Jatropha Genome Database
- JcCB0428571.10
BLASTP 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0428571.10 + phase: 0 /partial
(164 letters)
Database: trembl
11,636,205 sequences; 3,746,823,912 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
B9HJH7_POPTR (tr|B9HJH7) Rna-dependent RNA polymerase OS=Populus... 215 1e-54
B3SND7_GOSHI (tr|B3SND7) RNA-dependent RNA polymerase OS=Gossypi... 195 1e-48
B2B9K0_GOSHI (tr|B2B9K0) RNA-dependent RNA polymerase OS=Gossypi... 192 1e-47
Q8H1K9_ARATH (tr|Q8H1K9) RNA-dependent RNA polymerase 1 OS=Arabi... 189 8e-47
Q9LQV2_ARATH (tr|Q9LQV2) F10B6.19 OS=Arabidopsis thaliana GN=At1... 189 8e-47
D7MI29_ARALY (tr|D7MI29) RNA-dependent RNA polymerase 1 OS=Arabi... 183 4e-45
D7KCJ9_ARALY (tr|D7KCJ9) RNA-dependent RNA polymerase 1 OS=Arabi... 180 4e-44
B9HVU2_POPTR (tr|B9HVU2) Rna-dependent RNA polymerase (Fragment)... 174 3e-42
Q9ZRY7_TOBAC (tr|Q9ZRY7) RNA-directed RNA polymerase OS=Nicotian... 173 4e-42
A4UBI7_9SOLA (tr|A4UBI7) Putative RNA-directed RNA polymerase 1 ... 172 1e-41
C1I213_NICGU (tr|C1I213) RNA-dependent RNA polymerase OS=Nicotia... 165 2e-39
B5M060_HORVU (tr|B5M060) RNA-directed RNA polymerase 1b OS=Horde... 161 2e-38
Q6RFI0_HORVD (tr|Q6RFI0) RNA-directed RNA polymerase 1 OS=Hordeu... 159 7e-38
A4UV44_SOLTU (tr|A4UV44) Putative RNA-dependent RNA-polymerase (... 156 5e-37
Q6L449_SOLDE (tr|Q6L449) RNA-directed RNA polymerase-like, ident... 156 5e-37
Q0KIR1_SOLDE (tr|Q0KIR1) RNA-directed RNA polymerase, putative O... 156 8e-37
Q0KIP4_SOLDE (tr|Q0KIP4) RNA-directed RNA polymerase-like, putat... 155 1e-36
Q9ZR58_SOLLC (tr|Q9ZR58) RNA-directed RNA polymerase OS=Solanum ... 154 2e-36
A4UV17_SOLTU (tr|A4UV17) Putative RNA-dependent RNA-polymerase O... 154 2e-36
Q0KIK8_SOLTU (tr|Q0KIK8) RNA-directed RNA polymerase-like, putat... 154 2e-36
A4UV46_SOLTU (tr|A4UV46) Putative RNA-dependent RNA-polymerase O... 154 2e-36
B9HJH5_POPTR (tr|B9HJH5) Rna-dependent RNA polymerase OS=Populus... 154 4e-36
A4UV18_SOLTU (tr|A4UV18) Putative RNA-dependent RNA-polymerase O... 153 7e-36
B5M059_HORVU (tr|B5M059) RNA-directed RNA polymerase 1a (Fragmen... 149 7e-35
Q6RFH9_HORVD (tr|Q6RFH9) RNA-directed RNA polymerase 2 OS=Hordeu... 149 7e-35
C5XZ94_SORBI (tr|C5XZ94) Putative uncharacterized protein Sb04g0... 143 5e-33
D7T8K0_VITVI (tr|D7T8K0) Whole genome shotgun sequence of line P... 139 8e-32
A2X9D0_ORYSI (tr|A2X9D0) Putative uncharacterized protein OS=Ory... 138 2e-31
D7T8J9_VITVI (tr|D7T8J9) Whole genome shotgun sequence of line P... 138 2e-31
B0ZZ01_SOLLC (tr|B0ZZ01) RNA-dependent RNA polymerase (Fragment)... 134 2e-30
B9F2V8_ORYSJ (tr|B9F2V8) Putative uncharacterized protein OS=Ory... 134 5e-30
C7F747_MAIZE (tr|C7F747) Putative RNA-dependent RNA polymerase O... 133 7e-30
Q6L3P6_SOLDE (tr|Q6L3P6) RNA-directed RNA polymerase, putative O... 106 9e-22
Q6L3W8_SOLDE (tr|Q6L3W8) RNA-directed RNA polymerase, putative O... 104 2e-21
Q6L447_SOLDE (tr|Q6L447) RNA-directed RNA polymerase-like, putat... 104 4e-21
O82504_ARATH (tr|O82504) F2P3.11 protein OS=Arabidopsis thaliana... 61 4e-08
D7LYX0_ARALY (tr|D7LYX0) RNA-dependent RNA polymerase 2 OS=Arabi... 60 9e-08
>B9HJH7_POPTR (tr|B9HJH7) Rna-dependent RNA polymerase OS=Populus trichocarpa
GN=RDR902 PE=4 SV=1
Length = 1133
Score = 215 bits (547), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 103/165 (62%), Positives = 125/165 (75%), Gaps = 1/165 (0%)
Query: 1 MGKTIHVYGFPPDVTVDEVKKCLESHSGDGTVFAMKIRETKNGGQRKYAIVQFQTARDAE 60
M KT+ V GFP T V+ LESH+G GTV A+KIRE + GG RKYAIVQF T R AE
Sbjct: 1 MSKTVKVSGFPSSTTAGAVQVFLESHTGGGTVEALKIREIRTGGARKYAIVQFTTTRAAE 60
Query: 61 LIISL-NKRLRYGTSYLKARTLAKDIVPNPRTFLHSMDHITLHFGCRISKEKFSVLWTGT 119
IISL N RL YG SYL AR + +DI+P PR+FLH+M+ +TLHFG + SKEKFS +W+G
Sbjct: 61 QIISLANPRLWYGHSYLNARPMDRDIIPQPRSFLHTMESVTLHFGYQTSKEKFSAVWSGN 120
Query: 120 NVSVNFGFGLRKLQFFLSHEQMDYKLDLSYENVWQIELHCPRGRS 164
NVSVNFG G+RKL FFLSH +YKL+L +EN+WQIELH PRG++
Sbjct: 121 NVSVNFGLGMRKLHFFLSHNLAEYKLNLLFENIWQIELHRPRGQT 165
>B3SND7_GOSHI (tr|B3SND7) RNA-dependent RNA polymerase OS=Gossypium hirsutum PE=4
SV=1
Length = 1110
Score = 195 bits (496), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 95/165 (57%), Positives = 122/165 (73%), Gaps = 2/165 (1%)
Query: 1 MGKTIHVYGFPPDVTVDEVKKCLESHSGDGTVFAMKIRETKNGGQRKYAIVQFQTARDAE 60
MGKTI VYGF DV+ EVK LE ++G TV+A+KIR+ K G R +AIVQF + DA
Sbjct: 1 MGKTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHKKSG-RAFAIVQFTRSSDAG 59
Query: 61 LIISL-NKRLRYGTSYLKARTLAKDIVPNPRTFLHSMDHITLHFGCRISKEKFSVLWTGT 119
LII L N+RL YG SYLKAR + DIVP PR FLH+M+ +T++FGC++S+EKF VLW
Sbjct: 60 LIIRLANQRLYYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFGCQVSEEKFYVLWKAD 119
Query: 120 NVSVNFGFGLRKLQFFLSHEQMDYKLDLSYENVWQIELHCPRGRS 164
NV++NFG G+RKL+F LS+ YKL+L YEN+WQIEL CP ++
Sbjct: 120 NVTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQT 164
>B2B9K0_GOSHI (tr|B2B9K0) RNA-dependent RNA polymerase OS=Gossypium hirsutum PE=2
SV=1
Length = 1110
Score = 192 bits (487), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 94/165 (56%), Positives = 120/165 (72%), Gaps = 2/165 (1%)
Query: 1 MGKTIHVYGFPPDVTVDEVKKCLESHSGDGTVFAMKIRETKNGGQRKYAIVQFQTARDAE 60
MGKTI VYGF DV+ EVK LE ++G TV+A+KIR+ K G R +AIVQF + DA
Sbjct: 1 MGKTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHKKSG-RAFAIVQFTRSSDAG 59
Query: 61 LIISL-NKRLRYGTSYLKARTLAKDIVPNPRTFLHSMDHITLHFGCRISKEKFSVLWTGT 119
LII L N+RL YG SYLKAR + DIVP PR FLH+M+ +T++F C +S+EKF VLW
Sbjct: 60 LIIRLANQRLYYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFDCHVSEEKFYVLWKAD 119
Query: 120 NVSVNFGFGLRKLQFFLSHEQMDYKLDLSYENVWQIELHCPRGRS 164
NV++NFG G+RKL+F LS+ YKL+L YEN+WQIEL CP ++
Sbjct: 120 NVTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQT 164
>Q8H1K9_ARATH (tr|Q8H1K9) RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana
PE=2 SV=1
Length = 1107
Score = 189 bits (480), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 90/165 (54%), Positives = 119/165 (72%), Gaps = 1/165 (0%)
Query: 1 MGKTIHVYGFPPDVTVDEVKKCLESHSGDGTVFAMKIRETKNGGQRKYAIVQFQTARDAE 60
MGKTI V+GFP V+ +EVKK LE +G GTV+A+K+R+ K GG R YAIVQF + R
Sbjct: 1 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 60
Query: 61 LII-SLNKRLRYGTSYLKARTLAKDIVPNPRTFLHSMDHITLHFGCRISKEKFSVLWTGT 119
LII + +RL YG SYLKA + +DIVP PR LH++ + + FGC++S +KF LW+
Sbjct: 61 LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQ 120
Query: 120 NVSVNFGFGLRKLQFFLSHEQMDYKLDLSYENVWQIELHCPRGRS 164
+V V+FG G+RKL F S Q DY+L+LSYEN+WQI+LH P+GRS
Sbjct: 121 DVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRS 165
>Q9LQV2_ARATH (tr|Q9LQV2) F10B6.19 OS=Arabidopsis thaliana GN=At1g14790 PE=2 SV=1
Length = 1107
Score = 189 bits (480), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 90/165 (54%), Positives = 119/165 (72%), Gaps = 1/165 (0%)
Query: 1 MGKTIHVYGFPPDVTVDEVKKCLESHSGDGTVFAMKIRETKNGGQRKYAIVQFQTARDAE 60
MGKTI V+GFP V+ +EVKK LE +G GTV+A+K+R+ K GG R YAIVQF + R
Sbjct: 1 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 60
Query: 61 LII-SLNKRLRYGTSYLKARTLAKDIVPNPRTFLHSMDHITLHFGCRISKEKFSVLWTGT 119
LII + +RL YG SYLKA + +DIVP PR LH++ + + FGC++S +KF LW+
Sbjct: 61 LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQ 120
Query: 120 NVSVNFGFGLRKLQFFLSHEQMDYKLDLSYENVWQIELHCPRGRS 164
+V V+FG G+RKL F S Q DY+L+LSYEN+WQI+LH P+GRS
Sbjct: 121 DVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRS 165
>D7MI29_ARALY (tr|D7MI29) RNA-dependent RNA polymerase 1 OS=Arabidopsis lyrata
subsp. lyrata GN=RDR1 PE=4 SV=1
Length = 1097
Score = 183 bits (465), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 87/166 (52%), Positives = 117/166 (70%), Gaps = 2/166 (1%)
Query: 1 MGKTIHVYGFPPDVTVDEVKKCLESHSGDGTVFAMKIRETKNGGQRKYAIVQFQTARDAE 60
MGKTI V+GFP V+ +EVKK LE +G GTV+A+K+R+ K GG R +AIVQF R A
Sbjct: 1 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVFAIVQFTNERYAR 60
Query: 61 LII--SLNKRLRYGTSYLKARTLAKDIVPNPRTFLHSMDHITLHFGCRISKEKFSVLWTG 118
II + + L YG SYL A + +DIVP PR LH++ + ++FGC++S +KF LW+
Sbjct: 61 QIITGAAERSLYYGRSYLNAFEVEQDIVPKPRASLHNISGLKMYFGCQVSTQKFLTLWSA 120
Query: 119 TNVSVNFGFGLRKLQFFLSHEQMDYKLDLSYENVWQIELHCPRGRS 164
+V V+FG G+RKL F S Q DY+L+LSYEN+WQI+LH P+GRS
Sbjct: 121 QDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRS 166
>D7KCJ9_ARALY (tr|D7KCJ9) RNA-dependent RNA polymerase 1 OS=Arabidopsis lyrata
subsp. lyrata GN=RDR1 PE=4 SV=1
Length = 1107
Score = 180 bits (457), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 86/166 (51%), Positives = 116/166 (69%), Gaps = 2/166 (1%)
Query: 1 MGKTIHVYGFPPDVTVDEVKKCLESHSGDGTVFAMKIRETKNGGQRKYAIVQFQTARDAE 60
MGKTI V+GFP V+ +EVKK LE +G GTV+A+K+R+ K GG R +AIVQF A
Sbjct: 1 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVFAIVQFTNEIYAR 60
Query: 61 LII--SLNKRLRYGTSYLKARTLAKDIVPNPRTFLHSMDHITLHFGCRISKEKFSVLWTG 118
II + +RL YG SYL A + +DIVP PR LH++ + ++FGC++S + LW+
Sbjct: 61 QIITGAAERRLYYGRSYLNAFEVEQDIVPKPRASLHNISGLKMYFGCQVSTQTLLTLWSA 120
Query: 119 TNVSVNFGFGLRKLQFFLSHEQMDYKLDLSYENVWQIELHCPRGRS 164
+VSV+FG G+RKL F S Q DY+L+LSYEN+WQI+LH P+GRS
Sbjct: 121 QDVSVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRS 166
>B9HVU2_POPTR (tr|B9HVU2) Rna-dependent RNA polymerase (Fragment) OS=Populus
trichocarpa GN=RDR903 PE=4 SV=1
Length = 1102
Score = 174 bits (440), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 91/169 (53%), Positives = 120/169 (71%), Gaps = 5/169 (2%)
Query: 1 MGKTIHVYGFPPDVTVDEVKKCLESHSGDGTVFAMKIRETKNGGQRKYAIVQFQTARDAE 60
M KTI +YGFP D++K+ LE +SG+GTV A+ + + K+ G R AIV+F T+ A+
Sbjct: 1 MAKTISLYGFPTVEPPDDIKEFLEEYSGEGTVVAVHVAQPKSAGSRTNAIVEFTTSEAAQ 60
Query: 61 LII--SLNKR-LRYGTSYLKARTLAKDIVPNPRTFL--HSMDHITLHFGCRISKEKFSVL 115
I SL+ L YG SYLKAR + +D VP + F +SMD+ITLHFGC++SKEKFSVL
Sbjct: 61 NIKLKSLDDEGLWYGNSYLKARDVYRDTVPMRKAFQTQYSMDNITLHFGCQVSKEKFSVL 120
Query: 116 WTGTNVSVNFGFGLRKLQFFLSHEQMDYKLDLSYENVWQIELHCPRGRS 164
WT +VSV FG LRK FFL+H +YKL+LSYEN++QIELH PRG++
Sbjct: 121 WTQKDVSVKFGVELRKFHFFLTHLSKNYKLELSYENIFQIELHRPRGKT 169
>Q9ZRY7_TOBAC (tr|Q9ZRY7) RNA-directed RNA polymerase OS=Nicotiana tabacum
GN=RdRP PE=2 SV=1
Length = 1116
Score = 173 bits (439), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 88/165 (53%), Positives = 123/165 (74%), Gaps = 4/165 (2%)
Query: 1 MGKTIHVYGFPPDVTVDEVKKCLESHSGDGTVFAMKIRETKNGGQRKYAIVQFQTARDAE 60
MGKTI V+GFP ++ + VKK LE+H+G+GTV+A++++++K GG+R +A VQF + AE
Sbjct: 1 MGKTIQVFGFPYLLSAEAVKKFLENHTGNGTVYALEVKQSK-GGRRAFAKVQFANNKSAE 59
Query: 61 LIISL-NKRLRYGTSYLKARTLAKDIVPNPRTFLHSMDHITLHFGCRISKEKFSVLWTGT 119
II L +K L YG SYLKA + DIV PRT++ MD +TL+FGC+IS +KF+VL +
Sbjct: 60 FIIDLASKGLYYGPSYLKAWEMKTDIV-QPRTYVEHMDGVTLNFGCQISDKKFAVLGS-K 117
Query: 120 NVSVNFGFGLRKLQFFLSHEQMDYKLDLSYENVWQIELHCPRGRS 164
+VS+ FG GL+K+ FFLSH DYKL LSYEN+WQ+ LH P G++
Sbjct: 118 DVSIKFGIGLKKIYFFLSHASADYKLQLSYENIWQVVLHRPYGQN 162
>A4UBI7_9SOLA (tr|A4UBI7) Putative RNA-directed RNA polymerase 1 OS=Nicotiana
attenuata PE=4 SV=1
Length = 1044
Score = 172 bits (435), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 85/164 (51%), Positives = 123/164 (75%), Gaps = 4/164 (2%)
Query: 1 MGKTIHVYGFPPDVTVDEVKKCLESHSGDGTVFAMKIRETKNGGQRKYAIVQFQTARDAE 60
MGKTI V+GFP ++ + VK LE+H+G+GTV+A++++++K GG+R +A VQF + AE
Sbjct: 1 MGKTIQVFGFPYLLSAEAVKTFLENHTGNGTVYALEVKQSK-GGRRAFAKVQFANNKSAE 59
Query: 61 LIISL-NKRLRYGTSYLKARTLAKDIVPNPRTFLHSMDHITLHFGCRISKEKFSVLWTGT 119
LI+ L ++ L YG SYL+A + DIV PRT++ MD +TL+FGC+IS +KF+VL +
Sbjct: 60 LIMDLASEGLYYGPSYLQAWEMKTDIV-QPRTYVQHMDGVTLNFGCQISDKKFAVLGS-K 117
Query: 120 NVSVNFGFGLRKLQFFLSHEQMDYKLDLSYENVWQIELHCPRGR 163
+VS+ FG GL+K+ FFLS+ DYKL LSYEN+WQ+ LHCP G+
Sbjct: 118 DVSIKFGIGLKKIYFFLSYGSTDYKLQLSYENIWQVVLHCPYGQ 161
>C1I213_NICGU (tr|C1I213) RNA-dependent RNA polymerase OS=Nicotiana glutinosa
PE=2 SV=1
Length = 1117
Score = 165 bits (417), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 85/164 (51%), Positives = 120/164 (73%), Gaps = 4/164 (2%)
Query: 1 MGKTIHVYGFPPDVTVDEVKKCLESHSGDGTVFAMKIRETKNGGQRKYAIVQFQTARDAE 60
MGKTI V+GFP ++ + VK LE+H+G+GTV+A++++++K GG+R +A VQF + AE
Sbjct: 1 MGKTIQVFGFPYLLSAEAVKTFLENHTGNGTVYALEVKQSK-GGRRAFAKVQFANNKSAE 59
Query: 61 LIISL-NKRLRYGTSYLKARTLAKDIVPNPRTFLHSMDHITLHFGCRISKEKFSVLWTGT 119
+II L +K L YG SYLKA + IV PRT++ MD +TL+FGC+IS +KF+VL +
Sbjct: 60 IIIDLASKGLYYGPSYLKAWEMKTYIV-QPRTYVQHMDGVTLNFGCQISDKKFAVLGSKV 118
Query: 120 NVSVNFGFGLRKLQFFLSHEQMDYKLDLSYENVWQIELHCPRGR 163
VS+ FG GL+K+ FFLS+ DYKL LSYEN+WQ+ LH P G+
Sbjct: 119 -VSIKFGIGLKKIYFFLSYGSTDYKLQLSYENIWQVVLHRPYGQ 161
>B5M060_HORVU (tr|B5M060) RNA-directed RNA polymerase 1b OS=Hordeum vulgare
GN=RDR1b PE=4 SV=1
Length = 1115
Score = 161 bits (407), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 80/165 (48%), Positives = 107/165 (64%), Gaps = 4/165 (2%)
Query: 2 GKTIHVYGFPPDVTVDEVKKCLESHSGDGTVFAMKIRETKN--GGQRKYAIVQFQTARDA 59
GKT+ V GFP V D VK LE G G VFA+K+R KN R +AIVQFQ+ A
Sbjct: 3 GKTLQVSGFPSTVNADHVKDLLEQIVGTGNVFAVKLRPPKNISANSRSFAIVQFQSEAHA 62
Query: 60 ELIISLNKR--LRYGTSYLKARTLAKDIVPNPRTFLHSMDHITLHFGCRISKEKFSVLWT 117
L+++ +R LR G+ YLKAR +DIVP PRT + ++ LHFGC + + SVLW+
Sbjct: 63 SLVLNAAQRNALRSGSHYLKARYAERDIVPRPRTTIFNLQGAKLHFGCLLKERVLSVLWS 122
Query: 118 GTNVSVNFGFGLRKLQFFLSHEQMDYKLDLSYENVWQIELHCPRG 162
GTNVSV FGF ++++ F L + YKL+LSYE++W+I+LH P G
Sbjct: 123 GTNVSVEFGFAMKRIDFCLIYNSKKYKLELSYESIWEIQLHRPPG 167
>Q6RFI0_HORVD (tr|Q6RFI0) RNA-directed RNA polymerase 1 OS=Hordeum vulgare var.
distichum GN=RDRP1 PE=2 SV=1
Length = 1115
Score = 159 bits (403), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 79/165 (47%), Positives = 107/165 (64%), Gaps = 4/165 (2%)
Query: 2 GKTIHVYGFPPDVTVDEVKKCLESHSGDGTVFAMKIRETKN--GGQRKYAIVQFQTARDA 59
GKT+ V GFP V D VK LE G G VFA+K+R KN R +AIVQFQ+ A
Sbjct: 3 GKTLQVSGFPSTVNADHVKDLLEQIVGTGNVFAVKLRPPKNISANSRSFAIVQFQSEAHA 62
Query: 60 ELIISLNKR--LRYGTSYLKARTLAKDIVPNPRTFLHSMDHITLHFGCRISKEKFSVLWT 117
L+++ +R LR G+ YLKAR +DIVP PRT + ++ LHFGC + + SVLW+
Sbjct: 63 SLVLNAAQRNALRSGSHYLKARYAERDIVPRPRTTIFNLQGAKLHFGCLLKERVLSVLWS 122
Query: 118 GTNVSVNFGFGLRKLQFFLSHEQMDYKLDLSYENVWQIELHCPRG 162
GT+VSV FGF ++++ F L + YKL+LSYE++W+I+LH P G
Sbjct: 123 GTDVSVEFGFAMKRIDFCLIYNSKKYKLELSYESIWEIQLHRPPG 167
>A4UV44_SOLTU (tr|A4UV44) Putative RNA-dependent RNA-polymerase (Fragment)
OS=Solanum tuberosum PE=4 SV=1
Length = 841
Score = 156 bits (395), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 86/165 (52%), Positives = 116/165 (70%), Gaps = 4/165 (2%)
Query: 1 MGKTIHVYGFPPDVTVDEVKKCLESHSGDGTVFAMKIRETKNGGQRKYAIVQFQTARDAE 60
MGKTI VYGFP ++ + VK LE H+G GTV A++++++K GG R +A VQF A+
Sbjct: 1 MGKTIQVYGFPYLLSAEVVKSFLEKHTGYGTVCALEVKQSK-GGSRAFAKVQFVDNISAD 59
Query: 61 LIISL-NKRLRYGTSYLKARTLAKDIVPNPRTFLHSMDHITLHFGCRISKEKFSVLWTGT 119
II+L +KRL +G+SYLKA + DIV R ++ MD ITL+FGC+IS +KF+VL + T
Sbjct: 60 KIINLASKRLYFGSSYLKAWEMKTDIV-QLRAYVDHMDGITLNFGCQISDDKFAVLGS-T 117
Query: 120 NVSVNFGFGLRKLQFFLSHEQMDYKLDLSYENVWQIELHCPRGRS 164
VS+ FG GL+K FFLS DYKL LSYEN+WQ+ LH P G++
Sbjct: 118 EVSIKFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHRPYGQN 162
>Q6L449_SOLDE (tr|Q6L449) RNA-directed RNA polymerase-like, identical OS=Solanum
demissum GN=SDM1_25t00003 PE=4 SV=2
Length = 190
Score = 156 bits (395), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 84/165 (50%), Positives = 117/165 (70%), Gaps = 4/165 (2%)
Query: 1 MGKTIHVYGFPPDVTVDEVKKCLESHSGDGTVFAMKIRETKNGGQRKYAIVQFQTARDAE 60
MGKTI V+GFP ++ + VK LE H+G GT+ A++++++K GG R +A VQF A+
Sbjct: 1 MGKTIQVFGFPNLLSAEVVKLFLEKHTGYGTICALEVKQSK-GGSRAFAKVQFVDNISAD 59
Query: 61 LIISL-NKRLRYGTSYLKARTLAKDIVPNPRTFLHSMDHITLHFGCRISKEKFSVLWTGT 119
II+L +KRL +G+SYLKA + DIV R ++ MD ITL+FGC+IS++KF+VL + T
Sbjct: 60 KIINLASKRLYFGSSYLKAWEMKTDIV-QLRAYVDHMDGITLNFGCQISEDKFAVLGS-T 117
Query: 120 NVSVNFGFGLRKLQFFLSHEQMDYKLDLSYENVWQIELHCPRGRS 164
VS+ FG GL+K FFLS DYKL LSYEN+WQ+ LH P G++
Sbjct: 118 EVSIKFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHRPYGQN 162
>Q0KIR1_SOLDE (tr|Q0KIR1) RNA-directed RNA polymerase, putative OS=Solanum
demissum GN=SDM1_32t00004 PE=4 SV=1
Length = 241
Score = 156 bits (394), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 85/165 (51%), Positives = 114/165 (69%), Gaps = 5/165 (3%)
Query: 1 MGKTIHVYGFPPDVTVDEVKKCLESHSGDGTVFAMKIRETKNGGQRKYAIVQFQTARDAE 60
MGKTI VYGFP + + VK LE H+G GTV A+ ++++K GG R +A VQF A+
Sbjct: 66 MGKTIQVYGFPDLLPAEVVKSFLEKHTGYGTVCALDVKQSK-GGSRAFAKVQFVDNISAD 124
Query: 61 LIISL-NKRLRYGTSYLKARTLAKDIVPNPRTFLHSMDHITLHFGCRISKEKFSVLWTGT 119
II+L +KRL +G+SYLKA + DIV ++ MD ITL+FGC+IS +KF+VL + T
Sbjct: 125 KIINLASKRLYFGSSYLKAWEMKTDIVQ--VAYVDHMDGITLNFGCQISDDKFAVLGS-T 181
Query: 120 NVSVNFGFGLRKLQFFLSHEQMDYKLDLSYENVWQIELHCPRGRS 164
VS+ FG GL+K+ FFLS DYKL LSYEN+WQ+ LH P G++
Sbjct: 182 EVSIKFGIGLKKIYFFLSRGSADYKLQLSYENIWQVVLHRPYGQN 226
>Q0KIP4_SOLDE (tr|Q0KIP4) RNA-directed RNA polymerase-like, putative OS=Solanum
demissum GN=SDM1_42t00004 PE=4 SV=1
Length = 215
Score = 155 bits (392), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 85/165 (51%), Positives = 114/165 (69%), Gaps = 5/165 (3%)
Query: 1 MGKTIHVYGFPPDVTVDEVKKCLESHSGDGTVFAMKIRETKNGGQRKYAIVQFQTARDAE 60
MGKTI VYGFP + + VK LE H+G GTV A+ ++++K GG R +A VQF A+
Sbjct: 27 MGKTIQVYGFPDLLPAEVVKSFLEKHTGYGTVCALDVKQSK-GGSRAFAKVQFVDNISAD 85
Query: 61 LIISL-NKRLRYGTSYLKARTLAKDIVPNPRTFLHSMDHITLHFGCRISKEKFSVLWTGT 119
II+L +KRL +G+SYLKA + DIV ++ MD ITL+FGC+IS +KF+VL + T
Sbjct: 86 KIINLASKRLYFGSSYLKAWEMKTDIVQ--VAYVDHMDGITLNFGCQISDDKFAVLGS-T 142
Query: 120 NVSVNFGFGLRKLQFFLSHEQMDYKLDLSYENVWQIELHCPRGRS 164
VS+ FG GL+K+ FFLS DYKL LSYEN+WQ+ LH P G++
Sbjct: 143 EVSIKFGIGLKKIYFFLSRGSADYKLQLSYENIWQVVLHRPYGQN 187
>Q9ZR58_SOLLC (tr|Q9ZR58) RNA-directed RNA polymerase OS=Solanum lycopersicum
GN=RdRP PE=2 SV=1
Length = 1114
Score = 154 bits (390), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 84/165 (50%), Positives = 115/165 (69%), Gaps = 4/165 (2%)
Query: 1 MGKTIHVYGFPPDVTVDEVKKCLESHSGDGTVFAMKIRETKNGGQRKYAIVQFQTARDAE 60
MGKTI V+GFP ++ + VK LE ++G GTV A++++++K GG R +A VQF A+
Sbjct: 1 MGKTIQVFGFPYLLSAEVVKSFLEKYTGYGTVCALEVKQSK-GGSRAFAKVQFADNISAD 59
Query: 61 LIISL-NKRLRYGTSYLKARTLAKDIVPNPRTFLHSMDHITLHFGCRISKEKFSVLWTGT 119
II+L N RL +G+SYLKA + DIV R ++ MD ITL+FGC+IS +KF+VL + T
Sbjct: 60 KIITLANNRLYFGSSYLKAWEMKTDIV-QLRAYVDQMDGITLNFGCQISDDKFAVLGS-T 117
Query: 120 NVSVNFGFGLRKLQFFLSHEQMDYKLDLSYENVWQIELHCPRGRS 164
VS+ FG GL+K FFLS DYKL LSYEN+WQ+ LH P G++
Sbjct: 118 EVSIQFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHRPYGQN 162
>A4UV17_SOLTU (tr|A4UV17) Putative RNA-dependent RNA-polymerase OS=Solanum
tuberosum PE=4 SV=1
Length = 1115
Score = 154 bits (390), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 84/165 (50%), Positives = 117/165 (70%), Gaps = 4/165 (2%)
Query: 1 MGKTIHVYGFPPDVTVDEVKKCLESHSGDGTVFAMKIRETKNGGQRKYAIVQFQTARDAE 60
MGKTI V+GFP ++ + VK LE H+G GT+ A++++++K GG R +A VQF A+
Sbjct: 1 MGKTIQVFGFPNLLSAEVVKLFLEKHTGYGTICALEVKQSK-GGSRAFAKVQFVDNISAD 59
Query: 61 LIISL-NKRLRYGTSYLKARTLAKDIVPNPRTFLHSMDHITLHFGCRISKEKFSVLWTGT 119
II+L +KRL +G+SYLKA + DIV R ++ MD ITL+FGC+IS++KF+VL + T
Sbjct: 60 KIINLASKRLYFGSSYLKAWEMKTDIV-QLRAYVDHMDGITLNFGCQISEDKFAVLGS-T 117
Query: 120 NVSVNFGFGLRKLQFFLSHEQMDYKLDLSYENVWQIELHCPRGRS 164
VS+ FG GL+K FFLS DYKL LSYEN+WQ+ LH P G++
Sbjct: 118 EVSIKFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHRPYGQN 162
>Q0KIK8_SOLTU (tr|Q0KIK8) RNA-directed RNA polymerase-like, putative OS=Solanum
tuberosum GN=STB1_54t00004 PE=4 SV=1
Length = 274
Score = 154 bits (390), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 85/165 (51%), Positives = 114/165 (69%), Gaps = 5/165 (3%)
Query: 1 MGKTIHVYGFPPDVTVDEVKKCLESHSGDGTVFAMKIRETKNGGQRKYAIVQFQTARDAE 60
MGKTI VYGFP + + VK LE H+G GTV A+ ++++K GG R +A VQF A+
Sbjct: 86 MGKTIQVYGFPDLLPAEVVKSFLEKHTGYGTVCALDVKQSK-GGSRAFAKVQFVDNISAD 144
Query: 61 LIISL-NKRLRYGTSYLKARTLAKDIVPNPRTFLHSMDHITLHFGCRISKEKFSVLWTGT 119
II+L +KRL +G+SYLKA + DIV ++ MD ITL+FGC+IS +KF+VL + T
Sbjct: 145 KIINLASKRLYFGSSYLKAWEMKTDIVQ--VAYVDHMDGITLNFGCQISDDKFAVLGS-T 201
Query: 120 NVSVNFGFGLRKLQFFLSHEQMDYKLDLSYENVWQIELHCPRGRS 164
VS+ FG GL+K+ FFLS DYKL LSYEN+WQ+ LH P G++
Sbjct: 202 EVSIKFGIGLKKIYFFLSRGSADYKLQLSYENIWQVVLHRPYGQN 246
>A4UV46_SOLTU (tr|A4UV46) Putative RNA-dependent RNA-polymerase OS=Solanum
tuberosum PE=4 SV=1
Length = 1065
Score = 154 bits (390), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 85/165 (51%), Positives = 114/165 (69%), Gaps = 5/165 (3%)
Query: 1 MGKTIHVYGFPPDVTVDEVKKCLESHSGDGTVFAMKIRETKNGGQRKYAIVQFQTARDAE 60
MGKTI VYGFP + + VK LE H+G GTV A+ ++++K GG R +A VQF A+
Sbjct: 1 MGKTIQVYGFPDLLPAEVVKSFLEKHTGYGTVCALDVKQSK-GGSRAFAKVQFVDNISAD 59
Query: 61 LIISL-NKRLRYGTSYLKARTLAKDIVPNPRTFLHSMDHITLHFGCRISKEKFSVLWTGT 119
II+L +KRL +G+SYLKA + DIV ++ MD ITL+FGC+IS +KF+VL + T
Sbjct: 60 KIINLASKRLYFGSSYLKAWEMKTDIVQ--VAYVDHMDGITLNFGCQISDDKFAVLGS-T 116
Query: 120 NVSVNFGFGLRKLQFFLSHEQMDYKLDLSYENVWQIELHCPRGRS 164
VS+ FG GL+K+ FFLS DYKL LSYEN+WQ+ LH P G++
Sbjct: 117 EVSIKFGIGLKKIYFFLSRGSADYKLQLSYENIWQVVLHRPYGQN 161
>B9HJH5_POPTR (tr|B9HJH5) Rna-dependent RNA polymerase OS=Populus trichocarpa
GN=RDR901 PE=4 SV=1
Length = 1139
Score = 154 bits (388), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 80/163 (49%), Positives = 109/163 (66%), Gaps = 8/163 (4%)
Query: 2 GKTIHVYGFPPDVTVDEVKKCLESHSGDGTVFAMKIRETKNGGQRKYAIVQFQTARDAEL 61
GKTI +Y F T +++K+ LE +SGDGTV ++ + +T + G R A VQF T+ A+
Sbjct: 41 GKTISLYRFRTVETSEDIKEFLEEYSGDGTVVSVDVDQTISEGSRTKAKVQFTTSEAAQK 100
Query: 62 IISLNKRLRYGTSYLKARTLAKDIVPNPRTFLHSMDHITLHFGCRISKEKFSVLWTGTNV 121
+ +LR SYLK R + DIVP +++D+ITLHFGC++SKEKF LW NV
Sbjct: 101 V-----KLR---SYLKVRDMDYDIVPTRMAAEYTIDNITLHFGCQVSKEKFYALWNKENV 152
Query: 122 SVNFGFGLRKLQFFLSHEQMDYKLDLSYENVWQIELHCPRGRS 164
SV FGFG RK+ FL++ YKL+LSYEN+WQIELH PRG++
Sbjct: 153 SVKFGFGNRKIYLFLTYLSTKYKLELSYENIWQIELHRPRGQA 195
>A4UV18_SOLTU (tr|A4UV18) Putative RNA-dependent RNA-polymerase OS=Solanum
tuberosum PE=4 SV=1
Length = 935
Score = 153 bits (386), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 85/165 (51%), Positives = 114/165 (69%), Gaps = 4/165 (2%)
Query: 1 MGKTIHVYGFPPDVTVDEVKKCLESHSGDGTVFAMKIRETKNGGQRKYAIVQFQTARDAE 60
MGKTI VYGFP ++ + VK LE H+G GTV A++++++K GG R +A VQF A+
Sbjct: 1 MGKTIQVYGFPRLLSAEVVKSFLEKHTGYGTVCALEVKQSK-GGSRAFAKVQFVDNISAD 59
Query: 61 LIISL-NKRLRYGTSYLKARTLAKDIVPNPRTFLHSMDHITLHFGCRISKEKFSVLWTGT 119
II+L +KRL +G+SYLKA L DIV ++ MD ITL+FGC+IS +KF+VL + T
Sbjct: 60 KIINLASKRLYFGSSYLKAWELETDIV-QLWAYVDHMDGITLNFGCQISDDKFAVLGS-T 117
Query: 120 NVSVNFGFGLRKLQFFLSHEQMDYKLDLSYENVWQIELHCPRGRS 164
VS+ FG GL+ FFLS DYKL LSYEN+WQ+ LH P G++
Sbjct: 118 EVSIKFGIGLKNFFFFLSSGSADYKLQLSYENIWQVVLHRPYGQN 162
>B5M059_HORVU (tr|B5M059) RNA-directed RNA polymerase 1a (Fragment) OS=Hordeum
vulgare GN=RDR1a PE=4 SV=1
Length = 1114
Score = 149 bits (377), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 76/165 (46%), Positives = 106/165 (64%), Gaps = 4/165 (2%)
Query: 2 GKTIHVYGFPPDVTVDEVKKCLESHSGDGTVFAMKIRETKN--GGQRKYAIVQFQTARDA 59
GKT+ V GFP V V VK LE G G V A+K+R KN R +AIVQF+T A
Sbjct: 3 GKTLQVSGFPATVNVHHVKDLLEQIVGLGKVCAVKLRPPKNISANSRSFAIVQFETEAHA 62
Query: 60 ELIISLNK--RLRYGTSYLKARTLAKDIVPNPRTFLHSMDHITLHFGCRISKEKFSVLWT 117
L+++ + LR G++YLK R +DI+ PRT L +++ TLHFGC + + SVLW+
Sbjct: 63 SLVVNAARGNALRSGSNYLKVRPAERDIILKPRTALFNLEDATLHFGCLLRERVLSVLWS 122
Query: 118 GTNVSVNFGFGLRKLQFFLSHEQMDYKLDLSYENVWQIELHCPRG 162
GT VSV FGF ++K+ F L++ YKL+LSYE++W+I+L+ P G
Sbjct: 123 GTGVSVEFGFAMKKIDFCLTYNLKKYKLELSYESIWEIQLYHPPG 167
>Q6RFH9_HORVD (tr|Q6RFH9) RNA-directed RNA polymerase 2 OS=Hordeum vulgare var.
distichum GN=RDRP2 PE=2 SV=1
Length = 1115
Score = 149 bits (377), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 76/165 (46%), Positives = 106/165 (64%), Gaps = 4/165 (2%)
Query: 2 GKTIHVYGFPPDVTVDEVKKCLESHSGDGTVFAMKIRETKN--GGQRKYAIVQFQTARDA 59
GKT+ V GFP V V VK LE G G V A+K+R KN R +AIVQF+T A
Sbjct: 3 GKTLQVSGFPATVNVHHVKDLLEQIVGLGKVCAVKLRPPKNISANSRSFAIVQFETEAHA 62
Query: 60 ELIISLNK--RLRYGTSYLKARTLAKDIVPNPRTFLHSMDHITLHFGCRISKEKFSVLWT 117
L+++ + LR G++YLK R +DI+ PRT L +++ TLHFGC + + SVLW+
Sbjct: 63 SLVVNAARGNALRSGSNYLKVRPAERDIILKPRTALFNLEDATLHFGCLLRERVLSVLWS 122
Query: 118 GTNVSVNFGFGLRKLQFFLSHEQMDYKLDLSYENVWQIELHCPRG 162
GT VSV FGF ++K+ F L++ YKL+LSYE++W+I+L+ P G
Sbjct: 123 GTGVSVEFGFAMKKIDFCLTYNLKKYKLELSYESIWEIQLYHPPG 167
>C5XZ94_SORBI (tr|C5XZ94) Putative uncharacterized protein Sb04g028630 OS=Sorghum
bicolor GN=Sb04g028630 PE=4 SV=1
Length = 1114
Score = 143 bits (361), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 106/164 (64%), Gaps = 4/164 (2%)
Query: 1 MGKTIHVYGFPPDVTVDEVKKCLESHSGDGTVFAMKIRETKN--GGQRKYAIVQFQTARD 58
+G+TI V+GF + + VK+ LE SG GT++A+K+R +N R +AIVQFQ+
Sbjct: 2 VGRTIQVHGFALTDSAESVKEFLERISGAGTIYALKLRHPRNISANSRAFAIVQFQSQES 61
Query: 59 AELIISLNKR--LRYGTSYLKARTLAKDIVPNPRTFLHSMDHITLHFGCRISKEKFSVLW 116
A L+ + +R R G YLK R +DIVP PR + S++ LH GC + + S L+
Sbjct: 62 ASLVEDVVQRNAPRIGRFYLKTRPADRDIVPRPRIPMFSLEDTVLHLGCLVKENILSALF 121
Query: 117 TGTNVSVNFGFGLRKLQFFLSHEQMDYKLDLSYENVWQIELHCP 160
T +NVSV FGF ++K+ F+LS+ + YKL+LSYE++W+I+LH P
Sbjct: 122 TASNVSVQFGFDMKKIYFYLSYNFIKYKLELSYESIWEIQLHRP 165
>D7T8K0_VITVI (tr|D7T8K0) Whole genome shotgun sequence of line PN40024,
scaffold_11.assembly12x (Fragment) OS=Vitis vinifera
GN=VIT_00011645001 PE=4 SV=1
Length = 943
Score = 139 bits (351), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 74/164 (45%), Positives = 101/164 (61%), Gaps = 33/164 (20%)
Query: 1 MGKTIHVYGFPPDVTVDEVKKCLESHSGDGTVFAMKIRETKNGGQRKYAIVQFQTARDAE 60
MGKTI VYG P +V+ +E+K+ LE ++G+GT+ A++I++ K+G +A VQF + R AE
Sbjct: 1 MGKTIQVYGVPSNVSANEIKEFLEKYTGEGTIEALEIKQPKSGVSMTHAKVQFTSLRLAE 60
Query: 61 LIISLNKRLRYGTSYLKARTLAKDIVPNPRTFLHSMDHITLHFGCRISKEKFSVLWTGTN 120
LIISL K+L YG +YLKAR + DI+P PRTFLHSMD ITLHFG ++S E+F
Sbjct: 61 LIISLAKQLWYGGNYLKAREMDLDIIPKPRTFLHSMDRITLHFGYQMSNERFC------- 113
Query: 121 VSVNFGFGLRKLQFFLSHEQMDYKLDLSYENVWQIELHCPRGRS 164
LS EN+WQI+L PRG++
Sbjct: 114 --------------------------LSCENIWQIQLREPRGQN 131
>A2X9D0_ORYSI (tr|A2X9D0) Putative uncharacterized protein OS=Oryza sativa subsp.
indica GN=OsI_08849 PE=4 SV=1
Length = 1067
Score = 138 bits (347), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 76/167 (45%), Positives = 103/167 (61%), Gaps = 7/167 (4%)
Query: 1 MG-KTIHVYGFPPDVTVDEVKKCLESHSGDGTVFAMKIRETKN--GGQRKYAIVQFQTAR 57
MG KT+ V GF D + D VK LE G G V+A+K+R KN R YAIVQFQT
Sbjct: 1 MGVKTLQVSGFALDDSADYVKDLLERIVGCGNVYAVKLRHPKNVTATSRAYAIVQFQTEE 60
Query: 58 DAELIISLNKR--LRYGTSYLKARTLAKDIVPNPRTFLHSMDHITLHFGCRISKEKFSVL 115
A L+ + +R LR G YLK +DIVP PR + ++ +TLHFGC + + S L
Sbjct: 61 HASLVKNAAQRKILRRGHYYLKVHPSDRDIVPRPRVSMFKLEDVTLHFGCLLKETILSAL 120
Query: 116 WTGTNVSVNFGFGLRKLQFFLS--HEQMDYKLDLSYENVWQIELHCP 160
W+ T VSV FGF L+K+ F+L + ++YKL+LSYE++W+I+L P
Sbjct: 121 WSRTGVSVEFGFNLKKIYFYLQLPNSSIEYKLELSYESIWEIQLQRP 167
>D7T8J9_VITVI (tr|D7T8J9) Whole genome shotgun sequence of line PN40024,
scaffold_11.assembly12x (Fragment) OS=Vitis vinifera
GN=VIT_00011643001 PE=4 SV=1
Length = 919
Score = 138 bits (347), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 65/123 (52%), Positives = 89/123 (72%), Gaps = 1/123 (0%)
Query: 1 MGKTIHVYGFPPDVTVDEVKKCLESHSGDGTVFAMKIRETKNGGQRKYAIVQFQTARDAE 60
M KTI VYGFP V+ DE+K+ LE ++G+GT+ A++I++ ++G +A VQF + AE
Sbjct: 1 MSKTIQVYGFPSIVSADEIKEFLEKYTGEGTIEALEIKQPRSGASMTHAKVQFTSFELAE 60
Query: 61 LIISL-NKRLRYGTSYLKARTLAKDIVPNPRTFLHSMDHITLHFGCRISKEKFSVLWTGT 119
II+L K++ YG +YLKAR + DI+P PR FLHSMD ITLHFGC++S E+F VLW
Sbjct: 61 FIITLCKKKVWYGRNYLKAREMDLDIIPKPRAFLHSMDRITLHFGCQMSDERFCVLWKAI 120
Query: 120 NVS 122
NVS
Sbjct: 121 NVS 123
>B0ZZ01_SOLLC (tr|B0ZZ01) RNA-dependent RNA polymerase (Fragment) OS=Solanum
lycopersicum PE=2 SV=1
Length = 163
Score = 134 bits (338), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/152 (48%), Positives = 103/152 (67%), Gaps = 4/152 (2%)
Query: 14 VTVDEVKKCLESHSGDGTVFAMKIRETKNGGQRKYAIVQFQTARDAELIISL-NKRLRYG 72
++ + V LE ++G GT A++++++K GG R +A VQF A+ II+L N RL +G
Sbjct: 1 LSAEVVLSFLEKYTGYGTSCALEVKQSK-GGSRAFAKVQFADNISADKIITLANNRLYFG 59
Query: 73 TSYLKARTLAKDIVPNPRTFLHSMDHITLHFGCRISKEKFSVLWTGTNVSVNFGFGLRKL 132
+SYLKA + DIV R ++ MD ITL+FGC+IS +KF+VL + T VS+ FG GL+K
Sbjct: 60 SSYLKAWEMKTDIV-QLRAYVDQMDGITLNFGCQISDDKFAVLGS-TEVSIQFGIGLKKF 117
Query: 133 QFFLSHEQMDYKLDLSYENVWQIELHCPRGRS 164
FFLS DYKL LSYEN+WQ+ LH P G++
Sbjct: 118 FFFLSSGSADYKLQLSYENIWQVVLHRPYGQN 149
>B9F2V8_ORYSJ (tr|B9F2V8) Putative uncharacterized protein OS=Oryza sativa subsp.
japonica GN=OsJ_08301 PE=4 SV=1
Length = 1027
Score = 134 bits (336), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 74/167 (44%), Positives = 102/167 (61%), Gaps = 7/167 (4%)
Query: 1 MG-KTIHVYGFPPDVTVDEVKKCLESHSGDGTVFAMKIRETKN--GGQRKYAIVQFQTAR 57
MG KT+ V GF D + D VK LE G G V+A+K+R KN R YAIVQFQT
Sbjct: 1 MGVKTLQVSGFALDDSADYVKDLLERIVGCGNVYAVKLRHPKNVTATSRAYAIVQFQTEE 60
Query: 58 DAELIISLNKR--LRYGTSYLKARTLAKDIVPNPRTFLHSMDHITLHFGCRISKEKFSVL 115
A L+ + +R LR G YLK +DIVP PR + ++ +TLHFGC + + S L
Sbjct: 61 HASLVKNAAQRKILRRGHYYLKVHPSDRDIVPRPRVSMFKLEDVTLHFGCLLKETILSAL 120
Query: 116 WTGTNVSVNFGFGLRKLQFFLS--HEQMDYKLDLSYENVWQIELHCP 160
W+ VSV FGF L+K+ F+L + ++YKL+LS+E++W+I+L P
Sbjct: 121 WSRKGVSVEFGFNLKKIYFYLQLPNSSIEYKLELSHESIWEIQLQRP 167
>C7F747_MAIZE (tr|C7F747) Putative RNA-dependent RNA polymerase OS=Zea mays
GN=RdRP PE=2 SV=1
Length = 1108
Score = 133 bits (334), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 66/164 (40%), Positives = 102/164 (62%), Gaps = 4/164 (2%)
Query: 1 MGKTIHVYGFPPDVTVDEVKKCLESHSGDGTVFAMKIRETKN--GGQRKYAIVQFQTARD 58
+G+TI V GF + + VK LE +G GT+ A+K+R +N R +AI QFQ+
Sbjct: 2 VGRTIQVQGFALTDSAEPVKLFLERIAGAGTICALKLRHPRNISANSRAFAIAQFQSQES 61
Query: 59 AELIISLNKRL--RYGTSYLKARTLAKDIVPNPRTFLHSMDHITLHFGCRISKEKFSVLW 116
A L+ + +RL + G YL+ R +DIVP PR + S++ I LH GC + + S L+
Sbjct: 62 ASLVENATQRLVLKIGRFYLRTRPADRDIVPRPRIPMFSLEDIVLHLGCLVKENILSALF 121
Query: 117 TGTNVSVNFGFGLRKLQFFLSHEQMDYKLDLSYENVWQIELHCP 160
+NVSV FGF ++K+ F+LS+ +KL+LSYE++W+++LH P
Sbjct: 122 RASNVSVQFGFDMKKIYFYLSYNFTKFKLELSYESIWEMQLHRP 165
>Q6L3P6_SOLDE (tr|Q6L3P6) RNA-directed RNA polymerase, putative OS=Solanum
demissum GN=SDM1_42t00020 PE=4 SV=2
Length = 1180
Score = 106 bits (264), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 65/137 (47%), Positives = 94/137 (68%), Gaps = 5/137 (3%)
Query: 1 MGKTIHVYGFPPDVTVDEVKKCLESHSGDGTVFAMKIRETKNGGQRKYAIVQFQTARDAE 60
MGKTI VYGFP ++ + VK LE H+G GTV A++++++K GG R +A VQF A+
Sbjct: 1 MGKTIQVYGFPYLLSAEVVKSFLEKHTGYGTVCALEVKQSK-GGSRAFAKVQFVDNISAD 59
Query: 61 LIISL-NKRLRYGTSYLKARTLAKDIVPNPRTFLHSMDHITLHFGCRISKEKFSVLWTGT 119
II+L +KRL +G+SYLKA + DIV + R ++ MD ITL+FGC+IS +KF+VL + T
Sbjct: 60 KIINLASKRLYFGSSYLKAWEMKTDIV-HLRAYVDHMDGITLNFGCQISDDKFAVLGS-T 117
Query: 120 NVSVNFGFGLRKLQFFL 136
V ++ +G + QF L
Sbjct: 118 EVVLHRPYG-QNAQFLL 133
>Q6L3W8_SOLDE (tr|Q6L3W8) RNA-directed RNA polymerase, putative OS=Solanum
demissum GN=SDM1_32t00007 PE=4 SV=2
Length = 1139
Score = 104 bits (260), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/137 (46%), Positives = 92/137 (67%), Gaps = 5/137 (3%)
Query: 1 MGKTIHVYGFPPDVTVDEVKKCLESHSGDGTVFAMKIRETKNGGQRKYAIVQFQTARDAE 60
MGKTI VYGFP ++ + VK LE H+G GTV A++++++K G R +A VQF A+
Sbjct: 27 MGKTIQVYGFPDLLSAEVVKSFLEKHTGYGTVCALEVKQSKRGS-RAFAKVQFVDNISAD 85
Query: 61 LIISL-NKRLRYGTSYLKARTLAKDIVPNPRTFLHSMDHITLHFGCRISKEKFSVLWTGT 119
II+L +KRL +G+SYLKA + DIV R ++ MD ITL+FGC+IS +KF+VL + T
Sbjct: 86 KIINLASKRLYFGSSYLKAWEMKADIV-QLRAYVDHMDGITLNFGCQISDDKFAVLGS-T 143
Query: 120 NVSVNFGFGLRKLQFFL 136
V ++ +G + QF L
Sbjct: 144 EVVLHRPYG-QNAQFLL 159
>Q6L447_SOLDE (tr|Q6L447) RNA-directed RNA polymerase-like, putative OS=Solanum
demissum GN=SDM1_25t00006 PE=4 SV=2
Length = 1137
Score = 104 bits (259), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 65/137 (47%), Positives = 92/137 (67%), Gaps = 5/137 (3%)
Query: 1 MGKTIHVYGFPPDVTVDEVKKCLESHSGDGTVFAMKIRETKNGGQRKYAIVQFQTARDAE 60
MGKTI VYGFP ++ + VK LE H+G GTV A++++++K GG R +A VQF A+
Sbjct: 71 MGKTIQVYGFPRLLSAEVVKSFLEKHTGYGTVCALEVKQSK-GGSRAFAKVQFVDNISAD 129
Query: 61 LIISL-NKRLRYGTSYLKARTLAKDIVPNPRTFLHSMDHITLHFGCRISKEKFSVLWTGT 119
II+L +KRL +G+SYLKA L DIV ++ MD ITL+FGC+IS +KF+VL + T
Sbjct: 130 KIINLASKRLYFGSSYLKAWELETDIV-QLWAYVDHMDGITLNFGCQISDDKFAVLGS-T 187
Query: 120 NVSVNFGFGLRKLQFFL 136
V ++ +G + QF L
Sbjct: 188 EVVLHRPYG-QNAQFLL 203
>O82504_ARATH (tr|O82504) F2P3.11 protein OS=Arabidopsis thaliana GN=AT4g11130
PE=2 SV=1
Length = 1133
Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 4/163 (2%)
Query: 4 TIHVYGFPPDVTVDEVKKCLESHSGDGTVFAMKIRETK-NGGQRKYAIVQFQT--ARDAE 60
T+ + P + DE+ + LE H G+ TVFA++I T+ N R +A VQF T +
Sbjct: 11 TVKISNVPQTIVADELLRFLELHLGEDTVFALEIPTTRDNWKPRDFARVQFTTLEVKSRA 70
Query: 61 LIISLNKRLRYGTSYLKARTLAKDIVPNPRTFLHSMDHITLHFGCRISKEK-FSVLWTGT 119
++S +L + T L+ DI+P P +D I L G S EK F L
Sbjct: 71 QLLSSQSKLLFKTHNLRLSEAYDDIIPRPVDPRKRLDDIVLTVGFPESDEKRFCALEKWD 130
Query: 120 NVSVNFGFGLRKLQFFLSHEQMDYKLDLSYENVWQIELHCPRG 162
V R+++F++ YK+++ +E++ + C G
Sbjct: 131 GVRCWILTEKRRVEFWVWESGDCYKIEVRFEDIIETLSCCVNG 173
>D7LYX0_ARALY (tr|D7LYX0) RNA-dependent RNA polymerase 2 OS=Arabidopsis lyrata
subsp. lyrata GN=RDR2 PE=4 SV=1
Length = 1134
Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 4/163 (2%)
Query: 4 TIHVYGFPPDVTVDEVKKCLESHSGDGTVFAMKIRETK-NGGQRKYAIVQFQT--ARDAE 60
T+ + P + DE+ + LE + G+ TVFA++I T+ N R +A VQF T +
Sbjct: 11 TLKISNVPQTIVADELLRFLELNLGEDTVFALEILTTRDNWKPRDFARVQFTTLEVKSRA 70
Query: 61 LIISLNKRLRYGTSYLKARTLAKDIVPNPRTFLHSMDHITLHFGCRISKEK-FSVLWTGT 119
++S +L + T L+ DI+P P +D I L G S EK F L
Sbjct: 71 QLLSSQSKLLFKTHNLRLSEAYDDIIPRPVDPRRRLDDIVLTVGFPESDEKRFCALEKWD 130
Query: 120 NVSVNFGFGLRKLQFFLSHEQMDYKLDLSYENVWQIELHCPRG 162
V R+L+F++ YK+++ +E++ + C G
Sbjct: 131 GVRCWILEEKRRLEFWVWENGECYKIEVRFEDIVETLCCCVNG 173