Jatropha Genome Database

JcCB0398461.20
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0398461.20 + phase: 0 /partial
         (76 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9T208_RICCO (tr|B9T208) Putative uncharacterized protein OS=Ric...    75   2e-12
B9T8E3_RICCO (tr|B9T8E3) Putative uncharacterized protein OS=Ric...    68   3e-10
B9IAP0_POPTR (tr|B9IAP0) F-box family protein OS=Populus trichoc...    66   1e-09
A5C5X2_VITVI (tr|A5C5X2) Putative uncharacterized protein OS=Vit...    64   5e-09
D7TEL1_VITVI (tr|D7TEL1) Whole genome shotgun sequence of line P...    64   6e-09
B9I5U0_POPTR (tr|B9I5U0) F-box family protein OS=Populus trichoc...    64   7e-09
B9GTQ9_POPTR (tr|B9GTQ9) F-box family protein OS=Populus trichoc...    63   1e-08
B9GEM4_POPTR (tr|B9GEM4) Predicted protein OS=Populus trichocarp...    58   4e-07

>B9T208_RICCO (tr|B9T208) Putative uncharacterized protein OS=Ricinus communis
          GN=RCOM_0549160 PE=4 SV=1
          Length = 410

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/56 (64%), Positives = 43/56 (76%)

Query: 18 KIHQEATTMDSLPREIALNILSRLPITSLIHVKSVCLSWRSLAQDPLLATMHFSRM 73
          KI +     +SLP E+AL+ILSRLPIT LI+VK VC  WRSL Q PLLA+MHFSR+
Sbjct: 15 KIQEHPPGTESLPCELALDILSRLPITHLINVKRVCRFWRSLVQHPLLASMHFSRI 70


>B9T8E3_RICCO (tr|B9T8E3) Putative uncharacterized protein OS=Ricinus communis
          GN=RCOM_0072660 PE=4 SV=1
          Length = 383

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 41/59 (69%)

Query: 17 KKIHQEATTMDSLPREIALNILSRLPITSLIHVKSVCLSWRSLAQDPLLATMHFSRMVK 75
          KK     +T+DSLPREI  +ILSR+   SL  +K VC SWR+LAQDPLL  +HFS  ++
Sbjct: 2  KKGKATNSTIDSLPREIMADILSRVTTPSLFIIKFVCQSWRNLAQDPLLVDLHFSHKIE 60


>B9IAP0_POPTR (tr|B9IAP0) F-box family protein OS=Populus trichocarpa
          GN=POPTRDRAFT_1099953 PE=4 SV=1
          Length = 422

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/50 (58%), Positives = 37/50 (74%)

Query: 22 EATTMDSLPREIALNILSRLPITSLIHVKSVCLSWRSLAQDPLLATMHFS 71
          + T M+ LPREIA +ILSRLPITSL+  K VC +WR+L QDP L  ++ S
Sbjct: 21 QTTGMELLPREIAHDILSRLPITSLVQFKCVCRAWRALVQDPQLVDLYLS 70


>A5C5X2_VITVI (tr|A5C5X2) Putative uncharacterized protein OS=Vitis vinifera
          GN=VITISV_041941 PE=4 SV=1
          Length = 409

 Score = 63.9 bits (154), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 27/50 (54%), Positives = 36/50 (72%)

Query: 26 MDSLPREIALNILSRLPITSLIHVKSVCLSWRSLAQDPLLATMHFSRMVK 75
          M+ LPR+I L+ILSRLP+TSL+  + VC  WR +AQD LLA+ H  R  +
Sbjct: 27 MERLPRDIILDILSRLPVTSLVQFRFVCRGWRLMAQDSLLASKHLCRTAQ 76


>D7TEL1_VITVI (tr|D7TEL1) Whole genome shotgun sequence of line PN40024,
           scaffold_59.assembly12x (Fragment) OS=Vitis vinifera
           GN=VIT_00030586001 PE=4 SV=1
          Length = 282

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 27/50 (54%), Positives = 36/50 (72%)

Query: 26  MDSLPREIALNILSRLPITSLIHVKSVCLSWRSLAQDPLLATMHFSRMVK 75
           M+ LPR+I L+ILSRLP+TSL+  + VC  WR +AQD LLA+ H  R  +
Sbjct: 69  MERLPRDIILDILSRLPVTSLVQFRFVCRGWRLMAQDSLLASKHLCRTAQ 118


>B9I5U0_POPTR (tr|B9I5U0) F-box family protein OS=Populus trichocarpa
          GN=POPTRDRAFT_571160 PE=4 SV=1
          Length = 310

 Score = 63.5 bits (153), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 33/51 (64%), Positives = 38/51 (74%), Gaps = 1/51 (1%)

Query: 26 MDSLPREIALNILSRLPITSLIHVKSVCLSWRSLAQD-PLLATMHFSRMVK 75
          M+SLPREIA +ILSRLP+TSL++VK VC SWR L QD  LL  M F R  K
Sbjct: 1  MESLPREIAGDILSRLPVTSLVNVKFVCRSWRKLLQDSSLLVFMLFLRTTK 51


>B9GTQ9_POPTR (tr|B9GTQ9) F-box family protein OS=Populus trichocarpa
          GN=POPTRDRAFT_1072766 PE=4 SV=1
          Length = 408

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/50 (54%), Positives = 37/50 (74%)

Query: 22 EATTMDSLPREIALNILSRLPITSLIHVKSVCLSWRSLAQDPLLATMHFS 71
          + T M+ LPREIA +ILSRLPITSL+  K VC +WR++A DP +  ++ S
Sbjct: 21 QTTGMELLPREIAQDILSRLPITSLVKFKCVCRAWRAMALDPEVVNLYLS 70


>B9GEM4_POPTR (tr|B9GEM4) Predicted protein OS=Populus trichocarpa
          GN=POPTRDRAFT_548688 PE=4 SV=1
          Length = 391

 Score = 57.8 bits (138), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/56 (42%), Positives = 37/56 (66%)

Query: 17 KKIHQEATTMDSLPREIALNILSRLPITSLIHVKSVCLSWRSLAQDPLLATMHFSR 72
          +K  +E ++  +LP EI ++ILSRLP+ ++   KSVC SWR L   P  A +HF++
Sbjct: 12 RKCLEEPSSTPTLPAEIFVDILSRLPVEAMTQCKSVCKSWRDLLSTPYFARLHFAK 67