Jatropha Genome Database

JcCB0424221.10
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0424221.10 + phase: 0 /pseudo/partial
         (139 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9RMP6_RICCO (tr|B9RMP6) Putative uncharacterized protein OS=Ric...   128   2e-28
B9HTE2_POPTR (tr|B9HTE2) Predicted protein OS=Populus trichocarp...    82   1e-14
B9HLB6_POPTR (tr|B9HLB6) Predicted protein OS=Populus trichocarp...    68   3e-10
D7TAK3_VITVI (tr|D7TAK3) Whole genome shotgun sequence of line P...    57   5e-07

>B9RMP6_RICCO (tr|B9RMP6) Putative uncharacterized protein OS=Ricinus communis
           GN=RCOM_1082500 PE=4 SV=1
          Length = 481

 Score =  128 bits (322), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 71/137 (51%), Positives = 85/137 (62%), Gaps = 23/137 (16%)

Query: 26  MLDXLYGSRTKSSTASGSK-----------------------FFQXXXXXXXXXXXXXSH 62
           +L  L G RTKSS+++GSK                       FFQ             + 
Sbjct: 345 ILQALSGDRTKSSSSNGSKERSSIISSPFSFRSEERAAKRKEFFQKLEEKNSAKEVEKTR 404

Query: 63  LHVKSKIPLTRPRSPKLGRKPSSYMVQEASFQHPQRPSVNAESSKRVVPKGNQSTTHSIT 122
           + VKSK+PLTRPRSPKLGRKPSS +VQE SF  P++PS +A SSKR+V KGNQS T S+T
Sbjct: 405 VQVKSKVPLTRPRSPKLGRKPSSNVVQETSFPLPRQPSAHAASSKRIVSKGNQSITRSVT 464

Query: 123 LLTRKKAHENASPNIQH 139
           LL +KKAHENASPNIQH
Sbjct: 465 LLPKKKAHENASPNIQH 481


>B9HTE2_POPTR (tr|B9HTE2) Predicted protein OS=Populus trichocarpa
           GN=POPTRDRAFT_658207 PE=4 SV=1
          Length = 331

 Score = 82.4 bits (202), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/70 (64%), Positives = 53/70 (75%)

Query: 68  KIPLTRPRSPKLGRKPSSYMVQEASFQHPQRPSVNAESSKRVVPKGNQSTTHSITLLTRK 127
           KIPLTRP+SPKLGRK +   V+EAS Q  QRPSVNAE+SK  + K N S+T  + LL +K
Sbjct: 260 KIPLTRPQSPKLGRKSTPNAVREASLQLHQRPSVNAETSKPFIQKSNHSSTCPVNLLPKK 319

Query: 128 KAHENASPNI 137
           KA ENASPNI
Sbjct: 320 KALENASPNI 329


>B9HLB6_POPTR (tr|B9HLB6) Predicted protein OS=Populus trichocarpa
           GN=POPTRDRAFT_766584 PE=4 SV=1
          Length = 581

 Score = 67.8 bits (164), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/71 (54%), Positives = 44/71 (61%), Gaps = 16/71 (22%)

Query: 68  KIPLTRPRSPKLGRKPSSYMVQEASFQHPQRPSVNAESSKRVVPKGNQSTTHSITLLTRK 127
           KIPLTRPRSPKLGRK +S                N  SSK V+ + N S+T SITLL +K
Sbjct: 526 KIPLTRPRSPKLGRKSTS----------------NVASSKPVIQRSNHSSTRSITLLPKK 569

Query: 128 KAHENASPNIQ 138
             HENASPNIQ
Sbjct: 570 NTHENASPNIQ 580


>D7TAK3_VITVI (tr|D7TAK3) Whole genome shotgun sequence of line PN40024,
           scaffold_10.assembly12x (Fragment) OS=Vitis vinifera
           GN=VIT_00010301001 PE=4 SV=1
          Length = 621

 Score = 57.4 bits (137), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/75 (45%), Positives = 46/75 (61%), Gaps = 7/75 (9%)

Query: 64  HVKSKIPLTRPRSPKLGRKPSSYMVQEASFQHPQRPSVNAESSKRVVPKGNQSTTHSITL 123
           H+K K P TRPRSPKLGRKP+   VQ+ + + P+ PS   +SS +   + N+       L
Sbjct: 553 HIK-KTPPTRPRSPKLGRKPTPNAVQDTNSRPPRVPSSRTDSSNKPATEKNK------LL 605

Query: 124 LTRKKAHENASPNIQ 138
           L +  + ENASPNIQ
Sbjct: 606 LPKNNSQENASPNIQ 620