Jatropha Genome Database

JcCB0466631.10
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0466631.10 + phase: 0 /partial
         (84 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9R8P9_RICCO (tr|B9R8P9) DNA binding protein, putative OS=Ricinu...    68   3e-10
B9H5J3_POPTR (tr|B9H5J3) Predicted protein OS=Populus trichocarp...    60   1e-07
B9GQ01_POPTR (tr|B9GQ01) Predicted protein OS=Populus trichocarp...    56   1e-06

>B9R8P9_RICCO (tr|B9R8P9) DNA binding protein, putative OS=Ricinus communis
           GN=RCOM_1601580 PE=3 SV=1
          Length = 231

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/98 (43%), Positives = 54/98 (55%), Gaps = 26/98 (26%)

Query: 1   NRRARSKRKQAALPTLT-----NTGESQAE--------------PAEDKNTNQDDTIAQM 41
           NRRARSKRKQ+AL         N  ESQ E               A++K T       Q+
Sbjct: 133 NRRARSKRKQSALAPSPPPPPPNNRESQVEVEPEPEPEPELELETAKEKRT-------QL 185

Query: 42  DESLEFMVNDMYFQNPEIQGIEQLIGRPEVTINYKPHW 79
           D++L FMVN MYF  PEI GI+QLIG+ EV ++Y  +W
Sbjct: 186 DDNLAFMVNHMYFHTPEIGGIDQLIGKAEVPMSYDSYW 223


>B9H5J3_POPTR (tr|B9H5J3) Predicted protein OS=Populus trichocarpa
           GN=POPTRDRAFT_864567 PE=3 SV=1
          Length = 216

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/92 (44%), Positives = 56/92 (60%), Gaps = 13/92 (14%)

Query: 1   NRRARSKRKQAALPTLTNTGESQA----EPAEDKNTNQDDTIAQMDESLEFMVNDMYFQN 56
           NRRARSKRKQ+AL  L N+GES+     EP ++K T  +D   Q DE    + + MY  +
Sbjct: 130 NRRARSKRKQSAL--LPNSGESEVETEIEPFKEKKTKPEDN--QPDEDATPVSDHMYLHS 185

Query: 57  PEIQGIEQLIGRPEVTINYKPHWP----DLFG 84
           P+I GI+QL+G+ E   +  P+W     DLFG
Sbjct: 186 PDI-GIDQLVGKMESPGSCIPYWQLEQYDLFG 216


>B9GQ01_POPTR (tr|B9GQ01) Predicted protein OS=Populus trichocarpa
           GN=POPTRDRAFT_815956 PE=3 SV=1
          Length = 215

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/92 (42%), Positives = 56/92 (60%), Gaps = 13/92 (14%)

Query: 1   NRRARSKRKQAALPTLTNTGESQA----EPAEDKNTNQDDTIAQMDESLEFMVNDMYFQN 56
           NRRARSKRKQ+A+  + N GES+     E  ++K T  +D+  Q DE+   M + MYF +
Sbjct: 129 NRRARSKRKQSAV--VPNNGESEMETDIESLKEKKTRAEDS--QPDENTTPMADHMYFNS 184

Query: 57  PEIQGIEQLIGRPEVTINYKPHWP----DLFG 84
           P+I G +QL+G+ E   +  P+W     DLFG
Sbjct: 185 PDI-GFDQLMGKIESPGSCIPYWQMEQYDLFG 215