Jatropha Genome Database

JcCB0384311.20
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0384311.20 - phase: 0 /partial
         (66 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B6TSD8_MAIZE (tr|B6TSD8) Putative uncharacterized protein OS=Zea...    93   1e-17

>B6TSD8_MAIZE (tr|B6TSD8) Putative uncharacterized protein OS=Zea mays PE=4
          SV=1
          Length = 66

 Score = 92.8 bits (229), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 42/65 (64%), Positives = 49/65 (75%)

Query: 2  KSDSDDLPAFLVTTHSYELPNWNNPDTIALNFVTDIVFSKRRYGTINGKDFGDGRMLRND 61
          +S SD+ P FLVTTHSY LP+WN+P+ IALN VTD+VFSK RYG + G D GDGRM   D
Sbjct: 2  RSPSDERPDFLVTTHSYALPSWNSPEIIALNLVTDMVFSKSRYGMMKGNDLGDGRMFSRD 61

Query: 62 INTGT 66
          I  GT
Sbjct: 62 IRAGT 66