Jatropha Genome Database
- JcCB0389891.10
BLASTP 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0389891.10 + phase: 1 /TE/partial
(239 letters)
Database: trembl
11,636,205 sequences; 3,746,823,912 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Q6L4B3_SOLDE (tr|Q6L4B3) Polyprotein, putative OS=Solanum demiss... 80 2e-13
D7F169_BOMMO (tr|D7F169) Endonuclease-reverse transcriptase OS=B... 73 3e-11
Q1AKH8_SOYBN (tr|Q1AKH8) Reverse transcriptase family member OS=... 70 2e-10
C4JB60_MAIZE (tr|C4JB60) Putative uncharacterized protein OS=Zea... 67 1e-09
Q6L4A6_SOLDE (tr|Q6L4A6) Putative reverse transcriptase, identic... 65 7e-09
Q6L3P1_SOLDE (tr|Q6L3P1) Putative methyltransferase family prote... 59 5e-07
C0L2V9_ARAHY (tr|C0L2V9) Putative reverse transcriptase OS=Arach... 59 6e-07
C6Y4D5_9NEOP (tr|C6Y4D5) Endonuclease-reverse transcriptase HmRT... 56 3e-06
Q2HTD6_MEDTR (tr|Q2HTD6) RNA-binding region RNP-1 (RNA recogniti... 56 3e-06
>Q6L4B3_SOLDE (tr|Q6L4B3) Polyprotein, putative OS=Solanum demissum
GN=SDM1_19t00015 PE=4 SV=2
Length = 868
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/144 (38%), Positives = 80/144 (55%), Gaps = 22/144 (15%)
Query: 108 MLGLECY-----HVHKMSVAEMKMLRWI---KFLDKIKNDHIQQKVQVAEVGDKIRKRHL 159
+ G EC+ HVHKM VAEM+MLRW+ DKI+N+ I++KV VA V DK+R+ L
Sbjct: 563 LYGAECWPVKNAHVHKMHVAEMRMLRWMCGHTRSDKIRNEVIREKVGVASVVDKLREARL 622
Query: 160 RWFGH-------YPMXMTMCSGSXVXYIDRDAKMERGRLKTTXSEVVLKDL-LLNINADL 211
RWFGH P + C V + RGR K EV+ +DL +L+I D+
Sbjct: 623 RWFGHVKRRSADAP--VRRCEVMVV----EGTRRGRGRPKKYWEEVIRQDLAMLHITEDM 676
Query: 212 VMNRSKWKQRIHITITSLGIRSSY 235
++R +W+ RI + L +R S+
Sbjct: 677 TLDRKEWRSRIKVEDVVLELRVSW 700
>D7F169_BOMMO (tr|D7F169) Endonuclease-reverse transcriptase OS=Bombyx mori PE=4
SV=1
Length = 996
Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 67/112 (59%), Gaps = 4/112 (3%)
Query: 115 HVHKMSVAEMKMLRW---IKFLDKIKNDHIQQKVQVAEVGDKIRKRHLRWFGHYPMXMTM 171
+VH + VAEMKMLRW + LDKI+N++++ + V ++ DK+++ LRW+GH
Sbjct: 874 NVHTIQVAEMKMLRWMCGVTRLDKIRNEYVRGSLGVRDIADKMQESRLRWYGHVKRKQPD 933
Query: 172 CSGSXVXYIDRDAKMERGRLKTTXSEVVLKD-LLLNINADLVMNRSKWKQRI 222
G+ +D + RGR KT +VVLKD N+ + V +R+KW+ ++
Sbjct: 934 YVGNLALLLDLPGRRPRGRPKTRWRDVVLKDKRECNVADEDVEDRAKWRSKV 985
>Q1AKH8_SOYBN (tr|Q1AKH8) Reverse transcriptase family member OS=Glycine max PE=4
SV=1
Length = 377
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 75/128 (58%), Gaps = 10/128 (7%)
Query: 108 MLGLECY-----HVHKMSVAEMKMLRWI---KFLDKIKNDHIQQKVQVAEVGDKIRKRHL 159
+ G EC+ H +K+ VAEM+MLRW+ DKI+N+ I+++V VA + +K+ + L
Sbjct: 247 LYGTECWAVKSQHENKVGVAEMRMLRWMCGKTRQDKIRNEAIRERVGVAPIVEKMVENRL 306
Query: 160 RWFGHYPMXMTMCSGSXVXYIDRDAKME-RGRLKTTXSEVVLKDLLLN-INADLVMNRSK 217
RWFGH V ++R + RGR K T EV+ KDL +N ++ +V++R+
Sbjct: 307 RWFGHVERRPVDSVLRRVDQMERRQTIRGRGRPKKTIREVIKKDLEINGLDRSMVLDRTL 366
Query: 218 WKQRIHIT 225
W++ IH+
Sbjct: 367 WRKLIHVA 374
>C4JB60_MAIZE (tr|C4JB60) Putative uncharacterized protein OS=Zea mays PE=2 SV=1
Length = 215
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 71/134 (52%), Gaps = 22/134 (16%)
Query: 108 MLGLECY-----HVHKMSVAEMKMLRWI---KFLDKIKNDHIQQKVQVAEVGDKIRKRHL 159
+ G EC+ HV ++ VAEM+MLRWI D+++ND I+++V VA + +K+ + L
Sbjct: 86 LYGAECWPTKRRHVQQLCVAEMRMLRWICGHTRRDRVRNDDIRERVGVAPIEEKLMQHRL 145
Query: 160 RWFGH-------YPMXMTMCSGSXVXYIDRDAKMERGRLKTTXSEVVLKDL-LLNINADL 211
RWFGH P+ + + + K RGR T +E V +DL I+ +L
Sbjct: 146 RWFGHIQRRSDEAPVHIGIIRRP------ENVKRGRGRPTLTWTEAVKRDLKEWKIDKEL 199
Query: 212 VMNRSKWKQRIHIT 225
++R WK IH+
Sbjct: 200 AVDRKGWKCAIHVP 213
>Q6L4A6_SOLDE (tr|Q6L4A6) Putative reverse transcriptase, identical OS=Solanum
demissum GN=SDM1_19t00011 PE=4 SV=1
Length = 213
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 45/65 (69%), Gaps = 8/65 (12%)
Query: 108 MLGLECY-----HVHKMSVAEMKMLRWI---KFLDKIKNDHIQQKVQVAEVGDKIRKRHL 159
+ G EC+ HVHKM VAEM+MLRW+ DKI+N+ I++KV VA V DK+R+ L
Sbjct: 95 LYGAECWPVKNAHVHKMHVAEMRMLRWMCGHTRSDKIRNEVIREKVGVASVVDKLREARL 154
Query: 160 RWFGH 164
RWFGH
Sbjct: 155 RWFGH 159
>Q6L3P1_SOLDE (tr|Q6L3P1) Putative methyltransferase family protein OS=Solanum
demissum GN=SDM1_42t00008 PE=4 SV=2
Length = 828
Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 62/113 (54%), Gaps = 13/113 (11%)
Query: 124 MKMLRWI---KFLDKIKNDHIQQKVQVAEVGDKIRKRHLRWFGH-----YPMXMTMCSGS 175
M MLRW+ DKI+N+ I++KV VA V DK+R+ LRWFGH + C
Sbjct: 1 MSMLRWMCGHTRSDKIRNEVIREKVGVASVVDKLREARLRWFGHVKRRSADAAVRRCEV- 59
Query: 176 XVXYIDRDAKMERGRLKTTXSEVVLKDL-LLNINADLVMNRSKWKQRIHITIT 227
+ + RGR K EV+ +DL +L+I D+ ++R +W+ RI + ++
Sbjct: 60 ---MVVEGTRRGRGRPKKYWEEVIRQDLAMLHITEDMTLDRKEWRSRIKLRVS 109
>C0L2V9_ARAHY (tr|C0L2V9) Putative reverse transcriptase OS=Arachis hypogaea PE=4
SV=1
Length = 515
Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 44/64 (68%), Gaps = 8/64 (12%)
Query: 109 LGLECY-----HVHKMSVAEMKMLRWIKF---LDKIKNDHIQQKVQVAEVGDKIRKRHLR 160
L L+C+ H HK+SV+EMKMLRW+ LDKI+N+ I+++V VA + K+ + HL
Sbjct: 104 LKLKCWTVKGEHEHKLSVSEMKMLRWMSGRMQLDKIRNEDIRERVGVASIVKKMVESHLW 163
Query: 161 WFGH 164
WFGH
Sbjct: 164 WFGH 167
>C6Y4D5_9NEOP (tr|C6Y4D5) Endonuclease-reverse transcriptase HmRTE-e01
OS=Heliconius melpomene GN=HM01045 PE=4 SV=1
Length = 990
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 9/122 (7%)
Query: 108 MLGLECY-----HVHKMSVAEMKMLRW---IKFLDKIKNDHIQQKVQVAEVGDKIRKRHL 159
+ G EC+ H ++ V EMKMLRW + D+I+N I+ + V +V DK+++R L
Sbjct: 857 LYGSECWPALSRHTQELHVTEMKMLRWMCGVTRSDRIRNTFIRGSLGVRDVADKLQERRL 916
Query: 160 RWFGHYPMXMTMCSGSXVXYIDRDAKMERGRLKTTXSEVVLKDLLLN-INADLVMNRSKW 218
RWFGH G I GR + +VV++D+ N + + +R+KW
Sbjct: 917 RWFGHVTRRPKNYVGRKCLAILVPGARPPGRPRKRWLDVVMQDMRANGLTTEDAKDRAKW 976
Query: 219 KQ 220
+
Sbjct: 977 SR 978
>Q2HTD6_MEDTR (tr|Q2HTD6) RNA-binding region RNP-1 (RNA recognition motif);
Calcium-binding EF-hand OS=Medicago truncatula
GN=MtrDRAFT_AC150443g37v2 PE=4 SV=2
Length = 559
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 44/65 (67%), Gaps = 8/65 (12%)
Query: 108 MLGLECY-----HVHKMSVAEMKMLRWIKFL---DKIKNDHIQQKVQVAEVGDKIRKRHL 159
+ G EC+ H +++SVAEM+MLRW+ D+I+ND I+++V VA + +K+ + L
Sbjct: 289 LYGTECWAVKSQHENQVSVAEMRMLRWMSGKTRHDRIRNDTIRERVGVAPIVEKLVENRL 348
Query: 160 RWFGH 164
RWFGH
Sbjct: 349 RWFGH 353