Jatropha Genome Database

JcCB0469141.10
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0469141.10 + phase: 2 /pseudo/partial
         (99 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9RWJ4_RICCO (tr|B9RWJ4) WD-repeat protein, putative OS=Ricinus ...    75   2e-12
B9GMD9_POPTR (tr|B9GMD9) Predicted protein OS=Populus trichocarp...    66   1e-09
B9H0A2_POPTR (tr|B9H0A2) Predicted protein OS=Populus trichocarp...    64   5e-09
Q2V438_ARATH (tr|Q2V438) Putative uncharacterized protein At2g32...    60   7e-08
D7LF16_ARALY (tr|D7LF16) WD-40 repeat family protein OS=Arabidop...    60   7e-08
O48847_ARATH (tr|O48847) At2g32700/F24L7.16 OS=Arabidopsis thali...    60   7e-08
D7U3J7_VITVI (tr|D7U3J7) Whole genome shotgun sequence of line P...    54   8e-06
A5AYU2_VITVI (tr|A5AYU2) Putative uncharacterized protein OS=Vit...    53   8e-06

>B9RWJ4_RICCO (tr|B9RWJ4) WD-repeat protein, putative OS=Ricinus communis
           GN=RCOM_1020200 PE=4 SV=1
          Length = 782

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/39 (89%), Positives = 37/39 (94%)

Query: 1   LKHSNPMDSETSQPLLDARMCLLKPATNHPGQLVQGNSG 39
           +KHSNPMDSETSQPLLD+RM LLK ATNHPGQLVQGNSG
Sbjct: 145 MKHSNPMDSETSQPLLDSRMPLLKQATNHPGQLVQGNSG 183


>B9GMD9_POPTR (tr|B9GMD9) Predicted protein OS=Populus trichocarpa
           GN=POPTRDRAFT_750825 PE=4 SV=1
          Length = 773

 Score = 65.9 bits (159), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/39 (79%), Positives = 33/39 (84%)

Query: 1   LKHSNPMDSETSQPLLDARMCLLKPATNHPGQLVQGNSG 39
           +KHSN M+SETSQP LDARM LLK  TNHPGQLVQGN G
Sbjct: 140 MKHSNQMESETSQPHLDARMALLKSTTNHPGQLVQGNPG 178


>B9H0A2_POPTR (tr|B9H0A2) Predicted protein OS=Populus trichocarpa
           GN=POPTRDRAFT_817567 PE=4 SV=1
          Length = 782

 Score = 63.9 bits (154), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 31/39 (79%), Positives = 32/39 (82%)

Query: 1   LKHSNPMDSETSQPLLDARMCLLKPATNHPGQLVQGNSG 39
           LKHSN M+SETSQP LDARM LLK  TNH GQLVQGN G
Sbjct: 145 LKHSNQMESETSQPHLDARMALLKSTTNHSGQLVQGNHG 183


>Q2V438_ARATH (tr|Q2V438) Putative uncharacterized protein At2g32700.6
           OS=Arabidopsis thaliana GN=At2g32700 PE=4 SV=2
          Length = 785

 Score = 60.1 bits (144), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 28/37 (75%), Positives = 31/37 (83%)

Query: 1   LKHSNPMDSETSQPLLDARMCLLKPATNHPGQLVQGN 37
           +K  NPM+SETSQP LDARM LLK ATNH GQ+VQGN
Sbjct: 144 MKQPNPMNSETSQPHLDARMALLKSATNHHGQIVQGN 180


>D7LF16_ARALY (tr|D7LF16) WD-40 repeat family protein OS=Arabidopsis lyrata
           subsp. lyrata GN=ARALYDRAFT_482201 PE=4 SV=1
          Length = 786

 Score = 60.1 bits (144), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 28/37 (75%), Positives = 31/37 (83%)

Query: 1   LKHSNPMDSETSQPLLDARMCLLKPATNHPGQLVQGN 37
           +K  NPM+SETSQP LDARM LLK ATNH GQ+VQGN
Sbjct: 145 MKQPNPMNSETSQPHLDARMALLKSATNHHGQIVQGN 181


>O48847_ARATH (tr|O48847) At2g32700/F24L7.16 OS=Arabidopsis thaliana GN=At2g32700
           PE=1 SV=1
          Length = 787

 Score = 60.1 bits (144), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 28/37 (75%), Positives = 31/37 (83%)

Query: 1   LKHSNPMDSETSQPLLDARMCLLKPATNHPGQLVQGN 37
           +K  NPM+SETSQP LDARM LLK ATNH GQ+VQGN
Sbjct: 144 MKQPNPMNSETSQPHLDARMALLKSATNHHGQIVQGN 180


>D7U3J7_VITVI (tr|D7U3J7) Whole genome shotgun sequence of line PN40024,
           scaffold_5.assembly12x (Fragment) OS=Vitis vinifera
           GN=VIT_00028646001 PE=4 SV=1
          Length = 779

 Score = 53.5 bits (127), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/40 (70%), Positives = 31/40 (77%), Gaps = 1/40 (2%)

Query: 1   LKHSNPMDSETSQPLLDA-RMCLLKPATNHPGQLVQGNSG 39
           +KH + MDSETS  L+DA RM LLK ATNH  QLVQGNSG
Sbjct: 150 MKHPHSMDSETSPALIDANRMALLKSATNHQSQLVQGNSG 189


>A5AYU2_VITVI (tr|A5AYU2) Putative uncharacterized protein OS=Vitis vinifera
           GN=VITISV_026282 PE=4 SV=1
          Length = 774

 Score = 53.1 bits (126), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/40 (70%), Positives = 31/40 (77%), Gaps = 1/40 (2%)

Query: 1   LKHSNPMDSETSQPLLDA-RMCLLKPATNHPGQLVQGNSG 39
           +KH + MDSETS  L+DA RM LLK ATNH  QLVQGNSG
Sbjct: 145 MKHPHSMDSETSPALIDANRMALLKSATNHQSQLVQGNSG 184