Jatropha Genome Database

JcCB0368291.10
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0368291.10 - phase: 0 /pseudo/partial/short
         (47 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9R8F8_RICCO (tr|B9R8F8) Tetracycline transporter, putative OS=R...    61   4e-08
A9PF78_POPTR (tr|A9PF78) Putative uncharacterized protein OS=Pop...    61   5e-08
A5ALX6_VITVI (tr|A5ALX6) Putative uncharacterized protein OS=Vit...    59   2e-07
B9H5C4_POPTR (tr|B9H5C4) Predicted protein (Fragment) OS=Populus...    58   4e-07

>B9R8F8_RICCO (tr|B9R8F8) Tetracycline transporter, putative OS=Ricinus
          communis GN=RCOM_1599560 PE=4 SV=1
          Length = 442

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/37 (72%), Positives = 32/37 (86%)

Query: 4  MERLSHLLLTFFLYNFSTFMVTPAMTDVTMSALCPGQ 40
          +  LSHL +T FL+NFSTFMV PA+TDVTMSALCPG+
Sbjct: 4  LSGLSHLFMTIFLHNFSTFMVIPAITDVTMSALCPGR 40


>A9PF78_POPTR (tr|A9PF78) Putative uncharacterized protein OS=Populus
          trichocarpa PE=2 SV=1
          Length = 450

 Score = 60.8 bits (146), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/37 (72%), Positives = 32/37 (86%)

Query: 4  MERLSHLLLTFFLYNFSTFMVTPAMTDVTMSALCPGQ 40
          +  LSHL +T FL+NFSTFMV PA+TDVTMSALCPG+
Sbjct: 4  LSGLSHLFMTIFLHNFSTFMVIPAITDVTMSALCPGR 40


>A5ALX6_VITVI (tr|A5ALX6) Putative uncharacterized protein OS=Vitis vinifera
          GN=VITISV_038996 PE=4 SV=1
          Length = 408

 Score = 58.5 bits (140), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/40 (67%), Positives = 34/40 (85%), Gaps = 3/40 (7%)

Query: 4  MERLS---HLLLTFFLYNFSTFMVTPAMTDVTMSALCPGQ 40
          ME+LS   HL +T FL+NF+TFMV PA+TDVTM+ALCPG+
Sbjct: 1  MEKLSGLRHLFMTVFLFNFATFMVIPAITDVTMAALCPGR 40


>B9H5C4_POPTR (tr|B9H5C4) Predicted protein (Fragment) OS=Populus trichocarpa
          GN=POPTRDRAFT_715555 PE=4 SV=1
          Length = 447

 Score = 57.8 bits (138), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/39 (66%), Positives = 31/39 (79%)

Query: 2  K*MERLSHLLLTFFLYNFSTFMVTPAMTDVTMSALCPGQ 40
          K +  LSHL +T FL+NFS  MV PA+TDVTMSALCPG+
Sbjct: 2  KTLSGLSHLFITIFLHNFSAVMVIPAITDVTMSALCPGR 40