Jatropha Genome Database

JcCB0424221.20
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0424221.20 - phase: 2 /partial
         (95 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9RMP7_RICCO (tr|B9RMP7) Two-component sensor histidine kinase b...   139   1e-31
B9HLB7_POPTR (tr|B9HLB7) Type-b response regulator OS=Populus tr...   122   1e-26
D7GN50_POPCA (tr|D7GN50) Putative B-type response regulator 14 O...   120   6e-26
D7GN48_POPCA (tr|D7GN48) Putative B-type response regulator 21 O...   115   1e-24
D7TAK2_VITVI (tr|D7TAK2) Whole genome shotgun sequence of line P...    89   1e-16

>B9RMP7_RICCO (tr|B9RMP7) Two-component sensor histidine kinase bacteria,
           putative OS=Ricinus communis GN=RCOM_1082510 PE=4 SV=1
          Length = 584

 Score =  139 bits (350), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 66/97 (68%), Positives = 80/97 (82%), Gaps = 5/97 (5%)

Query: 1   SSTMKSQSFNLSCVSDFESSQKSINWGMHPSTTLDDDFQVCWFQGDCYAMNLGLHNIELP 60
           +ST+K+Q FN +C+SD ES+QKS+NWGM P   LDDDFQVCWFQGD YAMN+G  NIELP
Sbjct: 484 TSTIKNQGFNPNCISDVESAQKSVNWGMSP---LDDDFQVCWFQGDYYAMNVGRQNIELP 540

Query: 61  EYCDPGLITEVPTHLHDAVRFDYEN--LYDPTEYALI 95
           E  DPGLI +VPTHL+DAVRFD ++  LYD TEY+L+
Sbjct: 541 ENYDPGLIADVPTHLYDAVRFDCDSTLLYDLTEYSLV 577


>B9HLB7_POPTR (tr|B9HLB7) Type-b response regulator OS=Populus trichocarpa
           GN=PtRR14 PE=4 SV=1
          Length = 642

 Score =  122 bits (306), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/95 (60%), Positives = 77/95 (81%), Gaps = 2/95 (2%)

Query: 1   SSTMKSQSFNLSCVSDFESSQKSINWGMHPSTTLDDDFQVCWFQGDCYAMNLGLHNIELP 60
           + ++++Q FN++ +++FESS+K+IN GM P TTL++D QVCW  GDCY MNLGL NIE+ 
Sbjct: 543 TPSLENQGFNMNSITEFESSRKNINLGMLPFTTLEEDLQVCWVPGDCY-MNLGLQNIEVL 601

Query: 61  EYCDPGLITEVPTHLHDAVRFDYENLYDPTEYALI 95
           EY DPGLIT+VP +L+D +RFDYE   DPTEY+LI
Sbjct: 602 EYFDPGLITDVPVNLNDGLRFDYE-FNDPTEYSLI 635


>D7GN50_POPCA (tr|D7GN50) Putative B-type response regulator 14 OS=Populus
           canadensis GN=rr14 PE=2 SV=1
          Length = 594

 Score =  120 bits (300), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 55/93 (59%), Positives = 76/93 (81%), Gaps = 2/93 (2%)

Query: 3   TMKSQSFNLSCVSDFESSQKSINWGMHPSTTLDDDFQVCWFQGDCYAMNLGLHNIELPEY 62
           ++++Q FN++ +++FESS+K+IN GM P TTL++D +VCW  GDCY MNLGL NIE+ EY
Sbjct: 497 SLENQGFNMNSITEFESSRKNINLGMLPFTTLEEDLRVCWVPGDCY-MNLGLQNIEVLEY 555

Query: 63  CDPGLITEVPTHLHDAVRFDYENLYDPTEYALI 95
            DPGL+T+VP +L+D +RFDYE   DPTEY+LI
Sbjct: 556 FDPGLLTDVPVNLNDGLRFDYE-FNDPTEYSLI 587


>D7GN48_POPCA (tr|D7GN48) Putative B-type response regulator 21 OS=Populus
           canadensis GN=rr21 PE=2 SV=1
          Length = 563

 Score =  115 bits (289), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 55/95 (57%), Positives = 74/95 (77%), Gaps = 2/95 (2%)

Query: 1   SSTMKSQSFNLSCVSDFESSQKSINWGMHPSTTLDDDFQVCWFQGDCYAMNLGLHNIELP 60
           +S+M++Q  N++C++D ESS+K+IN GM P   LD+D QV +  GD Y M+LGL NIE+P
Sbjct: 465 TSSMENQGLNMNCLTDVESSRKNINLGMPPFAPLDEDLQVRFVPGDYY-MSLGLQNIEVP 523

Query: 61  EYCDPGLITEVPTHLHDAVRFDYENLYDPTEYALI 95
           EY DP L+T+VP HL+D +RFDYE  YDPTEY+LI
Sbjct: 524 EYFDPSLLTDVPIHLNDGLRFDYE-FYDPTEYSLI 557


>D7TAK2_VITVI (tr|D7TAK2) Whole genome shotgun sequence of line PN40024,
           scaffold_10.assembly12x (Fragment) OS=Vitis vinifera
           GN=VIT_00010300001 PE=4 SV=1
          Length = 594

 Score = 89.4 bits (220), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 45/93 (48%), Positives = 59/93 (63%)

Query: 3   TMKSQSFNLSCVSDFESSQKSINWGMHPSTTLDDDFQVCWFQGDCYAMNLGLHNIELPEY 62
            M++Q  N S V+D ES Q+++  G   +    +D QV W QGDC  MNLGL NIE  +Y
Sbjct: 495 NMRNQGHNQSGVNDLESFQRNLISGSGSALESLEDLQVHWLQGDCNPMNLGLRNIEFSDY 554

Query: 63  CDPGLITEVPTHLHDAVRFDYENLYDPTEYALI 95
            D  LITEVP HL+D ++ DYE L D TEY ++
Sbjct: 555 HDQKLITEVPFHLYDPLKLDYEYLSDLTEYPIM 587