Jatropha Genome Database

JcCB0456251.10
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0456251.10 - phase: 2 /pseudo/partial
         (185 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9RN40_RICCO (tr|B9RN40) Protein translocase subunit secA OS=Ric...   119   2e-25
B9I9A8_POPTR (tr|B9I9A8) Protein translocase subunit secA OS=Pop...   109   1e-22
D7U2U1_VITVI (tr|D7U2U1) Whole genome shotgun sequence of line P...   107   6e-22
D7M487_ARALY (tr|D7M487) Protein translocase subunit secA chloro...   100   7e-20
C5XIW8_SORBI (tr|C5XIW8) Protein translocase subunit secA OS=Sor...    73   1e-11
O24590_MAIZE (tr|O24590) Cp-SecA (Fragment) OS=Zea mays GN=tha1 ...    71   5e-11

>B9RN40_RICCO (tr|B9RN40) Protein translocase subunit secA OS=Ricinus communis
           GN=RCOM_1343310 PE=3 SV=1
          Length = 980

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 69/133 (51%), Positives = 84/133 (63%), Gaps = 6/133 (4%)

Query: 20  MAAPLCDXXXXXXXXXXXXFPPNSLVANEIYHGKTRLVTSFFGAKSPKMLGSAAKTWKLE 79
           MAA L +            FP  SL  ++ +  KT++ +SF+G K   +    AK   L 
Sbjct: 1   MAASLLESPLVNRYPSISSFPIKSLATSQNHMPKTQIGSSFYGTK---LFSCGAK---LG 54

Query: 80  XXXXXXMVAMASLGGLLGGIFKGTDTGESTRQQYAPTVRLINGLETEMSALSDSELRNKT 139
                    +ASLGGLLGGIFKGTDTGE+TRQQYA TV +IN LE+EMSALSDS+LR+KT
Sbjct: 55  SKRRQRRSIVASLGGLLGGIFKGTDTGEATRQQYAQTVNVINKLESEMSALSDSQLRDKT 114

Query: 140 SVLKERALNGESL 152
             LKERA NGESL
Sbjct: 115 CALKERAQNGESL 127


>B9I9A8_POPTR (tr|B9I9A8) Protein translocase subunit secA OS=Populus trichocarpa
           GN=POPTRDRAFT_1098839 PE=3 SV=1
          Length = 963

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 54/67 (80%), Positives = 60/67 (89%)

Query: 86  MVAMASLGGLLGGIFKGTDTGESTRQQYAPTVRLINGLETEMSALSDSELRNKTSVLKER 145
           M A+ASLGGLLGGIFKGTDTGESTR+QYAPTV LIN LE E+SALSDS+LR+KT+ LKER
Sbjct: 1   MCAVASLGGLLGGIFKGTDTGESTRKQYAPTVSLINQLEAEISALSDSQLRDKTAALKER 60

Query: 146 ALNGESL 152
           A  GESL
Sbjct: 61  AQLGESL 67


>D7U2U1_VITVI (tr|D7U2U1) Whole genome shotgun sequence of line PN40024,
           scaffold_5.assembly12x (Fragment) OS=Vitis vinifera
           GN=VIT_00028249001 PE=4 SV=1
          Length = 938

 Score =  107 bits (267), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 53/64 (82%), Positives = 57/64 (89%)

Query: 89  MASLGGLLGGIFKGTDTGESTRQQYAPTVRLINGLETEMSALSDSELRNKTSVLKERALN 148
           MASLGGLLGGIFKGTDTGESTRQQYA TV LIN LE EMSA+SDSELR++T +LKERA  
Sbjct: 1   MASLGGLLGGIFKGTDTGESTRQQYAGTVTLINNLEAEMSAVSDSELRDRTRLLKERAQR 60

Query: 149 GESL 152
           GESL
Sbjct: 61  GESL 64


>D7M487_ARALY (tr|D7M487) Protein translocase subunit secA chloroplast
           OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_490399
           PE=4 SV=1
          Length = 1022

 Score =  100 bits (249), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 59/140 (42%), Positives = 79/140 (56%), Gaps = 13/140 (9%)

Query: 20  MAAPLCDXXXXXXXXXXXXFPPNSLVANEIYHGKTRLV--TSFFGAKSPKML-----GSA 72
           M +PLCD                 ++A+ I+  + RL+  +SF+G K    +     G +
Sbjct: 1   MVSPLCDSQLLNHRPSISPTASQFVIADGIFLRRNRLLGSSSFWGTKFGNTVKLGISGCS 60

Query: 73  AKTWKLEXXXXXXMVAMASLGGLLGGIFKGTDTGESTRQQYAPTVRLINGLETEMSALSD 132
           + +W+            ASLGGLL G FKG+D GESTRQQYA  V  +N LETE+SALSD
Sbjct: 61  SCSWRRTTSVN------ASLGGLLSGFFKGSDNGESTRQQYASIVASVNRLETEISALSD 114

Query: 133 SELRNKTSVLKERALNGESL 152
           SELR +T  LK+RA  GES+
Sbjct: 115 SELRERTDALKQRAQKGESM 134


>C5XIW8_SORBI (tr|C5XIW8) Protein translocase subunit secA OS=Sorghum bicolor
           GN=Sb03g013090 PE=3 SV=1
          Length = 1008

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/66 (54%), Positives = 50/66 (75%), Gaps = 2/66 (3%)

Query: 89  MASLGGLLGGIFKG--TDTGESTRQQYAPTVRLINGLETEMSALSDSELRNKTSVLKERA 146
           +A +GGLLG +F G   D GE+TR++YA TV  IN +E E+SALSD++LR +T+ L++RA
Sbjct: 64  LARVGGLLGSVFGGGGRDDGEATRKKYADTVARINSMEPEVSALSDADLRARTAALQDRA 123

Query: 147 LNGESL 152
             GESL
Sbjct: 124 RTGESL 129


>O24590_MAIZE (tr|O24590) Cp-SecA (Fragment) OS=Zea mays GN=tha1 PE=4 SV=1
          Length = 133

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 35/66 (53%), Positives = 51/66 (77%), Gaps = 2/66 (3%)

Query: 89  MASLGGLLGGIFKG--TDTGESTRQQYAPTVRLINGLETEMSALSDSELRNKTSVLKERA 146
           ++ +GGLLG +F G   D GE+TR++YA TV  IN +E E+SALSD++LR +T+ L++RA
Sbjct: 63  VSRVGGLLGTVFGGGGRDDGEATRKKYADTVARINSMEPEVSALSDADLRARTAALQDRA 122

Query: 147 LNGESL 152
            +GESL
Sbjct: 123 RSGESL 128