAARLKPTLGKSAPHIWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 242
Query: 222 A 222
+
Sbjct: 243 S 243
>O48913_GINBI (tr|O48913) DNA-directed RNA polymerase (Fragment) OS=Ginkgo biloba
GN=RPB2 PE=2 SV=1
Length = 555
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 102/222 (45%), Gaps = 14/222 (6%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ ++ P+++ L + + + + + K+F+NG WVG+
Sbjct: 12 GQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPSATKIFVNGCWVGI 71
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVE-------- 133
D +L V +V + RD + +E+R++ D GR RPL +VE
Sbjct: 72 HRDPDLLVKTLRQLRRQVDVNTEVGVVRDIRLRELRLYTDYGRCSRPLFIVEKQRLLIKK 131
Query: 134 -NLHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVDKKQPL---KY 189
++ ++ +G + L+ K + I LV + + Y
Sbjct: 132 ADIRALQQREGPEEGWHDLVAKGFIEYVDTEEEETTMISMTISDLVTARNNPEEAYSHTY 191
Query: 190 THCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
THCE+ S +LG+ IIPF +HD + R YQ+ +QA+G
Sbjct: 192 THCEIHPSLILGVCASIIPFPDHDQSPRNTYQS-AMGKQAMG 232
>A9Q161_9AGAR (tr|A9Q161) RNA polymerase II second largest subunit (Fragment)
OS=Nolanea strictior GN=RPB2 PE=3 SV=1
Length = 358
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 108/234 (46%), Gaps = 36/234 (15%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S P+I+ L + G++ L ++ H++ KVF+NG W+GV
Sbjct: 126 GQACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSQTP-CTKVFVNGVWMGV 184
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN----LHK 137
D V +V + RD ++KE+R++ DAGR+ RPL +VEN L K
Sbjct: 185 HRDPANLVKTIKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVENQQLLLQK 244
Query: 138 --IKAFKGG------NYTFQSLLD---------KXXXXXXXXXXXXDCSTAW----GIKF 176
IK G Y ++ L+ + D T+ GI
Sbjct: 245 KHIKWITEGVNDEEEEYKWEHLVKGGVVELLDAEEEETVMISMTPEDLETSRLQQSGIDT 304
Query: 177 LV--AGVDKKQPLK-------YTHCELDMSFLLGLSCGIIPFANHDHARRVLYQ 221
V VD LK +THCE+ S +LG+ IIPF +H+ + R YQ
Sbjct: 305 TVNDGEVDPAARLKAGTHSHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 358
>Q2I5T0_9FUNG (tr|Q2I5T0) DNA-directed RNA polymerase (Fragment) OS=Mortierella
verticillata GN=RPB2 PE=3 SV=1
Length = 721
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 109/244 (44%), Gaps = 36/244 (14%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S P+I+ L GM+ L + T + + KVF+NG W GV
Sbjct: 128 GQACGLVKNLALMSAISVGSPSAPIIEFLEGWGMENLEELTANNILDATKVFVNGVWAGV 187
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D V +V I +D ++KE+R++ DAGR LRPL +VE+
Sbjct: 188 HRDPGSLVNTLKRLRRNMDINSEVSIVKDIREKELRMYTDAGRCLRPLFIVEDQALLLRK 247
Query: 135 -----LHKIKAFKGGN----YTFQSLLD---------KXXXXXXXXXXXXDCSTAWGIKF 176
L + ++ G + + LL + D + + +
Sbjct: 248 EHIDELTRAPYYEDGKAMEPWGWNDLLSNGIVEFVDAEEEETIMICMTPDDLAESRQVDH 307
Query: 177 LVAGVDKKQPLK---------YTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQ 227
+ D Q +K +THCE+ S +LG+ IIPF +H+ + R YQ+ +
Sbjct: 308 VQQPKDAAQRVKGTSSTSLHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS-AMGK 366
Query: 228 QAIG 231
QA+G
Sbjct: 367 QAMG 370
>A9Q152_9AGAR (tr|A9Q152) RNA polymerase II second largest subunit (Fragment)
OS=Tephrocybe rancida GN=RPB2 PE=3 SV=1
Length = 357
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 109/236 (46%), Gaps = 41/236 (17%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S P+I+ L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 126 GQACGLVKNLALMSCISVGSYSAPVIEFLEEWGLESLEENAHSS-TPCTKVFVNGVWMGV 184
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN----LHK 137
D V +V + RD ++KE+R++ DAGR+ RPL +VEN L K
Sbjct: 185 HRDPANLVKTIKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVENQQLTLEK 244
Query: 138 --IKAFKGG------NYTFQSLLD---------KXXXXXXXXXXXXDCSTAWGIKFLVAG 180
I+ + G Y ++SL+ + D T+ + +G
Sbjct: 245 KHIRWLQNGMDDDQKAYKWESLVKGGVVELLDAEEEETVMISMTPEDLETS---RLQQSG 301
Query: 181 V--------DKKQPLK-------YTHCELDMSFLLGLSCGIIPFANHDHARRVLYQ 221
V D LK +THCE+ S +LG+ IIPF +H+ + R YQ
Sbjct: 302 VNPAANDDFDPAARLKAGINSHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 357
>D5JC71_9HOMO (tr|D5JC71) RNA polymerase II second largest subunit (Fragment)
OS=Lactarius cf. sepiaceus P.Leonard7308 GN=rpb2 PE=3
SV=1
Length = 242
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 106/238 (44%), Gaps = 39/238 (16%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 4 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSSTI-TTKVFVNGVWMGV 62
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE
Sbjct: 63 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVEAQQLVLQK 122
Query: 135 -----LHKIKAFKGGNYTFQSL--------LDKXXXXXXXXXXXXD-----CSTAWGIK- 175
L++ G ++ +Q L LD + T G K
Sbjct: 123 KHVRWLNQGSTDDGEDFKWQHLAKSGVIEMLDAEEEETVMICMTPEDLETQGRTHSGAKN 182
Query: 176 -----------FLVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
L + K P ++THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 183 NKNDPDFDPAARLKPTLGKSAPHEWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 240
>D5JC58_9HOMO (tr|D5JC58) RNA polymerase II second largest subunit (Fragment)
OS=Lactarius cf. sepiaceus S.J.McMullan-Fisher1913
GN=rpb2 PE=3 SV=1
Length = 242
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 106/238 (44%), Gaps = 39/238 (16%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 4 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSSTI-TTKVFVNGVWMGV 62
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE
Sbjct: 63 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVEAQQLVLQK 122
Query: 135 -----LHKIKAFKGGNYTFQSL--------LDKXXXXXXXXXXXXD-----CSTAWGIK- 175
L++ G ++ +Q L LD + T G K
Sbjct: 123 KHVRWLNQGSTDDGEDFKWQHLAKSGVIEMLDAEEEETVMICMTPEDLETQGRTHSGAKN 182
Query: 176 -----------FLVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
L + K P ++THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 183 NKNDPDFDPAARLKPTLGKSAPHEWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 240
>D5JC57_9HOMO (tr|D5JC57) RNA polymerase II second largest subunit (Fragment)
OS=Lactarius cf. sepiaceus J.E.Tonkin1000 GN=rpb2 PE=3
SV=1
Length = 242
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 106/238 (44%), Gaps = 39/238 (16%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 4 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSSTI-TTKVFVNGVWMGV 62
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE
Sbjct: 63 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVEAQQLVLQK 122
Query: 135 -----LHKIKAFKGGNYTFQSL--------LDKXXXXXXXXXXXXD-----CSTAWGIK- 175
L++ G ++ +Q L LD + T G K
Sbjct: 123 KHVRWLNQGSTDDGEDFKWQHLAKSGVIEMLDAEEEETVMICMTPEDLETQGRTHSGAKN 182
Query: 176 -----------FLVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
L + K P ++THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 183 NKNDPDFDPAARLKPTLGKSAPHEWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 240
>D5JC55_9HOMO (tr|D5JC55) RNA polymerase II second largest subunit (Fragment)
OS=Lactarius cf. sepiaceus S.H.Lewis908 GN=rpb2 PE=3
SV=1
Length = 242
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 106/238 (44%), Gaps = 39/238 (16%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 4 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSSTI-TTKVFVNGVWMGV 62
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE
Sbjct: 63 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVEAQQLVLQK 122
Query: 135 -----LHKIKAFKGGNYTFQSL--------LDKXXXXXXXXXXXXD-----CSTAWGIK- 175
L++ G ++ +Q L LD + T G K
Sbjct: 123 KHVRWLNQGSTDDGEDFKWQHLAKSGVIEMLDAEEEETVMICMTPEDLETQGRTHSGAKN 182
Query: 176 -----------FLVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
L + K P ++THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 183 NKNDPDFDPAARLKPTLGKSAPHEWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 240
>D5JC54_9HOMO (tr|D5JC54) RNA polymerase II second largest subunit (Fragment)
OS=Lactarius cf. sepiaceus H.Weatherhead39 GN=rpb2 PE=3
SV=1
Length = 242
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 106/238 (44%), Gaps = 39/238 (16%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 4 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSSTI-TTKVFVNGVWMGV 62
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE
Sbjct: 63 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVEAQQLVLQK 122
Query: 135 -----LHKIKAFKGGNYTFQSL--------LDKXXXXXXXXXXXXD-----CSTAWGIK- 175
L++ G ++ +Q L LD + T G K
Sbjct: 123 KHVRWLNQGSTDDGEDFKWQHLAKSGVIEMLDAEEEETVMICMTPEDLETQGRTHSGAKN 182
Query: 176 -----------FLVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
L + K P ++THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 183 NKNDPDFDPAARLKPTLGKSAPHEWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 240
>D5JC37_9HOMO (tr|D5JC37) RNA polymerase II second largest subunit (Fragment)
OS=Lactarius aff. gerardii R.Watling24783 GN=rpb2 PE=3
SV=1
Length = 242
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 104/238 (43%), Gaps = 39/238 (16%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 4 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSSTI-TTKVFVNGVWMGV 62
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE
Sbjct: 63 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVEAQQLVLQK 122
Query: 135 -----LHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXD---CSTAWGIKF---------- 176
L++ G ++ +Q L C T ++
Sbjct: 123 KHVRWLNQGSTDDGEDFKWQHLAKSGVIEMLDAEEEETVMICMTPEDLETQGRTHSSAKN 182
Query: 177 ------------LVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
L + K P ++THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 183 EKNDPDFDPAARLKPTLGKSAPHEWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 240
>D5JBZ5_9HOMO (tr|D5JBZ5) RNA polymerase II second largest subunit (Fragment)
OS=Lactarius aff. gerardii D.Stubbe07-502 GN=rpb2 PE=3
SV=1
Length = 241
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 104/237 (43%), Gaps = 38/237 (16%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 4 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSSTI-TTKVFVNGVWMGV 62
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE
Sbjct: 63 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVEAQSLVLQK 122
Query: 135 -----LHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXD---CSTAWGIKF---------- 176
L++ G ++ +Q L C T ++
Sbjct: 123 KHVRWLNQGHTDDGEDFKWQHLAKSGVIEMLDAEEEETVMICMTPEDLETQGRTNSSAKD 182
Query: 177 -----------LVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
L + K P ++THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 183 TNDPDFDPAARLKPTLGKSAPHEWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 239
>D5JBY1_9HOMO (tr|D5JBY1) RNA polymerase II second largest subunit (Fragment)
OS=Lactarius aff. gerardii X.H.Wang1768 GN=rpb2 PE=3
SV=1
Length = 241
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 104/237 (43%), Gaps = 38/237 (16%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 4 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSSTI-TTKVFVNGVWMGV 62
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE
Sbjct: 63 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVEAQSLVLQK 122
Query: 135 -----LHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXD---CSTAWGIKF---------- 176
L++ G ++ +Q L C T ++
Sbjct: 123 KHVRWLNQGHTDDGEDFKWQHLAKSGVIEMLDAEEEETVMICMTPEDLETQGRTNSSAKD 182
Query: 177 -----------LVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
L + K P ++THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 183 TNDPDFDPAARLKPTLGKSAPHEWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 239
>D5JBX5_9HOMO (tr|D5JBX5) RNA polymerase II second largest subunit (Fragment)
OS=Lactarius bicolor GN=rpb2 PE=3 SV=1
Length = 241
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 104/237 (43%), Gaps = 38/237 (16%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 4 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSSTI-TTKVFVNGVWMGV 62
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE
Sbjct: 63 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVEAQSLVLQK 122
Query: 135 -----LHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXD---CSTAWGIKF---------- 176
L++ G ++ +Q L C T ++
Sbjct: 123 KHVRWLNQGHTDDGEDFKWQHLAKSGVIEMLDAEEEETVMICMTPEDLETQGRTNSSAKD 182
Query: 177 -----------LVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
L + K P ++THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 183 TNDPDFDPAARLKPTLGKSAPHEWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 239
>D5JBZ0_9HOMO (tr|D5JBZ0) RNA polymerase II second largest subunit (Fragment)
OS=Lactarius aff. gerardii S.N.YahyaFRIM1357 GN=rpb2
PE=3 SV=1
Length = 241
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 104/237 (43%), Gaps = 38/237 (16%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 4 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSSTI-TTKVFVNGVWMGV 62
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE
Sbjct: 63 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVEAQSLVLQK 122
Query: 135 -----LHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXD---CSTAWGIKF---------- 176
L++ G ++ +Q L C T ++
Sbjct: 123 KHVRWLNQGHTDDGEDFKWQHLAKSGVIEMLDAEEEETVMICMTPEDLETQGRANSGAKD 182
Query: 177 -----------LVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
L + K P ++THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 183 TNDPDFDPAARLKPTLGKSAPHEWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 239
>D5JBY9_9HOMO (tr|D5JBY9) RNA polymerase II second largest subunit (Fragment)
OS=Lactarius aff. gerardii R.Watling26708 GN=rpb2 PE=3
SV=1
Length = 241
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 104/237 (43%), Gaps = 38/237 (16%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 4 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSSTI-TTKVFVNGVWMGV 62
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE
Sbjct: 63 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVEAQSLVLQK 122
Query: 135 -----LHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXD---CSTAWGIKF---------- 176
L++ G ++ +Q L C T ++
Sbjct: 123 KHVRWLNQGHTDDGEDFKWQHLAKSGVIEMLDAEEEETVMICMTPEDLETQGRANSGAKD 182
Query: 177 -----------LVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
L + K P ++THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 183 TNDPDFDPAARLKPTLGKSAPHEWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 239
>Q873U3_9AGAR (tr|Q873U3) DNA-directed RNA polymerase (Fragment) OS=Lycoperdon
pyriforme PE=3 SV=2
Length = 849
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 108/247 (43%), Gaps = 43/247 (17%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S P+I+ L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 297 GQACGLVKNLALMSCISVGSYSAPVIEFLEEWGLESLEENAHSATPCT-KVFVNGVWMGV 355
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVENLHKIKAF 141
D + +V + RD ++KE+RI+ DAGR+ RPL +VEN +
Sbjct: 356 HRDPANLMKTIKKLRRKDDISPEVSVVRDIREKELRIYTDAGRVCRPLFIVENQQLLLQK 415
Query: 142 K------------GGNYTFQSLLD---------KXXXXXXXXXXXXDCSTAWGIKFLVAG 180
K G Y ++ ++ + D + + AG
Sbjct: 416 KHIRWLNSGFDEEGSEYKWEQMIKGGVIELLDAEEEETVMISMTPEDLENS---RLQAAG 472
Query: 181 VDK----------------KQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQK 224
VD +THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 473 VDPHANDGDFDPAARLKAGTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS-A 531
Query: 225 HSQQAIG 231
+QA+G
Sbjct: 532 MGKQAMG 538
>A3QRQ0_9HOMO (tr|A3QRQ0) RNA polymerase II second largest subunit (Fragment)
OS=Lactarius acris GN=RPB2 PE=3 SV=1
Length = 247
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 106/241 (43%), Gaps = 42/241 (17%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 6 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSST-LTTKVFVNGVWMGV 64
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE+
Sbjct: 65 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVEDQQLVLQK 124
Query: 135 -----LHKIKAFKGGNYTFQSL--------LDKXXXXXXXX-XXXXDCSTAW-------- 172
L++ G + +Q L LD D TA
Sbjct: 125 KHVRWLNQGTTDDGEEFKWQHLAKSGVIEMLDAEEEETVMICMTPEDLETARLQGRGMPS 184
Query: 173 ------GIKF-----LVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQ 221
G F L + K P +THCE+ S +LG+ IIPF +H+ + R YQ
Sbjct: 185 TTDNTNGADFDPAARLKPTLGKSAPHIWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 244
Query: 222 A 222
+
Sbjct: 245 S 245
>D5JC52_9HOMO (tr|D5JC52) RNA polymerase II second largest subunit (Fragment)
OS=Lactarius cf. sepiaceus P.Leonard40509 GN=rpb2 PE=3
SV=1
Length = 241
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 106/238 (44%), Gaps = 39/238 (16%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 4 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSSTI-TTKVFVNGVWMGV 62
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE
Sbjct: 63 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVEAQQLVLQK 122
Query: 135 -----LHKIKAFKGGNYTFQSL--------LDKXXXXXXXXXXXXD-----CSTAWGIK- 175
L++ G ++ +Q L LD + T G K
Sbjct: 123 KHVRWLNQGSTDDGEDFKWQHLAKSGVIEMLDAEEEETVMICMTPEDLETQGRTHSGAKN 182
Query: 176 -----------FLVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
L + K P ++THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 183 NKNDPDFDPAARLKPTLGKSAPHEWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 240
>D5JC01_9HOMO (tr|D5JC01) RNA polymerase II second largest subunit (Fragment)
OS=Lactarius aff. gerardii D.Stubbe/R.Walleyn07-426
GN=rpb2 PE=3 SV=1
Length = 239
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 106/240 (44%), Gaps = 44/240 (18%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 4 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSSTI-TTKVFVNGVWMGV 62
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE
Sbjct: 63 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVEAQSLVLQK 122
Query: 135 -----LHKIKAFKGGNYTFQSL--------LDK-------------------XXXXXXXX 162
L++ G ++ +Q L LD
Sbjct: 123 KHVRWLNQGHTDDGEDFKWQHLAKSGVIEMLDAEEEETVMICMTPEDLETQGRTNSSAKD 182
Query: 163 XXXXDCSTAWGIKFLVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
D A +K ++ K P ++THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 183 TNDPDFDPAARLKPILG---KSAPHEWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 239
>D5JC23_9HOMO (tr|D5JC23) RNA polymerase II second largest subunit (Fragment)
OS=Lactarius cf. gerardii P.R.Leacock5770 GN=rpb2 PE=3
SV=1
Length = 241
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 106/240 (44%), Gaps = 44/240 (18%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 4 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSSTI-TTKVFVNGVWMGV 62
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE
Sbjct: 63 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVEAQSLVLQK 122
Query: 135 -----LHKIKAFKGGNYTFQSL--------LDKX-------------------XXXXXXX 162
L++ G ++ +Q L LD
Sbjct: 123 KHVRWLNQGHTDDGEDFKWQHLAKSGVIEMLDAEEEETVMICMTPEDLETQGRTNSSAKD 182
Query: 163 XXXXDCSTAWGIKFLVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
D A +K ++ K P ++THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 183 TNDPDFDPAARLKPILG---KSAPHEWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 239
>D5JC20_9HOMO (tr|D5JC20) RNA polymerase II second largest subunit (Fragment)
OS=Lactarius cf. gerardii A.Verbeken05-283 GN=rpb2 PE=3
SV=1
Length = 241
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 106/240 (44%), Gaps = 44/240 (18%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 4 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSSTI-TTKVFVNGVWMGV 62
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE
Sbjct: 63 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVEAQSLVLQK 122
Query: 135 -----LHKIKAFKGGNYTFQSL--------LDKX-------------------XXXXXXX 162
L++ G ++ +Q L LD
Sbjct: 123 KHVRWLNQGHTDDGEDFKWQHLAKSGVIEMLDAEEEETVMICMTPEDLETQGRTNSSAKD 182
Query: 163 XXXXDCSTAWGIKFLVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
D A +K ++ K P ++THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 183 TNDPDFDPAARLKPILG---KSAPHEWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 239
>D5JC10_9HOMO (tr|D5JC10) RNA polymerase II second largest subunit (Fragment)
OS=Lactarius aff. gerardii H.T.Le411 GN=rpb2 PE=3 SV=1
Length = 241
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 106/240 (44%), Gaps = 44/240 (18%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 4 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSSTI-TTKVFVNGVWMGV 62
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE
Sbjct: 63 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVEAQSLVLQK 122
Query: 135 -----LHKIKAFKGGNYTFQSL--------LDKX-------------------XXXXXXX 162
L++ G ++ +Q L LD
Sbjct: 123 KHVRWLNQGHTDDGEDFKWQHLAKSGVIEMLDAEEEETVMICMTPEDLETQGRTNSSAKD 182
Query: 163 XXXXDCSTAWGIKFLVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
D A +K ++ K P ++THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 183 TNDPDFDPAARLKPILG---KSAPHEWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 239
>D5JC04_9HOMO (tr|D5JC04) RNA polymerase II second largest subunit (Fragment)
OS=Lactarius aff. gerardii A.Verbeken/R.Walleyn04-090
GN=rpb2 PE=3 SV=1
Length = 241
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 106/240 (44%), Gaps = 44/240 (18%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 4 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSSTI-TTKVFVNGVWMGV 62
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE
Sbjct: 63 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVEAQSLVLQK 122
Query: 135 -----LHKIKAFKGGNYTFQSL--------LDKX-------------------XXXXXXX 162
L++ G ++ +Q L LD
Sbjct: 123 KHVRWLNQGHTDDGEDFKWQHLAKSGVIEMLDAEEEETVMICMTPEDLETQGRTNSSAKD 182
Query: 163 XXXXDCSTAWGIKFLVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
D A +K ++ K P ++THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 183 TNDPDFDPAARLKPILG---KSAPHEWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 239
>D5JBZ9_9HOMO (tr|D5JBZ9) RNA polymerase II second largest subunit (Fragment)
OS=Lactarius aff. gerardii H.T.Le295 GN=rpb2 PE=3 SV=1
Length = 241
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 106/240 (44%), Gaps = 44/240 (18%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 4 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSSTI-TTKVFVNGVWMGV 62
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE
Sbjct: 63 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVEAQSLVLQK 122
Query: 135 -----LHKIKAFKGGNYTFQSL--------LDKX-------------------XXXXXXX 162
L++ G ++ +Q L LD
Sbjct: 123 KHVRWLNQGHTDDGEDFKWQHLAKSGVIEMLDAEEEETVMICMTPEDLETQGRTNSSAKD 182
Query: 163 XXXXDCSTAWGIKFLVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
D A +K ++ K P ++THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 183 TNDPDFDPAARLKPILG---KSAPHEWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 239
>Q5EG79_9HOMO (tr|Q5EG79) DNA-directed RNA polymerase (Fragment)
OS=Fibulorhizoctonia sp. LA082103L GN=rpb2 PE=3 SV=1
Length = 576
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 112/247 (45%), Gaps = 43/247 (17%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S L P+I+ L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 6 GQACGLVKNLALMSCISVGSLSAPVIEFLEEWGLESLEENAHSST-PCTKVFVNGVWMGV 64
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D V +V + RD ++KE+R++ DAGR+ RPL +VEN
Sbjct: 65 HRDPANLVXTIKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVENQQLALQK 124
Query: 135 --LHKI-KAFKGGNYTFQ----------SLLD-KXXXXXXXXXXXXDCSTAWGIKFLVAG 180
+H I + + F+ LLD + D + + ++G
Sbjct: 125 KHVHWINRGYDDAEEEFKWEQLVKSGIVELLDAEEEETVMISMTPEDLENS---RLQLSG 181
Query: 181 VDK----------------KQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQK 224
VD +THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 182 VDPTVNDGDFDPAARLKAGTNAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS-A 240
Query: 225 HSQQAIG 231
+QA+G
Sbjct: 241 MGKQAMG 247
>Q2ERY9_9HOMO (tr|Q2ERY9) DNA-directed RNA polymerase (Fragment) OS=Coniophora
arida GN=RPB2 PE=3 SV=1
Length = 711
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/249 (29%), Positives = 114/249 (45%), Gaps = 45/249 (18%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S P+I+ L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 129 GQACGLVKNLALMSCISVGSFSAPVIEFLEEWGLESLEENAHSST-VCTKVFVNGVWMGV 187
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN---LHKI 138
D V +V + RD +++E+R++ DAGR+ RPL +VEN L +
Sbjct: 188 HRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLLLQK 247
Query: 139 KAFKGGNYTFQ-------------------SLLD-KXXXXXXXXXXXXDCSTAWGIKFLV 178
K K N ++ LLD + D + +
Sbjct: 248 KHIKWLNQGYRDDDPTEEFKWDQLVKGGVIELLDAEEEETVMISMTPEDLENS---RLQS 304
Query: 179 AGVDKKQP---------LK-------YTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
AG+D +Q LK +THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 305 AGIDTRQSDEDYDPAARLKSGINAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 364
Query: 223 QKHSQQAIG 231
+QA+G
Sbjct: 365 -AMGKQAMG 372
>D5JC30_9HOMO (tr|D5JC30) RNA polymerase II second largest subunit (Fragment)
OS=Lactarius subgerardii GN=rpb2 PE=3 SV=1
Length = 243
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 106/240 (44%), Gaps = 41/240 (17%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 4 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSSTI-TTKVFVNGVWMGV 62
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE
Sbjct: 63 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVEAQQLVLQK 122
Query: 135 -----LHKIKAFKGGNYTFQSL--------LDKXXXXXXXXXXXXD--------CSTAWG 173
L++ G ++ +Q L LD + T G
Sbjct: 123 KHVRWLNQGSTDDGEDFKWQHLAKSGVIEMLDAEEEETVMICMTPEDLETPRLQGHTQSG 182
Query: 174 IK-----------FLVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
K L + K P ++THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 183 AKNDTDPDFDPAARLKPTLGKSAPHEWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 242
>D5JBZ2_9HOMO (tr|D5JBZ2) RNA polymerase II second largest subunit (Fragment)
OS=Lactarius aff. gerardii R.E.Halling8262 GN=rpb2 PE=3
SV=1
Length = 244
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 106/240 (44%), Gaps = 41/240 (17%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 4 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSSTI-TTKVFVNGVWMGV 62
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE
Sbjct: 63 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVEAQQLVLQK 122
Query: 135 -----LHKIKAFKGGNYTFQSL--------LDKXXXXXXXXXXXXD--------CSTAWG 173
L++ G ++ +Q L LD + T G
Sbjct: 123 KHVRWLNQGSTDDGEDFKWQHLAKSGVIEMLDAEEEETVMICMTPEDLETPRLQGRTQSG 182
Query: 174 IK-----------FLVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
K L + K P ++THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 183 AKNDIDPDFDPAARLKPTLGKSAPHEWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 242
>A9Q154_9AGAR (tr|A9Q154) RNA polymerase II second largest subunit (Fragment)
OS=Termitomyces sp. IE-BSG-BSIsp.1 GN=RPB2 PE=3 SV=1
Length = 355
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 105/232 (45%), Gaps = 41/232 (17%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S P+I+ L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 126 GQACGLVKNLALMSCISVGSYSAPVIEFLEEWGLESLEENAHSS-TPCTKVFVNGVWMGV 184
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D V +V + RD ++KE+R++ DAGR+ RPL +VEN
Sbjct: 185 HRDPANLVKTIKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVENQQLALEK 244
Query: 135 -----LHKIKAFKGGNYTFQSLLD---------KXXXXXXXXXXXXDCSTAWGIKFLVAG 180
L K G +Y ++SL+ + D T+ + +G
Sbjct: 245 KHVRWLSNGKDDNGADYKWESLVKGGVVELLDAEEEETVMISMTPEDLETS---RLQQSG 301
Query: 181 V--------DKKQPLK-------YTHCELDMSFLLGLSCGIIPFANHDHARR 217
V D LK +THCE+ S +LG+ IIPF +H+ + R
Sbjct: 302 VNPTANEDFDPAARLKAGINSHTWTHCEIHPSMILGICASIIPFPDHNQSPR 353
>D2U5A7_9CEST (tr|D2U5A7) RNA polymerase II (Fragment) OS=Taenia crassiceps
GN=rpb2 PE=3 SV=1
Length = 451
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 106/220 (48%), Gaps = 14/220 (6%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G GLVKNLA+ +S P+++ L + M+ L + + + + K+F+NG WVG+
Sbjct: 125 GSAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIGKTCKIFVNGCWVGI 184
Query: 82 CEDSN-LFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVE------- 133
+ L V +V + RD + +E+RI+ DAGRI RPL++VE
Sbjct: 185 HNSPDHLMVTLRKLRRQVDVIVSEVSMVRDYRNQEIRIYTDAGRICRPLVIVEKGKLMLK 244
Query: 134 --NLHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVDKKQPLKYTH 191
++ ++K + +Q L+ A G + A V+ + +TH
Sbjct: 245 RSHIEQLKNRAYNRFCWQELVLYGVVEYIDILEEETAMIAMGPAEMQAAVNYCK--THTH 302
Query: 192 CELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
CE+ S +LG+ IIPF +H+ + R YQ+ +QA+G
Sbjct: 303 CEIHPSMILGICASIIPFCDHNQSPRNTYQS-AMGKQAMG 341
>A3QRN8_9HOMO (tr|A3QRN8) RNA polymerase II second largest subunit (Fragment)
OS=Lactarius longisporus GN=RPB2 PE=3 SV=1
Length = 244
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 104/239 (43%), Gaps = 40/239 (16%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 6 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSST-LTTKVFVNGVWMGV 64
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE+
Sbjct: 65 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVESQQLVLQK 124
Query: 135 -----LHKIKAFKGGNYTFQSL--------LDKXXXXXXXX-XXXXDCSTAW-------- 172
L++ G + +Q L LD D TA
Sbjct: 125 KHVRWLNQGATDDGEEFKWQHLAKSGVIEMLDAEEEETVMICMTPEDLETARLQGPGAQK 184
Query: 173 ---------GIKFLVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
L + K P +THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 185 NDSNDADFDPAARLKPSLGKSAPHIWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 243
>D5JBY6_9HOMO (tr|D5JBY6) RNA polymerase II second largest subunit (Fragment)
OS=Lactarius aff. gerardii E.NagasawaTMI15558 GN=rpb2
PE=3 SV=1
Length = 238
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 103/236 (43%), Gaps = 38/236 (16%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 4 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSSTI-TTKVFVNGVWMGV 62
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE
Sbjct: 63 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVEAQSLVLQK 122
Query: 135 -----LHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXD---CSTAWGIKF---------- 176
L++ G ++ +Q L C T ++
Sbjct: 123 KHVRWLNQGHTDDGEDFKWQHLAKSGVIEMLDAEEEETVMICMTPEDLETQGRTNSSAKD 182
Query: 177 -----------LVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQ 221
L + K P ++THCE+ S +LG+ IIPF +H+ + R YQ
Sbjct: 183 TNDPDFDPAARLKPTLGKSAPHEWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 238
>D5JC65_9HOMO (tr|D5JC65) RNA polymerase II second largest subunit (Fragment)
OS=Lactarius cf. wirrabara G.Gates30-01-2007 GN=rpb2
PE=3 SV=1
Length = 239
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 104/237 (43%), Gaps = 38/237 (16%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 4 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSSTI-TTKVFVNGVWMGV 62
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE
Sbjct: 63 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVEAQSLVLQK 122
Query: 135 -----LHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXD---CSTAWGIKF---------- 176
L++ G ++ +Q L C T ++
Sbjct: 123 KHVRWLNQGHNDDGEDFKWQHLAKSGVIEMLDAEEEETVMICMTPEDLETQGRTNSSAKD 182
Query: 177 -----------LVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
L + K P ++THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 183 TNDPDFDPAARLKPTLGKSAPHEWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 239
>D5JC24_9HOMO (tr|D5JC24) RNA polymerase II second largest subunit (Fragment)
OS=Lactarius subgerardii GN=rpb2 PE=3 SV=1
Length = 244
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 106/240 (44%), Gaps = 41/240 (17%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 4 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSSTI-TTKVFVNGVWMGV 62
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE
Sbjct: 63 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVEAQQLVLQK 122
Query: 135 -----LHKIKAFKGGNYTFQSL--------LDKXXXXXXXXXXXXD--------CSTAWG 173
L++ G ++ +Q L LD + T G
Sbjct: 123 KHVRWLNQGSTDDGEDFKWQHLAKSGVIEMLDAEEEETVMICMTPEDLETPRLQGHTQSG 182
Query: 174 IK-----------FLVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
K L + K P ++THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 183 AKNDTDPDFDPAARLKPTLGKSAPHEWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 242
>Q2HXY9_9AGAR (tr|Q2HXY9) RNA polymerase II second largest subunit (Fragment)
OS=Lyophyllum leucophaeatum GN=RPB2 PE=3 SV=2
Length = 358
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 108/237 (45%), Gaps = 42/237 (17%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S P+I+ L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 126 GQACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSS-TPCTKVFVNGVWMGV 184
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN----LHK 137
D V +V + RD ++KE+R++ DAGR+ RPL +VEN L K
Sbjct: 185 HRDPANLVKTIKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVENQQLALQK 244
Query: 138 --IKAFKGG------NYTFQS--------LLDKXXXXXXXXXXXXD------------CS 169
I+ G Y ++S LLD +
Sbjct: 245 KHIRWLNNGYNKDGEEYKWESLVKGGVVELLDAEEEETVMISMTPEDLENSRLQQSGVDP 304
Query: 170 TAWGIKF-----LVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQ 221
A ++F L AG++ +THCE+ S +LG+ IIPF +H+ + R YQ
Sbjct: 305 NANDVEFDPAARLKAGINTHT---WTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 358
>Q5S3L7_9HOMO (tr|Q5S3L7) DNA-directed RNA polymerase (Fragment) OS=Suillus
pictus GN=RPB2 PE=3 SV=1
Length = 899
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/245 (29%), Positives = 112/245 (45%), Gaps = 38/245 (15%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S P+I+ L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 318 GQACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSSTPCT-KVFVNGVWMGV 376
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN----LHK 137
D V +V + RD +++E+R++ DAGR+ RPL +VEN L K
Sbjct: 377 HRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLALQK 436
Query: 138 --IKAFKGG-------NYTFQSLLDKXXXXXXXXXXXXD---CSTAWGI---KFLVAGVD 182
IK G + ++ L+ C T + + AG+D
Sbjct: 437 KHIKWLNQGYREDDGEEFKWEQLVKNGIIELLDAEEEETVMICMTPEDLENSRLQSAGID 496
Query: 183 KKQ------PL----------KYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHS 226
Q P +THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 497 PHQNDGDYDPAARLKAGINSHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS-AMG 555
Query: 227 QQAIG 231
+QA+G
Sbjct: 556 KQAMG 560
>Q7Z836_9AGAR (tr|Q7Z836) RNA polymerase II second largest subunit (Fragment)
OS=Galerina semilanceata GN=RPB2 PE=3 SV=1
Length = 240
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 106/239 (44%), Gaps = 43/239 (17%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S L P+I+ L + G++ L ++ H+ +VF+NG W+GV
Sbjct: 5 GQACGLVKNLALMACISVGSLSAPIIEFLEEWGLESLEENAHSTTP-CTRVFVNGVWLGV 63
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D+ V +V + RD ++KE+R+++DAGR+ RPL +VEN
Sbjct: 64 HRDAANLVKTLKRLRRRDDISPEVSVVRDIREKELRLYSDAGRVCRPLFIVENQQLALQK 123
Query: 135 -----LHKIKAFKGGNYTFQ--------SLLD-KXXXXXXXXXXXXDCSTAWGIKFLVAG 180
LH G + + LLD + D + + +G
Sbjct: 124 KHVRWLHNGVNDSGAEFKWHDMVIGGIIELLDAEEEETVMISMTPEDLENS---RLQQSG 180
Query: 181 VDK-----------------KQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
VD +THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 181 VDPHANNEGEFDPAARLKAGTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 239
>Q7Z7Y2_9AGAR (tr|Q7Z7Y2) RNA polymerase II second largest subunit (Fragment)
OS=Clitopilus aureicystidiatus GN=RPB2 PE=3 SV=1
Length = 238
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 108/238 (45%), Gaps = 42/238 (17%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S P+I+ L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 5 GQACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGV 63
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D V +V + RD ++KE+R++ DAGR+ RPL +VEN
Sbjct: 64 HRDPANLVKTLRKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVENQQLALQK 123
Query: 135 -----LHKIKAFKGGNYTFQSLLD---------KXXXXXXXXXXXXDCSTA----WGIKF 176
L++ +G Y ++ L+ + D T+ GI
Sbjct: 124 KHVKWLNEGMNDEGDEYKWEHLVKGGIVELLDAEEEETVMISMTPEDLETSRLQQSGINT 183
Query: 177 ------------LVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
L AG++ +THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 184 NPNDGDFDPAARLKAGINSH---TWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 238
>Q207G7_9APHY (tr|Q207G7) DNA-directed RNA polymerase (Fragment) OS=Polyporus
squamosus GN=rpb2 PE=3 SV=1
Length = 898
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/244 (28%), Positives = 112/244 (45%), Gaps = 37/244 (15%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNL++ +S L P+I+ L + G++ L ++TH KVF+NG W+GV
Sbjct: 310 GQACGLVKNLSLMSCISVGSLSAPVIEFLEEWGLESLEENTHASTPCT-KVFVNGVWMGV 368
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVV--------- 132
D V +V + RD +++E+R++ DAGR+ RPL +V
Sbjct: 369 HRDPAGLVRTLRRLRRKDDINCEVSVVRDIRERELRLYTDAGRVCRPLFIVEEQQLLVQK 428
Query: 133 ---ENLHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXD---CSTAWGI---KFLVAGVDK 183
ENL + K Y + +++ + C T + + AG+D
Sbjct: 429 KHIENLVRSKEDPSYEYNWDNMIKEGVIELLDAEEEETVMICMTPEDLENSRLQAAGIDP 488
Query: 184 -------------KQPL---KYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQ 227
K P +THCE+ S +LG+ IIPF +H+ + R YQ+ +
Sbjct: 489 HADEEHVDPSARLKAPTFSHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAM-GK 547
Query: 228 QAIG 231
QA+G
Sbjct: 548 QAMG 551
>C0K1A6_9HOMO (tr|C0K1A6) RNA polymerase II subunit 2 (Fragment) OS=Scleroderma
sp. AWW311 GN=RPB2 PE=3 SV=1
Length = 362
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 105/236 (44%), Gaps = 37/236 (15%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S P+I+ L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 128 GQACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGV 186
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVENLHKIKAF 141
D V +V + RD +++E+R++ DAGR+ RPL +VEN +
Sbjct: 187 HRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLVLQK 246
Query: 142 K-------------GGNYTFQSLLDKXXXXXXXXXXXXD---CSTAWGI---KFLVAGVD 182
K G + ++ L+ C T G+ + AG++
Sbjct: 247 KHIKWLSQGYRDDDGEEFKWEQLIKNGIIELLDAEEEETVMICMTPEGLENSRLQSAGIN 306
Query: 183 ----------------KKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
K ++HCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 307 PYENDGDYDPTARLKAKTSAHTWSHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS 362
>A3QRR8_9HOMO (tr|A3QRR8) RNA polymerase II second largest subunit (Fragment)
OS=Russula ochricompacta GN=RPB2 PE=3 SV=1
Length = 246
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 107/242 (44%), Gaps = 43/242 (17%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 5 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSST-LTTKVFVNGVWMGV 63
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE+
Sbjct: 64 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVEDQQLVLQK 123
Query: 135 -----LHKIKAFKGGNYTFQSL--------LDKXXXXXXXX-XXXXDCSTAW-------- 172
L++ G ++ +Q L LD D TA
Sbjct: 124 KHVRWLNQGTTDDGEDFKWQHLAKSGVIEMLDAEEEETVMICMTPEDLETARIQGRGMGS 183
Query: 173 -------GIKFLVAGVDKKQPLK-----YTHCELDMSFLLGLSCGIIPFANHDHARRVLY 220
+ F A K P K +THCE+ S +LG+ IIPF +H+ + R Y
Sbjct: 184 STNNNSNDVDFDPAARLKPSPGKSAPHVWTHCEIHPSMILGICASIIPFPDHNQSPRNTY 243
Query: 221 QA 222
Q+
Sbjct: 244 QS 245
>D2U5A8_9CEST (tr|D2U5A8) RNA polymerase II (Fragment) OS=Taenia hydatigena
GN=rpb2 PE=3 SV=1
Length = 451
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 106/220 (48%), Gaps = 14/220 (6%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G GLVKNLA+ +S P+++ L + M+ L + + + + K+F+NG WVG+
Sbjct: 125 GSAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIGKTCKIFVNGCWVGI 184
Query: 82 CEDSN-LFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVE------- 133
+ L V +V + RD + +E+RI+ DAGRI RPL++VE
Sbjct: 185 HNSPDHLMVTLRKLRRQVDVIVSEVSMVRDYRDQEIRIYTDAGRICRPLVIVEKGKLMLK 244
Query: 134 --NLHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVDKKQPLKYTH 191
++ ++K + +Q L+ A G + A V+ + +TH
Sbjct: 245 RSHIEQLKNRAYNRFCWQELVLYGVVEYIDILEEETAMIAMGPAEMQAAVNYCK--THTH 302
Query: 192 CELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
CE+ S +LG+ IIPF +H+ + R YQ+ +QA+G
Sbjct: 303 CEIHPSMILGICASIIPFCDHNQSPRNTYQS-AMGKQAMG 341
>A3QRU4_9HOMO (tr|A3QRU4) RNA polymerase II second largest subunit (Fragment)
OS=Russula albonigra GN=RPB2 PE=3 SV=1
Length = 240
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 105/237 (44%), Gaps = 38/237 (16%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 4 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSST-LTTKVFVNGVWMGV 62
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVENLHKIKAF 141
D + +V I RD +++E+R++ D GR+ RPL +VE+ +
Sbjct: 63 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVEDQQLVLQK 122
Query: 142 K------------GGNYTFQ--------SLLDKXXXXXXXX-XXXXDCSTA----WGIKF 176
K G + +Q LLD + TA GI
Sbjct: 123 KHVRWLTQGTTDDGEEFKWQHLAKSGVIELLDAEEEETVMICMTPEELETARLHGRGIAV 182
Query: 177 -----------LVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
L ++ P +THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 183 PAPADFDPAARLKPSLENSAPHIWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 239
>D5JC28_9HOMO (tr|D5JC28) RNA polymerase II second largest subunit (Fragment)
OS=Lactarius subgerardii GN=rpb2 PE=3 SV=1
Length = 244
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 106/240 (44%), Gaps = 41/240 (17%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 4 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSSTI-TTKVFVNGVWMGV 62
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE
Sbjct: 63 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIREQELRLYTDPGRVCRPLFIVEAQQLVLQK 122
Query: 135 -----LHKIKAFKGGNYTFQSL--------LDKXXXXXXXXXXXXD--------CSTAWG 173
L++ G ++ +Q L LD + T G
Sbjct: 123 KHVRWLNQGSTDDGEDFKWQHLAKSGVIEMLDAEEEETVMICMTPEDLETPRLQGHTQSG 182
Query: 174 IK-----------FLVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
K L + K P ++THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 183 AKNDTDPDFDPAARLKPTLGKSAPHEWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 242
>D5JC62_9HOMO (tr|D5JC62) RNA polymerase II second largest subunit (Fragment)
OS=Lactarius volemus GN=rpb2 PE=3 SV=1
Length = 245
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 106/241 (43%), Gaps = 42/241 (17%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 4 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSSTI-TTKVFVNGVWMGV 62
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE+
Sbjct: 63 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVESQQLVLQK 122
Query: 135 -----LHKIKAFKGGNYTFQSL--------LDKXXXXXXXXXXXXD--------CSTAWG 173
L++ G ++ +Q L LD + T G
Sbjct: 123 KHVRWLNQGSTDDGDDFKWQHLTKSGVIEMLDAEEEETVMICMTPEDLETPRLQGRTQSG 182
Query: 174 IKF------------LVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQ 221
+ L + K P +THCE+ S +LG+ IIPF +H+ + R YQ
Sbjct: 183 SRIDTNDPDFDPAARLKPTLGKSAPHVWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 242
Query: 222 A 222
+
Sbjct: 243 S 243
>A3QRR6_9HOMO (tr|A3QRR6) RNA polymerase II second largest subunit (Fragment)
OS=Russula camarophylla GN=RPB2 PE=3 SV=1
Length = 244
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/239 (28%), Positives = 106/239 (44%), Gaps = 40/239 (16%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 6 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSST-LTTKVFVNGVWMGV 64
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE+
Sbjct: 65 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVEDQQLVLQK 124
Query: 135 -----LHKIKAFKGGNYTFQ--------SLLDKXXXXXXXX-XXXXDCSTAW-------G 173
L + G ++ +Q LLD + TA
Sbjct: 125 RHVRWLTQGTTDDGEDFKWQHLAKSGVIELLDAEEEETVMICMTPEELETARLLSRGMSS 184
Query: 174 IKFLVAGVDKKQPLK----------YTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
+K A D LK +THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 185 VKPSAADFDPAARLKPSLENSAPHAWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 243
>A3QRT7_9HOMO (tr|A3QRT7) RNA polymerase II second largest subunit (Fragment)
OS=Russula vesca GN=RPB2 PE=3 SV=1
Length = 243
Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 106/237 (44%), Gaps = 38/237 (16%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 6 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSST-LTTKVFVNGVWMGV 64
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVENLHKIKAF 141
D + +V I RD +++E+R++ D GR+ RPL +VE+ +
Sbjct: 65 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVEDQQLVLQK 124
Query: 142 K------------GGNYTFQ--------SLLDKXXXXXXXX-XXXXDCSTA----WGI-- 174
K G ++ +Q LLD + TA GI
Sbjct: 125 KHVRWLTQGTTDDGEDFKWQHLTKSGVIELLDAEEEETVMICMMREELETARLHGRGIIN 184
Query: 175 ---------KFLVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
L ++ P +THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 185 KSAADFDPAARLKPSLENSAPHVWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 241
>A3QRU1_9HOMO (tr|A3QRU1) RNA polymerase II second largest subunit (Fragment)
OS=Russula earlei GN=RPB2 PE=3 SV=1
Length = 245
Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/239 (28%), Positives = 106/239 (44%), Gaps = 40/239 (16%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 6 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSST-LTTKVFVNGVWMGV 64
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVENLHKIKAF 141
D + +V I RD +++E+R++ D GR+ RPL +VE+ +
Sbjct: 65 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVEDQQLVLQK 124
Query: 142 K------------GGNYTFQ--------SLLDKXXXXXXXX-XXXXDCSTA-------WG 173
K G ++ +Q LLD + TA
Sbjct: 125 KHVRWLTQGITDDGEDFKWQHLTKSGVIELLDAEEEETVMICMTPEELETARLHSRGMPS 184
Query: 174 IKFLVAGVDKKQPLK----------YTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
+K A D LK +THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 185 VKASAADFDPAVRLKPSSENSAPHVWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 243
>Q27S76_9AGAR (tr|Q27S76) DNA-directed RNA polymerase (Fragment) OS=Lepista irina
GN=rpb2 PE=3 SV=2
Length = 659
Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 111/247 (44%), Gaps = 43/247 (17%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S P+I+ L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 129 GQACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSST-PCTKVFVNGVWMGV 187
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN----LHK 137
D V +V + RD ++KE+R++ DAGR+ RPL +VEN L K
Sbjct: 188 HRDPANLVKTIKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVENQQLALQK 247
Query: 138 --IKAFKGG------NYTFQSLLD---------KXXXXXXXXXXXXDCSTAWGIKFLVAG 180
I+ G Y ++ L+ + D + + +G
Sbjct: 248 KHIRWLNNGYNDDGEEYKWEQLIKGGIIELLDAEEEETVMISMTPEDLENS---RLQQSG 304
Query: 181 VDKK----------------QPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQK 224
VD + +THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 305 VDPQVNDAEFDPAARLKAGINSHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS-A 363
Query: 225 HSQQAIG 231
+QA+G
Sbjct: 364 MGKQAMG 370
>A3QRR0_9HOMO (tr|A3QRR0) RNA polymerase II second largest subunit (Fragment)
OS=Lactarius volemus GN=RPB2 PE=4 SV=1
Length = 242
Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 104/241 (43%), Gaps = 42/241 (17%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 3 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSSTI-XTKVFVNGVWMGV 61
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE+
Sbjct: 62 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVESQQLVLQK 121
Query: 135 -----LHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXD---CSTAWGIKF---------- 176
L++ G ++ +Q L C T ++
Sbjct: 122 KHVRWLNQGSTDDGDDFKWQHLTKSGVIEMLDAEEEETVMICMTPEDLETPRLQGRTQSG 181
Query: 177 ---------------LVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQ 221
L + K P +THCE+ S +LG+ IIPF +H+ + R YQ
Sbjct: 182 SRIDTNDPDFDPAARLKPTLGKSAPHVWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 241
Query: 222 A 222
+
Sbjct: 242 S 242
>D3BHD6_POLPA (tr|D3BHD6) DNA-directed RNA polymerase OS=Polysphondylium pallidum
PN500 GN=rpb2 PE=3 SV=1
Length = 1965
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 105/228 (46%), Gaps = 18/228 (7%)
Query: 11 STQGRLEMLDT-----HGENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKL--VDDT 62
ST L L+T G+ CGLVKNLA+ +S +P+++ L + + L + D+
Sbjct: 465 STLSHLRRLNTPIGREEGQACGLVKNLAMMAYISVGSASQPILEFLEEWSTENLEEITDS 524
Query: 63 HTKLDEKYKVFLNGEWVGVCEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADA 122
T L+ K+F+NG WVG+ + + +V I RD ++KE+R++ D+
Sbjct: 525 STILNAT-KIFVNGMWVGIHHQPDHLLKTLRVLRRCGDVSVEVSIVRDIREKELRLYTDS 583
Query: 123 GRILRPLLVVENL-HKIKAFKG--------GNYTFQSLLDKXXXXXXXXXXXXDCSTAWG 173
GR RPL VV++ +K+ K Y + L+ A
Sbjct: 584 GRCCRPLFVVDDKDYKLTIKKSHIRQLDSDPEYKWLDLITDGLVEYIDTEEEETVMIAMT 643
Query: 174 IKFLVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQ 221
L+ + YTHCE+ S +LG+ C IIPF +H+ + R YQ
Sbjct: 644 PADLIPSTTEIVTHNYTHCEIHPSMILGICCSIIPFPDHNQSPRNTYQ 691
>A3QRT3_9HOMO (tr|A3QRT3) RNA polymerase II second largest subunit (Fragment)
OS=Russula virescens GN=RPB2 PE=3 SV=1
Length = 241
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 104/239 (43%), Gaps = 40/239 (16%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 4 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSST-LTTKVFVNGVWMGV 62
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVENLHKIKAF 141
D + +V I RD +++E+R++ D GR+ RPL +VE+ +
Sbjct: 63 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVEDQQLVLQK 122
Query: 142 K------------GGNYTFQ--------SLLDKXXXXXXXXXXXXD-------------C 168
K G ++ +Q LLD +
Sbjct: 123 KHVRWLTQGTTDDGEDFKWQHLTKSGVIELLDAEEEETVMICMMPEELETARLHGRGMLS 182
Query: 169 STAWGIKF-----LVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
S F L ++ P +THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 183 SKPNAADFDPAARLKPSLENSAPHIWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 241
>D2U5A1_9CEST (tr|D2U5A1) RNA polymerase II (Fragment) OS=Echinococcus canadensis
GN=rpb2 PE=3 SV=1
Length = 451
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 106/220 (48%), Gaps = 14/220 (6%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G GLVKNLA+ +S P+++ L + M+ L + + + + K+F+NG WVG+
Sbjct: 125 GSAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIGKTCKIFVNGCWVGI 184
Query: 82 CEDSN-LFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVE------- 133
+ L V +V + RD + +E+RI+ DAGRI RPL++VE
Sbjct: 185 HNSPDHLMVTLRKLRRQVDVIVSEVSMVRDYRDQEIRIYTDAGRICRPLVIVEKGKLMLK 244
Query: 134 --NLHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVDKKQPLKYTH 191
++ ++K + +Q L+ A G + A V+ + +TH
Sbjct: 245 RTHIDQLKNRAYNRFCWQELVLYGVVEYIDILEEETAMIAMGPAEMQAAVNYCK--THTH 302
Query: 192 CELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
CE+ S +LG+ IIPF +H+ + R YQ+ +QA+G
Sbjct: 303 CEIHPSMILGICASIIPFCDHNQSPRNTYQS-AMGKQAMG 341
>D2U5A0_9CEST (tr|D2U5A0) RNA polymerase II (Fragment) OS=Echinococcus ortleppi
GN=rpb2 PE=3 SV=1
Length = 451
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 106/220 (48%), Gaps = 14/220 (6%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G GLVKNLA+ +S P+++ L + M+ L + + + + K+F+NG WVG+
Sbjct: 125 GSAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIGKTCKIFVNGCWVGI 184
Query: 82 CEDSN-LFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVE------- 133
+ L V +V + RD + +E+RI+ DAGRI RPL++VE
Sbjct: 185 HNSPDHLMVTLRKLRRQVDVIVSEVSMVRDYRDQEIRIYTDAGRICRPLVIVEKGKLMLK 244
Query: 134 --NLHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVDKKQPLKYTH 191
++ ++K + +Q L+ A G + A V+ + +TH
Sbjct: 245 RTHIDQLKNRAYNRFCWQELVLYGVVEYIDILEEETAMIAMGPAEMQAAVNYCK--THTH 302
Query: 192 CELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
CE+ S +LG+ IIPF +H+ + R YQ+ +QA+G
Sbjct: 303 CEIHPSMILGICASIIPFCDHNQSPRNTYQS-AMGKQAMG 341
>D2U599_9CEST (tr|D2U599) RNA polymerase II (Fragment) OS=Echinococcus equinus
GN=rpb2 PE=3 SV=1
Length = 451
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 106/220 (48%), Gaps = 14/220 (6%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G GLVKNLA+ +S P+++ L + M+ L + + + + K+F+NG WVG+
Sbjct: 125 GSAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIGKTCKIFVNGCWVGI 184
Query: 82 CEDSN-LFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVE------- 133
+ L V +V + RD + +E+RI+ DAGRI RPL++VE
Sbjct: 185 HNSPDHLMVTLRKLRRQVDVIVSEVSMVRDYRDQEIRIYTDAGRICRPLVIVEKGKLMLK 244
Query: 134 --NLHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVDKKQPLKYTH 191
++ ++K + +Q L+ A G + A V+ + +TH
Sbjct: 245 RTHIDQLKNRAYNRFCWQELVLYGVVEYIDILEEETAMIAMGPAEMQAAVNYCK--THTH 302
Query: 192 CELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
CE+ S +LG+ IIPF +H+ + R YQ+ +QA+G
Sbjct: 303 CEIHPSMILGICASIIPFCDHNQSPRNTYQS-AMGKQAMG 341
>D2U598_ECHGR (tr|D2U598) RNA polymerase II (Fragment) OS=Echinococcus granulosus
GN=rpb2 PE=3 SV=1
Length = 451
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 106/220 (48%), Gaps = 14/220 (6%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G GLVKNLA+ +S P+++ L + M+ L + + + + K+F+NG WVG+
Sbjct: 125 GSAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIGKTCKIFVNGCWVGI 184
Query: 82 CEDSN-LFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVE------- 133
+ L V +V + RD + +E+RI+ DAGRI RPL++VE
Sbjct: 185 HNSPDHLMVTLRKLRRQVDVIVSEVSMVRDYRDQEIRIYTDAGRICRPLVIVEKGKLMLK 244
Query: 134 --NLHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVDKKQPLKYTH 191
++ ++K + +Q L+ A G + A V+ + +TH
Sbjct: 245 RTHIDQLKNRAYNRFCWQELVLYGVVEYIDILEEETAMIAMGPAEMQAAVNYCK--THTH 302
Query: 192 CELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
CE+ S +LG+ IIPF +H+ + R YQ+ +QA+G
Sbjct: 303 CEIHPSMILGICASIIPFCDHNQSPRNTYQS-AMGKQAMG 341
>D2U597_9CEST (tr|D2U597) RNA polymerase II (Fragment) OS=Echinococcus felidis
GN=rpb2 PE=3 SV=1
Length = 451
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 106/220 (48%), Gaps = 14/220 (6%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G GLVKNLA+ +S P+++ L + M+ L + + + + K+F+NG WVG+
Sbjct: 125 GSAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIGKTCKIFVNGCWVGI 184
Query: 82 CEDSN-LFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVE------- 133
+ L V +V + RD + +E+RI+ DAGRI RPL++VE
Sbjct: 185 HNSPDHLMVTLRKLRRQVDVIVSEVSMVRDYRDQEIRIYTDAGRICRPLVIVEKGKLMLK 244
Query: 134 --NLHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVDKKQPLKYTH 191
++ ++K + +Q L+ A G + A V+ + +TH
Sbjct: 245 RTHIDQLKNRAYNRFCWQELVLYGVVEYIDILEEETAMIAMGPAEMQAAVNYCK--THTH 302
Query: 192 CELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
CE+ S +LG+ IIPF +H+ + R YQ+ +QA+G
Sbjct: 303 CEIHPSMILGICASIIPFCDHNQSPRNTYQS-AMGKQAMG 341
>D2U596_ECHOL (tr|D2U596) RNA polymerase II (Fragment) OS=Echinococcus
oligarthrus GN=rpb2 PE=3 SV=1
Length = 451
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 106/220 (48%), Gaps = 14/220 (6%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G GLVKNLA+ +S P+++ L + M+ L + + + + K+F+NG WVG+
Sbjct: 125 GSAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIGKTCKIFVNGCWVGI 184
Query: 82 CEDSN-LFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVE------- 133
+ L V +V + RD + +E+RI+ DAGRI RPL++VE
Sbjct: 185 HNSPDHLMVTLRKLRRQVDVIVSEVSMVRDYRDQEIRIYTDAGRICRPLVIVEKGKLMLK 244
Query: 134 --NLHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVDKKQPLKYTH 191
++ ++K + +Q L+ A G + A V+ + +TH
Sbjct: 245 RTHIDQLKNRAYNRFCWQELVLYGVVEYIDILEEETAMIAMGPAEMQAAVNYCK--THTH 302
Query: 192 CELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
CE+ S +LG+ IIPF +H+ + R YQ+ +QA+G
Sbjct: 303 CEIHPSMILGICASIIPFCDHNQSPRNTYQS-AMGKQAMG 341
>D2U595_9CEST (tr|D2U595) RNA polymerase II (Fragment) OS=Echinococcus vogeli
GN=rpb2 PE=3 SV=1
Length = 451
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 106/220 (48%), Gaps = 14/220 (6%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G GLVKNLA+ +S P+++ L + M+ L + + + + K+F+NG WVG+
Sbjct: 125 GSAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIGKTCKIFVNGCWVGI 184
Query: 82 CEDSN-LFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVE------- 133
+ L V +V + RD + +E+RI+ DAGRI RPL++VE
Sbjct: 185 HNSPDHLMVTLRKLRRQVDVIVSEVSMVRDYRDQEIRIYTDAGRICRPLVIVEKGKLMLK 244
Query: 134 --NLHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVDKKQPLKYTH 191
++ ++K + +Q L+ A G + A V+ + +TH
Sbjct: 245 RTHIDQLKNRAYNRFCWQELVLYGVVEYIDILEEETAMIAMGPAEMQAAVNYCK--THTH 302
Query: 192 CELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
CE+ S +LG+ IIPF +H+ + R YQ+ +QA+G
Sbjct: 303 CEIHPSMILGICASIIPFCDHNQSPRNTYQS-AMGKQAMG 341
>A9Q164_9AGAR (tr|A9Q164) RNA polymerase II second largest subunit (Fragment)
OS=Trichopilus porphyrophaeus GN=RPB2 PE=3 SV=1
Length = 358
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 108/237 (45%), Gaps = 42/237 (17%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S P+I+ L + G++ L ++ H++ KVF+NG W+GV
Sbjct: 126 GQACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSQTS-CTKVFVNGVWMGV 184
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN----LHK 137
D V +V + RD ++KE+R++ DAGR+ RPL +VEN L K
Sbjct: 185 HRDPANLVKTIKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVENQQLSLQK 244
Query: 138 ------IKAF--KGGNYTFQ---------------------SLLDKXXXXXXXXXXXXDC 168
++ + +G Y ++ S+ + D
Sbjct: 245 KHVKWLVEGYNDEGEEYKWEHLVKGGVVELLDAEEEETVMISMTPEDLENSRLQQSGIDT 304
Query: 169 STAWG----IKFLVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQ 221
S G L AG++ +THCE+ S +LG+ IIPF +H+ + R YQ
Sbjct: 305 SANDGEFDPAARLKAGINSH---TWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 358
>D5JBX8_9HOMO (tr|D5JBX8) RNA polymerase II second largest subunit (Fragment)
OS=Lactarius chiapanensis GN=rpb2 PE=3 SV=1
Length = 246
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 107/245 (43%), Gaps = 49/245 (20%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S L P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 4 GQACGLVKNLALMATISVGSLSGPIIDFLEEWGLESLEENAHSSTI-TTKVFVNGVWMGV 62
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE+
Sbjct: 63 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVESQQLVLQK 122
Query: 135 -----LHKIKAFKGGNYTFQSL--------LD-------------------KXXXXXXXX 162
L++ G ++ +Q L LD +
Sbjct: 123 KHVRWLNQGATDDGEDFKWQHLAKSGVIEMLDAEEEETVMICMTPEDLEAPRLQGRGVQS 182
Query: 163 XXXXDCSTAWGIKFLVAGVDKKQPLK-----YTHCELDMSFLLGLSCGIIPFANHDHARR 217
D S A F A K P K +THCE+ S +LG+ IIPF +H+ + R
Sbjct: 183 GSNNDTSAA---DFDPAARLKPTPGKSAPHIWTHCEIHPSMILGICASIIPFPDHNQSPR 239
Query: 218 VLYQA 222
YQ+
Sbjct: 240 NTYQS 244
>C4Q1D7_SCHMA (tr|C4Q1D7) DNA-directed RNA polymerase OS=Schistosoma mansoni
GN=Smp_130680 PE=3 SV=1
Length = 1304
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 106/222 (47%), Gaps = 18/222 (8%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G GLVKNLA+ +S P+++ L + M+ L + + + + K+F+NG WVG+
Sbjct: 643 GHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIGKTCKIFVNGCWVGI 702
Query: 82 -CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------ 134
+L +V + RD + +E+RI+ DAGRI RPL++VE
Sbjct: 703 HSSPDHLMGTLRKLRRQVDVIVSEVSMIRDYRDQEIRIYTDAGRICRPLVIVEKGKLLLK 762
Query: 135 -----LHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVDKKQPLKY 189
L K KA+ Y++Q L+ A G + A V+ + +
Sbjct: 763 RSHIELLKDKAY--NRYSWQDLVLSGVVEYIDTLEEETVMIAMGPAEMQAAVNYCK--TH 818
Query: 190 THCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
THCE+ S +LG+ IIPF +H+ + R YQ+ +QA+G
Sbjct: 819 THCEIHPSMILGICASIIPFPDHNQSPRNTYQS-AMGKQAMG 859
>Q207G6_9APHY (tr|Q207G6) DNA-directed RNA polymerase (Fragment) OS=Pycnoporus
sp. ZW02.30 GN=rpb2 PE=3 SV=1
Length = 896
Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 110/243 (45%), Gaps = 36/243 (14%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNL++ +S L P+I+ L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 310 GQACGLVKNLSLMSCISVGSLSAPVIEFLEEWGLESLEENAHSSTPCT-KVFVNGVWMGV 368
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVV--------- 132
D V +V + RD +++E+R++ D GR+ RPL +V
Sbjct: 369 HRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDPGRVCRPLFIVENQQLLLQK 428
Query: 133 ---ENLHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXD---CSTAWGI---KFLVAGVDK 183
ENL + K Y + +L+ C T + + AG+D
Sbjct: 429 RHIENLVRGKEDPEFEYKWDNLIKDGVIELLDAEEEETVMICMTPEDLENSRLQAAGIDP 488
Query: 184 ------------KQPLK---YTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQ 228
K P +THCE+ S +LG+ IIPF +H+ + R YQ+ +Q
Sbjct: 489 HADAEFDPSARLKAPTNAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS-AMGKQ 547
Query: 229 AIG 231
A+G
Sbjct: 548 AMG 550
>A9Q160_9AGAR (tr|A9Q160) RNA polymerase II second largest subunit (Fragment)
OS=Entoloma sericeonitidum GN=RPB2 PE=3 SV=1
Length = 358
Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 108/237 (45%), Gaps = 42/237 (17%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S P+I+ L + G++ L ++ H++ KVF+NG W+GV
Sbjct: 126 GQACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSQTP-CTKVFVNGVWMGV 184
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN----LHK 137
D V +V + RD ++KE+R++ DAGR+ RPL +VEN L K
Sbjct: 185 HRDPANLVKTIKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVENQQLSLQK 244
Query: 138 --IKAF------KGGNYTFQSLLD---------KXXXXXXXXXXXXDCSTAWGIKFLVAG 180
IK +G Y ++ L+ + D T+ + +G
Sbjct: 245 KHIKWLIDGYNEEGEEYKWEHLVKGGVVELLDAEEEETVMISMTPEDLETS---RLQQSG 301
Query: 181 VDKKQ------PL----------KYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQ 221
+D P +THCE+ S +LG+ IIPF +H+ + R YQ
Sbjct: 302 IDTTNNDAEFDPAARLKAGINSHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 358
>C1ML14_MICPS (tr|C1ML14) DNA-directed RNA polymerase OS=Micromonas pusilla
CCMP1545 GN=MICPUCDRAFT_31670 PE=3 SV=1
Length = 1172
Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 104/224 (46%), Gaps = 16/224 (7%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNL++ LVS P+++ L + M+ L + + + + K+F+NG WVGV
Sbjct: 513 GQACGLVKNLSLMALVSVGSPSSPVLEFLEEWTMENLEEISPSVISHATKIFVNGVWVGV 572
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVE-------- 133
D V +V I D + +E+R++ D GR +RPL +VE
Sbjct: 573 HRDPADLVRTLRELRRKVDITTEVGIVHDIRLQELRLYTDYGRCIRPLFIVEDQRMKIKK 632
Query: 134 -NLHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLV-----AGVDKKQPL 187
N+ ++ +T+ L+ + I+ LV A +
Sbjct: 633 RNIEMLQEKDITGFTWNDLVSSGCIEYVDTEEEETTMISMTIEDLVQARLLANNETSVQH 692
Query: 188 KYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
YTHCE+ S +LG+ IIPF +H+ + R YQ+ +QA+G
Sbjct: 693 MYTHCEIHPSMILGICGSIIPFPDHNQSPRNTYQS-AMGKQAMG 735
>A3QRU8_9HOMO (tr|A3QRU8) RNA polymerase II second largest subunit (Fragment)
OS=Russula cyanoxantha GN=RPB2 PE=3 SV=1
Length = 243
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 103/238 (43%), Gaps = 39/238 (16%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 6 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSST-LTTKVFVNGVWMGV 64
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVENLHKIKAF 141
D + +V I RD +++E+R++ D GR+ RPL +VE+ +
Sbjct: 65 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVEDQQLVLQK 124
Query: 142 K------------GGNYTFQSLLDKXXXXXXXXXXXXD---CSTAWGIKF---------- 176
K G ++ +Q L C T ++
Sbjct: 125 KHVRWLTQGTTDDGEDFKWQHLAKSGVIELLDAEEEETVMICMTPEELETARLHGRGMPT 184
Query: 177 ------------LVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
L ++ P +THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 185 NKVAADFDPAARLKPSLENSAPHVWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 242
>A9Q142_9AGAR (tr|A9Q142) RNA polymerase II second largest subunit (Fragment)
OS=Lyophyllum anthracophilum GN=RPB2 PE=3 SV=1
Length = 358
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 105/234 (44%), Gaps = 36/234 (15%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S P+I+ L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 126 GQACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSS-TPCTKVFVNGVWMGV 184
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D V +V + RD ++KE+R++ DAGR+ RPL +VEN
Sbjct: 185 HRDPANLVKTIKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVENQQLALQK 244
Query: 135 -----LHKIKAFKGGNYTFQSLLD---------KXXXXXXXXXXXXDCSTAW----GIKF 176
L+ +G Y ++ L+ + D + GI
Sbjct: 245 KHVRWLNNGYNDEGEEYKWEQLVKGGVVELLDAEEEETVMISMTPEDLENSRLQQSGIDP 304
Query: 177 LV--AGVDKKQPLK-------YTHCELDMSFLLGLSCGIIPFANHDHARRVLYQ 221
L A D LK +THCE+ S +LG+ IIPF +H+ + R YQ
Sbjct: 305 LANDADFDPAARLKAGINSHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 358
>Q207G8_9HOMO (tr|Q207G8) DNA-directed RNA polymerase (Fragment) OS=Phaeolus
schweinitzii GN=rpb2 PE=3 SV=1
Length = 887
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 110/242 (45%), Gaps = 35/242 (14%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNL++ ++ L P+I+ L + G++ L ++ H+ + KVF+NG W+GV
Sbjct: 304 GQACGLVKNLSLMSCITVGTLSAPVIEFLEEWGLESLEENAHSTI-PCTKVFVNGVWMGV 362
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVENLHKIKAF 141
D V +V + RD +++E+R++ DAGR+ RPL +VEN +
Sbjct: 363 HRDPANLVKTIKKLRRKDDINAEVSVVRDIRERELRVYTDAGRVSRPLFIVENQQLLFTK 422
Query: 142 KGGNYTFQ---------SLLDKXXXXXXXXXXXXD----CSTAWGI---KFLVAGVD--- 182
K N S L K + C T + + GVD
Sbjct: 423 KHINLMLSTDEEKKLKWSALVKTGLIEMLDAEEEETVMICMTPEDLENSRLQSMGVDPHA 482
Query: 183 -----------KKQP--LKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQA 229
K P +THCE+ S +LG+ IIPF +H+ + R YQ+ +QA
Sbjct: 483 NDGDFDPAARLKANPNAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAM-GKQA 541
Query: 230 IG 231
+G
Sbjct: 542 MG 543
>Q1KLL5_9APHY (tr|Q1KLL5) DNA-directed RNA polymerase (Fragment)
OS=Hydnopolyporus fimbriatus GN=rpb2 PE=3 SV=1
Length = 689
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 111/247 (44%), Gaps = 44/247 (17%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S P+I+ L + G++ L ++ +T K VF+NG W+GV
Sbjct: 129 GQACGLVKNLALMACISVGSYSAPVIEFLEEWGLEALEENANTAASTK--VFVNGVWMGV 186
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D V +V + RD ++KE+R++ DAGR+ RPL +V+N
Sbjct: 187 HRDPANLVKTIKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVDNQELVLKK 246
Query: 135 -----LHKIKAFKGGNYTFQSLLD---------KXXXXXXXXXXXXDCSTAWGIKFLVAG 180
L + + +G + ++ L+ + D T+ + AG
Sbjct: 247 KHVRWLTQGETDEGEEFKWEQLVKGGVVELLDAEEEETVMISMTPEDLETS---RLQQAG 303
Query: 181 VDKK----------------QPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQK 224
VD +THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 304 VDPHANDGEFDPAARLKAGINAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS-A 362
Query: 225 HSQQAIG 231
+QA+G
Sbjct: 363 MGKQAMG 369
>A3QRS9_9HOMO (tr|A3QRS9) RNA polymerase II second largest subunit (Fragment)
OS=Russula heterophylla GN=RPB2 PE=4 SV=1
Length = 237
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 104/240 (43%), Gaps = 44/240 (18%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 2 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSST-LTTKVFVNGVWMGV 60
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVENLHKIKAF 141
D + +V I RD +++E+R++ D GR+ RPL +VE+ +
Sbjct: 61 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVEDQQLVLQK 120
Query: 142 K------------GGNYTFQ--------SLLDKXXXXXXX-------------------X 162
K G ++ +Q LLD
Sbjct: 121 KHVRWLTQGTTDDGEDFKWQHLAKSGVIELLDAEEEETVMICMMREELETARLHGRGMLN 180
Query: 163 XXXXDCSTAWGIKFLVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
D A +K ++ P +THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 181 KTATDFDPAARLK---PSLENSAPHVWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 237
>Q5S3M4_9HOMO (tr|Q5S3M4) DNA-directed RNA polymerase (Fragment)
OS=Hygrophoropsis aurantiaca GN=RPB2 PE=3 SV=1
Length = 863
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 110/248 (44%), Gaps = 44/248 (17%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S P+I+ L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 274 GQACGLVKNLALMSCISVGSYSAPVIEFLEEWGLESLEENAHSSTPCT-KVFVNGVWMGV 332
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVENLHKIKAF 141
D V +V + RD +++E+R++ DAGR+ RPL +VEN +
Sbjct: 333 HRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLMLQK 392
Query: 142 K-------------GGNYTFQSLLD---------KXXXXXXXXXXXXDCSTAWGIKFLVA 179
K G Y ++ L+ + D + + A
Sbjct: 393 KHVKWLNQGYREEDGEEYKWEQLIKGGIIELLDAEEEETVMISMTPEDLENS---RLQSA 449
Query: 180 GVDKKQ------PL----------KYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQ 223
G+D + P +THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 450 GIDPQSNDVDYDPAARLKAGINAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS- 508
Query: 224 KHSQQAIG 231
+QA+G
Sbjct: 509 AMGKQAMG 516
>D2U594_9CEST (tr|D2U594) RNA polymerase II (Fragment) OS=Echinococcus shiquicus
GN=rpb2 PE=3 SV=1
Length = 451
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 106/220 (48%), Gaps = 14/220 (6%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G GLVKNLA+ +S P+++ L + M+ L + + + + K+F+NG WVG+
Sbjct: 125 GSAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIGKTCKIFVNGCWVGI 184
Query: 82 CEDSN-LFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVE------- 133
+ L V +V + RD + +E+RI+ DAGRI RPL++VE
Sbjct: 185 HNSPDHLMVTLRKLRRQVDVIVSEVSMVRDYRGQEIRIYTDAGRICRPLVIVEKGKLMLK 244
Query: 134 --NLHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVDKKQPLKYTH 191
++ ++K + +Q L+ A G + A V+ + +TH
Sbjct: 245 RTHIDQLKNRAYNRFCWQELVLYGVVEYIDILEEETAMIAMGPAEMQAAVNYCK--THTH 302
Query: 192 CELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
CE+ S +LG+ IIPF +H+ + R YQ+ +QA+G
Sbjct: 303 CEIHPSMILGICASIIPFCDHNQSPRNTYQS-AMGKQAMG 341
>Q5S3M8_FLAVE (tr|Q5S3M8) DNA-directed RNA polymerase (Fragment) OS=Flammulina
velutipes GN=RPB2 PE=3 SV=1
Length = 691
Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 107/247 (43%), Gaps = 43/247 (17%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S P+I+ L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 114 GQACGLVKNLALMSCISVGSYSAPVIEFLEEWGLESLEENAHSTTPCT-KVFVNGVWMGV 172
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVENLHKIKAF 141
D V +V + RD ++KE+R++ D GR+ RPL +VEN +
Sbjct: 173 HRDPANLVKTIKKLRRKDDISPEVSLVRDIREKELRLYTDPGRVCRPLFIVENQQLVLQK 232
Query: 142 K------------GGNYTFQSLLDKXX---------------------XXXXXXXXXXDC 168
K G Y ++ L+ D
Sbjct: 233 KHVKWIVRGSDDDGQEYKWEQLIKTGIIELLDAEEEETVMISMSPDDLETSRNQQSGLDT 292
Query: 169 STAWG----IKFLVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQK 224
T G L AGV+ +THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 293 HTNEGEFDPAARLKAGVNAH---TWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS-A 348
Query: 225 HSQQAIG 231
+QA+G
Sbjct: 349 MGKQAMG 355
>A9Q145_LYODE (tr|A9Q145) RNA polymerase II second largest subunit (Fragment)
OS=Lyophyllum decastes GN=RPB2 PE=3 SV=1
Length = 358
Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 68/239 (28%), Positives = 105/239 (43%), Gaps = 46/239 (19%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S P+I+ L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 126 GQACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSS-TPCTKVFVNGVWMGV 184
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D V +V + RD ++KE+R++ DAGR+ RPL +VEN
Sbjct: 185 HRDPANLVKTIKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVENQQLALQK 244
Query: 135 -----LHKIKAFKGGNYTFQS--------LLDKXXXXXXXXXXXXDCSTAWGIKFLVAGV 181
L+ +G Y ++ LLD + +F +G+
Sbjct: 245 KHVRWLNNGYNDEGEEYKWEQLVKGGDVELLDAEEEATVMITMTPE--ELENSRFQQSGI 302
Query: 182 DKKQPL-------------------KYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQ 221
D PL +THCE+ S +LG+ IIPF +H+ + R YQ
Sbjct: 303 D---PLANDADFDPAARLKAGINSHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 358
>C0K1A1_9HOMO (tr|C0K1A1) RNA polymerase II subunit 2 (Fragment) OS=Scleroderma
meridionale GN=RPB2 PE=3 SV=1
Length = 362
Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 104/236 (44%), Gaps = 37/236 (15%)
Query: 23 GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S P+I+ L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 128 GQACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSS-TPCTKVFVNGVWMGV 186
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVENLHKIKAF 141
D V +V + RD + +E+R++ DAGR+ RPL +VEN +
Sbjct: 187 HRDPANLVKTIKKLRRKDDISPEVSVVRDIRXRELRLYTDAGRVCRPLFIVENQQLVLQK 246
Query: 142 K-------------GGNYTFQSLLDKXXXXXXXXXXXXD---CSTAWGI---KFLVAGVD 182
K G + ++ L+ C T G+ + AG++
Sbjct: 247 KHIKWLSQGYRDDDGEEFKWEQLIKNGIIELLDAEEEETVMICMTPEGLENSRLQSAGIN 306
Query: 183 ----------------KKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
K ++HCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 307 PYENDGXYDPTARLKAKTSAHTWSHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS 362
>A3QRS7_9HOMO (tr|A3QRS7) RNA polymerase II second largest subunit (Fragment)
OS=Russula gracillima GN=RPB2 PE=3 SV=1
Length = 239
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 101/237 (42%), Gaps = 38/237 (16%)
Query: 23 GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
G+ CGLVKNLA+ +S + P+ID L + G++ L ++ H+ KVF+NG W+GV
Sbjct: 4 GQACGLVKNLALMATISVGSMSGPIIDFLEEWGLESLEENAHSS-TLTTKVFVNGVWMGV 62
Query: 82 CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN------- 134
D + +V I RD +++E+R++ D GR+ RPL +VE
Sbjct: 63 HRDPTNLIETLKKLRRKDDVHPEVSIVRDIRERELRLYTDPGRVCRPLFIVEGQQLALQK 122
Query: 135 -----LHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWG------IKFLVAGVDK 183
L + G ++ +Q L G + L G+
Sbjct: 123 RHVRWLXQGTTDDGEDFKWQHLTKSGVIELLDAEEEETVMICMGREELENARLLGLGIKI 182
Query: 184 KQPLK------------------YTHCELDMSFLLGLSCGIIPFANHDHARRVLYQA 222
P + +THCE+ S +LG+ IIPF +H+ + R YQ+
Sbjct: 183 PAPAEFDPAARLKPANEASAPHVWTHCEIHASMILGICASIIPFPDHNQSPRNTYQS 239